Query gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 205 No_of_seqs 122 out of 3331 Neff 7.3 Searched_HMMs 23785 Date Sun May 22 16:48:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780130.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1z5z_A Helicase of the SNF2/RA 100.0 6.6E-39 2.8E-43 233.6 13.0 190 2-198 43-248 (271) 2 3mwy_W Chromo domain-containin 100.0 1.2E-39 5E-44 237.7 8.6 169 23-197 507-707 (800) 3 1z3i_X Similar to RAD54-like; 100.0 6.2E-39 2.6E-43 233.7 12.2 190 2-197 325-551 (644) 4 1z63_A Helicase of the SNF2/RA 100.0 1E-34 4.2E-39 210.5 7.3 188 3-197 273-476 (500) 5 3dmq_A RNA polymerase-associat 100.0 2.4E-31 1E-35 191.7 11.9 135 50-190 485-631 (968) 6 3hgt_A HDA1 complex subunit 3; 100.0 8.9E-30 3.7E-34 183.1 3.4 180 2-188 38-251 (328) 7 1wp9_A ATP-dependent RNA helic 99.8 2.9E-20 1.2E-24 130.5 9.8 131 52-192 341-493 (494) 8 2fwr_A DNA repair protein RAD2 99.8 9.5E-20 4E-24 127.6 6.9 125 52-183 333-463 (472) 9 2hjv_A ATP-dependent RNA helic 99.8 8.7E-19 3.6E-23 122.3 11.7 126 52-188 19-154 (163) 10 3eaq_A Heat resistant RNA depe 99.8 1.5E-18 6.3E-23 121.0 11.0 125 52-187 15-149 (212) 11 2p6n_A ATP-dependent RNA helic 99.8 2E-18 8.4E-23 120.3 11.4 128 52-190 39-176 (191) 12 1t5i_A C_terminal domain of A 99.7 5.3E-17 2.2E-21 112.4 12.7 127 52-188 15-151 (172) 13 3i32_A Heat resistant RNA depe 99.7 9.9E-18 4.1E-22 116.4 8.7 124 52-186 12-145 (300) 14 1fuk_A Eukaryotic initiation f 99.6 9.1E-16 3.8E-20 105.6 10.6 122 52-184 14-145 (165) 15 2jgn_A DBX, DDX3, ATP-dependen 99.6 7E-16 3E-20 106.2 5.6 114 52-174 29-153 (185) 16 3gfp_A DEAD box protein 5; mRN 99.6 6.7E-15 2.8E-19 100.8 9.1 112 53-173 22-149 (189) 17 2rb4_A ATP-dependent RNA helic 99.5 1.2E-13 5.2E-18 93.8 10.1 124 53-187 19-158 (175) 18 3eiq_A Eukaryotic initiation f 99.4 9.8E-13 4.1E-17 88.8 8.5 122 53-185 265-396 (414) 19 2j0s_A ATP-dependent RNA helic 99.4 4.6E-12 1.9E-16 85.1 10.7 122 53-185 261-392 (410) 20 3fht_A ATP-dependent RNA helic 99.3 1.4E-11 5.8E-16 82.5 10.6 124 53-186 251-390 (412) 21 3i5x_A ATP-dependent RNA helic 99.3 1.7E-11 7.3E-16 81.9 10.0 114 62-186 333-459 (563) 22 1oyw_A RECQ helicase, ATP-depe 99.3 1.6E-11 6.6E-16 82.1 9.3 109 54-169 222-340 (523) 23 1s2m_A Putative ATP-dependent 99.3 4.9E-11 2.1E-15 79.4 10.5 117 58-185 248-374 (400) 24 1hv8_A Putative ATP-dependent 99.2 1.4E-10 6.1E-15 76.8 11.6 110 66-186 236-355 (367) 25 2db3_A ATP-dependent RNA helic 99.2 3.4E-10 1.4E-14 74.7 12.7 100 66-174 298-407 (434) 26 2z0m_A 337AA long hypothetical 99.2 1E-10 4.2E-15 77.7 9.3 111 57-176 209-325 (337) 27 1xti_A Probable ATP-dependent 99.1 2.3E-10 9.7E-15 75.7 9.4 123 54-186 236-368 (391) 28 2v1x_A ATP-dependent DNA helic 99.1 1E-10 4.4E-15 77.6 7.6 99 64-169 263-371 (591) 29 3fmp_B ATP-dependent RNA helic 99.1 6.8E-12 2.9E-16 84.1 0.0 112 53-173 318-445 (479) 30 2oca_A DAR protein, ATP-depend 99.1 4.3E-10 1.8E-14 74.2 8.6 103 67-175 346-459 (510) 31 2i4i_A ATP-dependent RNA helic 99.1 6.5E-10 2.7E-14 73.2 8.5 113 64-187 272-394 (417) 32 1fuu_A Yeast initiation factor 99.1 1.4E-11 5.9E-16 82.4 0.0 121 54-185 245-375 (394) 33 2xgj_A ATP-dependent RNA helic 98.9 8.5E-09 3.6E-13 67.0 10.5 84 90-180 414-505 (1010) 34 3l9o_A ATP-dependent RNA helic 98.7 1.2E-07 5E-12 60.7 9.7 83 90-179 512-602 (1108) 35 2va8_A SSO2462, SKI2-type heli 98.6 4.3E-07 1.8E-11 57.6 10.2 77 90-173 320-407 (715) 36 2p6r_A Afuhel308 helicase; pro 98.5 3.1E-07 1.3E-11 58.3 8.1 81 90-177 304-391 (702) 37 2zj8_A DNA helicase, putative 97.9 3.2E-05 1.4E-09 47.2 7.2 82 90-178 302-391 (720) 38 1gm5_A RECG; helicase, replica 