HHsearch results for GI: 254780130 and protein with PDBid: 3i32_A

>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27}
Probab=99.73  E-value=9.9e-18  Score=116.44  Aligned_cols=124  Identities=14%  Similarity=0.207  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ...|++.|.+++...++.++||||+++.+.+.|...|.          ++.+...|..+++.|++++.++++++ .+++.
T Consensus        12 ~~~k~~~l~~~l~~~~~~k~iVF~~t~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~~~~~vlv~t-~~~~~   90 (300)
T 3i32_A           12 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-DVAAR   90 (300)
T ss_dssp             SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-STTTC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECC-HHHHC
T ss_conf             77399999999985798869999898899999999998689978999699999999999999986334032111-16550


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             32243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~  186 (205)
                      |+|+.. ++++|+|++||||..|.|++||+     +|.||+..|.+  |++..  |...++.+.+
T Consensus        91 Gid~~~-v~~vi~~d~p~~~~~y~qr~GR~-----~R~g~~~~~i~--~~~~~--e~~~~~~i~~  145 (300)
T 3i32_A           91 GLDIPQ-VDLVVHYRMPDRAEAYQHRSGRT-----GRAGRGGRVVL--LYGPR--ERRDVEALER  145 (300)
T ss_dssp             STTCCC-CSEEEESSCCSSTTHHHHHHTCC-----C-----CEEEE--EECSS--THHHHHHHHH
T ss_pred             CCCCCC-CCCEEEECCCCCHHHHHHHHCCC-----CCCCCCCEEEE--EECHH--HHHHHHHHHH
T ss_conf             466788-86126735985320678874425-----63889987999--97768--9999999999