HHsearch results for GI: 254780130 and protein with PDBid: 3l9o_A
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.2e-07 Score=60.67 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE--------ECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 477823489999997278986999721443233224320675897--------268999888022555576665420265
Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF--------FSLWWDLEEHQQMIERIGVTRQRQAGF 161 (205)
Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~--------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205)
++.....|..+.+.|++|.++|++++ .+++.|||+. +.++||. +..|.++..|.|..||- -|.|.
T Consensus 512 ~~l~~~~R~~v~~~F~~g~i~VLvaT-~vla~GiDiP-~~~vVi~~~~k~d~~~~~~~t~~~y~Q~~GRA-----GR~G~ 584 (1108)
T 3l9o_A 512 SGLLPILKEVIEILFQEGFLKVLFAT-ETFSIGLNMP-AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA-----GRRGL 584 (1108)
T ss_dssp SCSCHHHHHHHHHHHHHTCCCEEEEE-SCCCSCCCC---CEEEESCSEEESSSCEEECCHHHHHHHHHHS-----CCSSS
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEC-HHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-----CCCCC
T ss_conf 88999999999998737995499963-3876678878-71799954653577555669999999997157-----88999
Q ss_pred CCCEEEEEEEECCCHHHH
Q ss_conf 775399999838895899
Q gi|254780130|r 162 KRAVFVYYLIAQNTIDEL 179 (205)
Q Consensus 162 ~~~v~v~~l~~~~tiEe~ 179 (205)
...-.++.++.++.-...
T Consensus 585 D~~G~~iil~~~~~~~~~ 602 (1108)
T 3l9o_A 585 DDRGIVIMMIDEKMEPQV 602 (1108)
T ss_dssp CSSEEEEEEECCCCCHHH
T ss_pred CCCEEEEEEECCCCCHHH
T ss_conf 885389999579857889