97.9 2.5E-06 1E-10 53.4 1.4 87 89-186 620-707 (780) 39 2jlq_A Serine protease subunit 97.8 3.2E-05 1.3E-09 47.3 6.1 93 68-168 188-307 (451) 40 3h1t_A Type I site-specific re 97.7 9.4E-05 4E-09 44.6 7.5 99 67-172 438-559 (590) 41 1yks_A Genome polyprotein [con 97.7 3E-05 1.3E-09 47.3 4.0 91 67-165 176-291 (440) 42 2eyq_A TRCF, transcription-rep 97.6 9.5E-05 4E-09 44.6 5.5 94 67-167 811-917 (1151) 43 2whx_A Serine protease/ntpase/ 97.5 0.00024 9.9E-09 42.4 6.2 94 68-169 355-475 (618) 44 2v6i_A RNA helicase; membrane, 97.4 0.0002 8.4E-09 42.8 5.5 99 67-173 170-292 (431) 45 2z83_A Helicase/nucleoside tri 97.4 3.7E-05 1.6E-09 46.9 1.4 100 59-168 183-309 (459) 46 2wv9_A Flavivirin protease NS2 97.1 0.00019 8.1E-09 42.9 2.2 81 68-151 410-516 (673) 47 3jux_A Protein translocase sub 96.5 0.015 6.1E-07 32.5 8.5 110 53-168 457-583 (822) 48 2fsf_A Preprotein translocase 96.4 0.015 6.3E-07 32.4 7.8 114 53-174 424-584 (853) 49 1nkt_A Preprotein translocase 96.2 0.025 1.1E-06 31.2 8.3 109 53-168 443-613 (922) 50 2w00_A HSDR, R.ECOR124I; ATP-b 95.9 0.021 8.9E-07 31.6 6.6 79 95-184 636-716 (1038) 51 1tf5_A Preprotein translocase 95.9 0.036 1.5E-06 30.3 7.7 114 53-174 415-546 (844) 52 3kqn_A Serine protease/ntpase/ 95.1 0.006 2.5E-07 34.7 1.4 99 66-174 171-291 (437) 53 2vl7_A XPD; helicase, unknown 94.8 0.095 4E-06 28.0 7.0 81 59-140 376-464 (540) 54 3fho_A ATP-dependent RNA helic 94.4 0.0061 2.6E-07 34.6 0.1 119 53-179 342-476 (508) 55 2vsf_A XPD, DNA repair helicas 93.9 0.27 1.1E-05 25.5 9.5 82 58-140 421-510 (602) 56 1c4o_A DNA nucleotide excision 90.0 0.84 3.5E-05 22.8 8.6 126 54-187 423-565 (664) 57 3crv_A XPD/RAD3 related DNA he 85.4 1.6 6.9E-05 21.2 5.6 81 59-140 385-474 (551) 58 2ipc_A Preprotein translocase 36.7 19 0.00081 15.2 6.8 37 53-89 426-464 (997) 59 2ift_A Putative methylase HI07 31.7 16 0.00069 15.6 1.6 22 131-152 127-148 (201) 60 2xau_A PRE-mRNA-splicing facto 29.9 11 0.00046 16.6 0.5 104 66-177 301-446 (773) 61 2fpo_A Methylase YHHF; structu 24.2 26 0.0011 14.5 1.6 22 131-152 124-145 (202) No 1 >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase/recombination complex; 2.00A {Sulfolobus solfataricus P2} SCOP: c.37.1.19 Probab=100.00 E-value=6.6e-39 Score=233.57 Aligned_cols=190 Identities=18% Similarity=0.225 Sum_probs=157.1 Q ss_pred HHHHHHHHHHHHHHCCCCEEH--HHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEHHHH Q ss_conf 358999999999735783209--99999999998860770003445654205723433499998614--89971105789 Q gi|254780130|r 2 KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF 77 (205) Q Consensus 2 k~Y~~l~~~~~~~~~~~~i~a--~~~~~~~~kL~Ql~~g~~~~d~~~~~~~~~~~Kl~~l~~ii~~~--~~~kviVf~~f 77 (205) +.|+++..+....++...... ...++.+++|+|+|+||...+... .....++|+.++.+++++. .+.|+||||+| T Consensus 43 ~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrqic~~p~~~~~~~-~~~~~s~Kl~~l~~il~~~~~~~~kvIVFs~~ 121 (271) T 1z5z_A 43 AMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQF 121 (271) T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC-CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESC T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCC-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 99999999999988631251015799999999999806962310566-53001558999999999866358859999804 Q ss_pred HHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHH Q ss_conf 99999987653-----------0477823489999997278-98699972144323322432067589726899988802 Q gi|254780130|r 78 NSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145 (205) Q Consensus 78 ~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~-~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~ 145 (205) ...