HHsearch results for GI: 254780130 and protein with PDBid: 3i32_A
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27}
Probab=99.73 E-value=9.9e-18 Score=116.44 Aligned_cols=124 Identities=14% Similarity=0.207 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|++.|.+++...++.++||||+++.+.+.|...|. ++.+...|..+++.|++++.++++++ .+++.
T Consensus 12 ~~~k~~~l~~~l~~~~~~k~iVF~~t~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~~~~~vlv~t-~~~~~ 90 (300)
T 3i32_A 12 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-DVAAR 90 (300)
T ss_dssp SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-STTTC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECC-HHHHC
T ss_conf 77399999999985798869999898899999999998689978999699999999999999986334032111-16550
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 32243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
|+|+.. ++++|+|++||||..|.|++||+ +|.||+..|.+ |++.. |...++.+.+
T Consensus 91 Gid~~~-v~~vi~~d~p~~~~~y~qr~GR~-----~R~g~~~~~i~--~~~~~--e~~~~~~i~~ 145 (300)
T 3i32_A 91 GLDIPQ-VDLVVHYRMPDRAEAYQHRSGRT-----GRAGRGGRVVL--LYGPR--ERRDVEALER 145 (300)
T ss_dssp STTCCC-CSEEEESSCCSSTTHHHHHHTCC-----C-----CEEEE--EECSS--THHHHHHHHH
T ss_pred CCCCCC-CCCEEEECCCCCHHHHHHHHCCC-----CCCCCCCEEEE--EECHH--HHHHHHHHHH
T ss_conf 466788-86126735985320678874425-----63889987999--97768--9999999999