HHsearch results for GI: 254780130 and protein with PDBid: 3fmp_B
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens}
Probab=99.10 E-value=6.8e-12 Score=84.15 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 23433499998614899711057899999998765----------30477823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
..|+..|.+++......++|||++-....+.+... +.++.....|..+++.|++|+.+||+++ .+++.|
T Consensus 318 ~~k~~~L~~ll~~~~~~~~iIF~~s~~~~~~~~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~iLVaT-d~~~rG 396 (479)
T 3fmp_B 318 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-NVCARG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC-CCHHCC
T ss_conf 8899999999984577727999721477899999997526751000454028999999999877998299979-602255
Q ss_pred HHHHHHCCEEEEECCCC------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf 22432067589726899------9888022555576665420265775399999838
Q gi|254780130|r 123 LNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~------n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~ 173 (205)
||+. ..++||+|++|. +++.|.|.+||.. |.|++-.| +.|++.
T Consensus 397 iDip-~V~~VI~yd~P~~~~~~~~~~~yihr~GR~G-----R~g~~G~a--i~~~~~ 445 (479)
T 3fmp_B 397 IDVE-QVSVVINFDLPVDKDGNPDNETYLHRIGRTG-----RFGKRGLA--VNMVDS 445 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCC-CCCEEEEECCCCCCCCCCCCCEEEECCCCCC-----CCCCCEEE--EEEECC
T ss_conf 8724-7889999799987555676110520460353-----69995189--999773