++.+...+ .|+.+..+|+.+++.|+++ ...|+++++++||+|+|||. |+++||++++|||..+. T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~G~~s~~~R~~~i~~f~~~~~~~vl~~~~~~~~~GlnL~~-a~~vi~~d~~wn~~~~~ 200 (271) T 1z5z_A 122 VDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPAVED 200 (271) T ss_dssp HHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTT-CSEEEECSCCSCTTTC- T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHH-HHHHHHCCCCCCHHHHH T ss_conf 08999999999985498479996753088778888643303540235651000166765244-31222207899978999 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 25555766654202657753999998388958999999999999999999999 Q gi|254780130|r 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198 (205) Q Consensus 146 Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~ 198 (205) ||++|+ ||+||+++|.||+|+++||||++|++++..|..+++.+++.. T Consensus 201 Qa~~R~-----~R~GQ~~~v~v~~li~~~Tiee~i~~~l~~K~~l~~~~~~~~ 248 (271) T 1z5z_A 201 QATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 248 (271) T ss_dssp ------------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT T ss_pred HHCCCC-----CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 881888-----666898733999987489999999999999999999986288 No 2 >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Probab=100.00 E-value=1.2e-39 Score=237.71 Aligned_cols=169 Identities=18% Similarity=0.301 Sum_probs=140.4 Q ss_pred HHHHHHHHHHHHHCCCCHHCCCCCCC------------------CCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHH Q ss_conf 99999999998860770003445654------------------20572343349999861--48997110578999999 Q gi|254780130|r 23 FNSASKTVKCLQLANGAVYYDEEKHW------------------KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82 (205) Q Consensus 23 ~~~~~~~~kL~Ql~~g~~~~d~~~~~------------------~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~ 82 (205) .+....++.|++.|+|+..++..... ....++|+..|.+++.. ..|+||||||+|...++ T Consensus 507 ~~l~~~~~~lr~~~~hp~l~~~~e~~~~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~KvLIFsq~~~~ld 586 (800) T 3mwy_W 507 FSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLD 586 (800) T ss_dssp CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHH T ss_conf 89999999998851577652408787776315421236778887765449999999999986007982899971479899 Q ss_pred HHHHHH----------HCCCCHHHHHHHHHHHHCC--CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH Q ss_conf 987653----------0477823489999997278--9869997214432332243206758972689998880225555 Q gi|254780130|r 83 RLQKAF----------PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150 (205) Q Consensus 83 ~l~~~~----------~~~~~~~~r~~~i~~f~~~--~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~R 150 (205) .|...| .|+.+.+.|+.+++.|+++ ++.|||+++.|||+||||| +|++||+||++|||....||+|| T Consensus 587 ~L~~~L~~~g~~~~ridG~~~~~eR~~~i~~Fn~~~~~~~v~Llst~agg~GlNL~-~A~~VI~~D~~WNP~~~~Qa~gR 665 (800) T 3mwy_W 587 ILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLM-TADTVVIFDSDWNPQADLQAMAR 665 (800) T ss_dssp HHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCT-TCCEEEESSCCSCSHHHHHHHTT T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCHH-HCCEEEEECCCCCCCHHHHHHHH T ss_conf 99999862488636886789999999999997188999649991156526675644-48889997999892469999886 Q ss_pred HHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76665420265775399999838895899999999999999999999 Q gi|254780130|r 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205) Q Consensus 151 i~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205) + ||+||+++|.||+|+++||+|++|++++..|..+...+++. T Consensus 666 ~-----~RiGQ~k~V~Vyrlv~~~TvEe~i~~~~~~K~~l~~~vi~~ 707 (800) T 3mwy_W 666 A-----HRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISL 707 (800) T ss_dssp T-----SCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----- T ss_pred H-----HHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 6-----72599974899998879988999999999999999998647 No 3 >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination/DNA binding complex; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Probab=100.00 E-value=6.2e-39 Score=233.73 Aligned_cols=190 Identities=21% Similarity=0.332 Sum_probs=144.6 Q ss_pred HHHHHHHHHHHHHHC-CCCEEHHHHHHHHHHHHHHCCCCHHCCC---------------------CCCCCCCCHHHHHHH Q ss_conf 358999999999735-7832099999999999886077000344---------------------565420572343349 Q gi|254780130|r 2 KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDE---------------------EKHWKEVHDEKIKAL 59 (205) Q Consensus 2 k~Y~~l~~~~~~~~~-~~~i~a~~~~~~~~kL~Ql~~g~~~~d~---------------------~~~~~~~~~~Kl~~l 59 (205) +.|+.+.+....... .........+..+++|+|+|+++....+ ........+.|+..| T Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L 404 (644) T 1z3i_X 325 ELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 404 (644) T ss_dssp HHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH T ss_conf 99999999878887530101347789999999998449998875310111210003331310000122132331489999 Q ss_pred HHHHH---HCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCC--CEEEECHHHHHHHHH Q ss_conf 99986---148997110578999999987653----------047782348999999727898--699972144323322 Q gi|254780130|r 60 EVIIE---KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLN 124 (205) Q Consensus 60 ~~ii~---~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~--~Vll~~~~a~g~Gln 124 (205) ..++. ..+++|+||||+|..+++.|...+ .|+.+..+|+.+++.|++++. .|||++++|||+||| T Consensus 405 ~~l~~~~~~~~~~KviIFs~~~~tl~~l~~~L~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~v~LiSt~agg~GlN 484 (644) T 1z3i_X 405 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644) T ss_dssp HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC T ss_pred HHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCC T ss_conf 99998741267873899951156899999999975995899979999999999999963999997799820205450627 Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4320675897268999888022555576665420265775399999838895899999999999999999999 Q gi|254780130|r 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205) Q Consensus 125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205) || +||++|+||+||||....||+||+ ||+||+++|+||+|+++||||++|++++..|..+++.+++. T Consensus 485 L~-~A~~vI~~D~~WNp~~~~Qa~gRi-----~RiGQ~~~V~Vyrli~~gTiEe~i~~~~~~K~~l~~~v~~~ 551 (644) T 1z3i_X 485 LI-GANRLVMFDPDWNPANDEQAMARV-----WRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDE 551 (644) T ss_dssp CT-TEEEEEECSCCSSHHHHHHHHTTS-----SSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSC T ss_pred HH-HCCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 65-679999959999862899998513-----04899980799999859899999999999999999988589 No 4 >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Probab=100.00 E-value=1e-34 Score=210.47 Aligned_cols=188 Identities=18% Similarity=0.240 Sum_probs=140.0 Q ss_pred HHHHHHHHHHHHHCCCCE--EHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEHHHHH Q ss_conf 589999999997357832--099999999999886077000344565420572343349999861--4899711057899 Q gi|254780130|r 3 QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78 (205) Q Consensus 3 ~Y~~l~~~~~~~~~~~~i--~a~~~~~~~~kL~Ql~~g~~~~d~~~~~~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~ 78 (205) .|+.+.++....++.... .....+..+.+++++|+++...+.... ......+......++++ .+|.|+|||++|. T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~kviIfs~~~ 351 (500) T 1z63_A 273 MYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ-SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFV 351 (500) T ss_dssp HHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC-CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 99999999999887430432156899999998874037244311000-12245788999999998760598699999741 Q ss_pred HHHHHHHHHH-----------HCCCCHHHHHHHHHHHH-CCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHH Q ss_conf 9999987653-----------04778234899999972-78986999721443233224320675897268999888022 Q gi|254780130|r 79 SDLARLQKAF-----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146 (205) Q Consensus 79 ~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~-~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Q 146 (205) ..++.+...+ .++.+..+|+.+++.|+ +++..|+++++++||+|||||. |+++||||+||||..+.| T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~vll~s~~a~~~GlnL~~-a~~vI~~d~~wnp~~~~Q 430 (500) T 1z63_A 352 DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPAVEDQ 430 (500) T ss_dssp HHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT-CSEEEESSCCSCC---CH T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHH-CCEEEEECCCCCCCHHHH T ss_conf 5788888887750344430102664088899999972247786299960000466867445-899999899988335999 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 555576665420265775399999838895899999999999999999999 Q gi|254780130|r 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205) Q Consensus 147 a~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205) |+||+ ||+||+++|.||+|+++||||++|++++..|..+++.+++. T Consensus 431 ~igRi-----~R~GQ~~~v~v~~l~~~~tiee~i~~~l~~K~~~~~~~~~~ 476 (500) T 1z63_A 431 ATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 476 (500) T ss_dssp HHHTT-----TTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGS T ss_pred HHHHH-----HCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 98751-----63699971799998869988999999999999999998648 No 5 >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Probab=99.97 E-value=2.4e-31 Score=191.71 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=117.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCCC-CCEEEECHH Q ss_conf 057234334999986148997110578999999987653-----------04778234899999972789-869997214 Q gi|254780130|r 50 EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPA 117 (205) Q Consensus 50 ~~~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~~-~~Vll~~~~ 117 (205) ...++|+.++.+++.+..+.|++|||+|..+++.|...+ .++.+...|..+++.|++++ ..++++++. T Consensus 485 ~~~~~k~~~l~~~l~~~~~~KvlIF~~~~~t~~~L~~~l~~~~~~~~~~~~g~~s~~eR~~~i~~F~~~~~~~~iList~ 564 (968) T 3dmq_A 485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968) T ss_dssp TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 32579999999998750698717998314899999999987369717885588888999999999860668842997133 Q ss_pred HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 4323322432067589726899988802255557666542026577539999983889589999999999999 Q gi|254780130|r 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205) Q Consensus 118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205) +||+|+|||. |+++|+||+||||..++|++||+ ||+||+++|.||+++++||+|+++++.+..|.+. T Consensus 565 ag~eGlNLq~-a~~vI~~Dlpwnp~~~eQriGRi-----~RiGQ~~~v~i~~~~~~~t~e~~i~~~l~~k~~~ 631 (968) T 3dmq_A 565 IGSEGRNFQF-ASHMVMFDLPFNPDLLEQRIGRL-----DRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968) T ss_dssp CTTCSSCCTT-CCEEECSSCCSSHHHHHHHHHTT-----SCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC T ss_pred CCCCCCCHHH-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 0368878667-98899977998864899997305-----8779997079999850979999999999999999 No 6 >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Probab=99.95 E-value=8.9e-30 Score=183.07 Aligned_cols=180 Identities=8% Similarity=-0.031 Sum_probs=130.1 Q ss_pred HHHHHHHH----HHHHHHCCC----CEEHHHHHHHHHHHHHHCCCCHHCCCCCCC-----------CCCCHHHHHHHHHH Q ss_conf 35899999----999973578----320999999999998860770003445654-----------20572343349999 Q gi|254780130|r 2 KQYHKFQR----ELYCDLQGE----NIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVI 62 (205) Q Consensus 2 k~Y~~l~~----~~~~~~~~~----~i~a~~~~~~~~kL~Ql~~g~~~~d~~~~~-----------~~~~~~Kl~~l~~i 62 (205) +.|+.+.. +...+++.. .....+....+++|+|+|+||....++... ....|.|+..|.++ T Consensus 38 ~lY~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~l~~Lr~icnHP~Ll~~~~~~~~~~~~~~~~~l~~~S~K~~~l~~l 117 (328) T 3hgt_A 38 ELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDL 117 (328) T ss_dssp HHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHH T ss_conf 99999999769999988604776412578899999999998828905145763456644332146778658209999999 Q ss_pred HHHC--CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 8614--89971105789999999876530----------47782348999999727898699972144323322432067 Q gi|254780130|r 63 IEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130 (205) Q Consensus 63 i~~~--~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~ 130 (205) ++.. .|.+++|||||...++.|+..+. |......|......|+. ...+++++..+||.|+||+ +++ T Consensus 118 l~~~~~~~~kvlIfsq~~~~Ldlle~~l~~~~~~~~rldG~t~~~~r~~~~~~~~~-~~~~~l~s~~~~~~glnl~-~ad 195 (328) T 3hgt_A 118 INLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTV-HLFSSEGINFTKYPIKSKA-RFD 195 (328) T ss_dssp HHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------CCSEEE-EEEESSCCCTTTSCCCCCS-CCS T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCC-CCC T ss_conf 99987469759999786899999999999779708996499977888888760286-5027998986178777664-488 Q ss_pred EEEEECCCCCHHH---HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 5897268999888---022555576665420265775399999838895899999999999 Q gi|254780130|r 131 ILVFFSLWWDLEE---HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205) Q Consensus 131 ~vI~~~~~~n~~~---~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205) +||.||++|||.. ..||.+|. ||+||+++|.||+|++.||||+.++.....|. T Consensus 196 ~VI~~D~~wNP~~~~~~~qa~~r~-----~R~Gq~k~v~V~RLv~~~TiEh~~l~~~~~k~ 251 (328) T 3hgt_A 196 MLICLDTTVDTSQKDIQYLLQYKR-----ERKGLERYAPIVRLVAINSIDHCRLFFGKKFD 251 (328) T ss_dssp EEEECSTTCCTTSHHHHHHHCCC--------------CCEEEEEETTSHHHHHHHHHHHTC T ss_pred EEEEECCCCCCCCCHHHHHHHHHH-----HCCCCCCEEEEEEEECCCCHHHHHHHHCCCCC T ss_conf 899958988989746999999876-----33689845589999708999999998112443 No 7 >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19 Probab=99.82 E-value=2.9e-20 Score=130.49 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=104.9 Q ss_pred CHHHHHHHHHHH----HHCCCCCEEEHHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHCCCC Q ss_conf 723433499998----614899711057899999998765304------------------7782348999999727898 Q gi|254780130|r 52 HDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTLDKDPCTIQEWNEGKI 109 (205) Q Consensus 52 ~~~Kl~~l~~ii----~~~~~~kviVf~~f~~~l~~l~~~~~~------------------~~~~~~r~~~i~~f~~~~~ 109 (205) .++|++.+.+++ +..++.+++||+++....+.|...+.. +....+|..+++.|+++++ T Consensus 341 ~~~k~~~~~~~l~~~~~~~~~~~~~if~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~l~~F~~~~~ 420 (494) T 1wp9_A 341 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF 420 (494) T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 75089999999888875056654432113399999999999856985378623554446778899999999999977999 Q ss_pred CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 69997214432332243206758972689998880225555766654202657753999998388958999999999999 Q gi|254780130|r 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189 (205) Q Consensus 110 ~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~ 189 (205) +||+++ .+++.||||+. +++||+||+||||..+.|++||+ .|.| +..++.|+++||+|+.+++.+..|.. T Consensus 421 ~VLi~T-~~~~~Gidl~~-~~~VI~~d~p~~~~~~~Qr~GR~-----~R~~---~g~~~~l~~~~~~e~~~~~~~~~k~~ 490 (494) T 1wp9_A 421 NVLVAT-SVGEEGLDVPE-VDLVVFYEPVPSAIRSIQRRGRT-----GRHM---PGRVIILMAKGTRDEAYYWSSRQKEK 490 (494) T ss_dssp SEEEEC-GGGGGGGGSTT-CCEEEESSCCHHHHHHHHHHTTS-----CSCC---CSEEEEEEETTSHHHHHHHHCC---- T ss_pred CEEEEC-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCC---CCEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 899885-51050677135-99999959998989999998545-----8899---98899999799879999999999998 Q ss_pred HHH Q ss_conf 999 Q gi|254780130|r 190 IQD 192 (205) Q Consensus 190 ~~~ 192 (205) ++. T Consensus 491 ~~~ 493 (494) T 1wp9_A 491 IMQ 493 (494) T ss_dssp --- T ss_pred HCC T ss_conf 716 No 8 >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Probab=99.79 E-value=9.5e-20 Score=127.60 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=108.0 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH Q ss_conf 72343349999861489971105789999999876530-----4778234899999972789869997214432332243 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-----~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~ 126 (205) ...|+..+.++++...+.+++||+.+.+.++.+...|. +.....+|+.+++.|++++.+|++++ .++++|+|++ T Consensus 333 ~~~k~~~l~~ll~~~~~~~~lvf~~~~~~~~~i~~~~~~~~i~g~~~~~eR~~il~~F~~g~~~vLv~t-~~l~~GiDip 411 (472) T 2fwr_A 333 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSS-QVLDEGIDVP 411 (472) T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCS-SCCCSSSCSC T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCCC T ss_conf 488999999998741201466776579999976543044300378999999999999976999799880-2554152832 Q ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEEECCCHHHHHHHH Q ss_conf 206758972689998880225555766654202657-753999998388958999999 Q gi|254780130|r 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQR 183 (205) Q Consensus 127 ~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~-~~v~v~~l~~~~tiEe~i~~~ 183 (205) . ++++|+++++||+..+.|++||+ +|.||. +.+.+|.|++++|+|+...++ T Consensus 412 ~-~~~vI~~~~~~s~~~~~Q~~GR~-----~R~~~~k~~~~vy~~v~~~t~e~~~~~r 463 (472) T 2fwr_A 412 D-ANVGVIMSGSGSAREYIQRLGRI-----LRPSKGKKEAVLYELISRGTGEVNTARR 463 (472) T ss_dssp C-BSEEEEECCSSCCHHHHHHHHHS-----BCCCTTTCCEEEEEEEECSCC------- T ss_pred C-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCCEEEEEEEECCCCHHHHHHHH T ss_conf 3-99899968998989999998738-----8899999649999997799879999999 No 9 >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Probab=99.79 E-value=8.7e-19 Score=122.29 Aligned_cols=126 Identities=14% Similarity=0.241 Sum_probs=104.5 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) ++.|+++|.++++..++.++|||++++...+.|...+. ++.+...|..++..|+++++++++++ .+++. T Consensus 19 ~~~K~~~L~~ll~~~~~~k~iVF~~s~~~~~~l~~~l~~~g~~~~~~~g~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~ 97 (163) T 2hjv_A 19 EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DVAAR 97 (163) T ss_dssp GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGGTT T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEH-HHHHC T ss_conf 89999999999984798859999690999999999898669838999778329889865232347856899861-45447 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 3224320675897268999888022555576665420265775399999838895899999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205) |+|++. ++++|+|++|||+..|.|+.||. .|.|+...+ +.|++. .|+.+++.+.++. T Consensus 98 Gid~~~-v~~Vi~~d~p~~~~~y~qr~GR~-----gR~g~~g~~--i~~~~~--~d~~~l~~ie~~~ 154 (163) T 2hjv_A 98 GIDIEN-ISLVINYDLPLEKESYVHRTGRT-----GRAGNKGKA--ISFVTA--FEKRFLADIEEYI 154 (163) T ss_dssp TCCCSC-CSEEEESSCCSSHHHHHHHTTTS-----SCTTCCEEE--EEEECG--GGHHHHHHHHHHH T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECH--HHHHHHHHHHHHH T ss_conf 667665-50899758986899999986715-----707997579--997478--9999999999997 No 10 >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Probab=99.78 E-value=1.5e-18 Score=120.96 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=101.2 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 7234334999986148997110578999999987653----------047782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) ...|++.|.+++....+.++||||+++...+.|...| .++.+...|..+++.|++|++++++++ .+++. T Consensus 15 ~~~kl~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~vlv~T-~~~~~ 93 (212) T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-DVAAR 93 (212) T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-TTTTC T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-HHHHC T ss_conf 87699999999985798979999797899999999998689978998799999999999988634875478730-13432 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 322432067589726899988802255557666542026577539999983889589999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205) |+|++ .++++|+|++||||..+.|++||. +|.||...| +.++.. .|...++.+.+. T Consensus 94 Gid~~-~~~~Vi~~d~p~~~~~~~qr~GR~-----gR~g~~~~~--i~l~~~--~d~~~~~~i~~~ 149 (212) T 3eaq_A 94 GLDIP-QVDLVVHYRLPDRAEAYQHRSGRT-----GRAGRGGRV--VLLYGP--RERRDVEALERA 149 (212) T ss_dssp SSSCC-CBSEEEESSCCSSHHHHHHHHTTB-----CCCC--BEE--EEEECG--GGHHHHHHHHHH T ss_pred CCCCC-CCCHHHHCCCCCCHHHHHHHHCHH-----CCCCCCCEE--EEEECH--HHHHHHHHHHHH T ss_conf 43202-641554416999988999996650-----347789879--999784--589999999999 No 11 >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens} Probab=99.78 E-value=2e-18 Score=120.28 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=105.1 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) .+.|+..|.+++++. +.|+|||+++....+.|.+.|. ++.+...|..+++.|++++.+|++++ .+++. T Consensus 39 ~~~K~~~L~~~l~~~-~~kvlIF~~~~~~~~~l~~~L~~~g~~~~~ihg~~~~~eR~~~~~~f~~g~~~ilv~t-~~~~~ 116 (191) T 2p6n_A 39 EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASK 116 (191) T ss_dssp GGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHT T ss_pred CHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CEEEE T ss_conf 289999999998448-9999999899999999999998789979999798999999999987531244378861-00350 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 322432067589726899988802255557666542026577539999983889589999999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205) |+|++. ++++|+|++||||..|.|++||+ +|.||+..+ +.|++ ++.|+.++..+.++... T Consensus 117 Gid~~~-~~~VI~~d~p~~~~~yiQr~GR~-----gR~g~~g~~--i~~~~-~~~d~~~~~~l~~~l~~ 176 (191) T 2p6n_A 117 GLDFPA-IQHVINYDMPEEIENYVHRIGRT-----GCSGNTGIA--TTFIN-KACDESVLMDLKALLLE 176 (191) T ss_dssp TCCCCC-CSEEEESSCCSSHHHHHHHHTTS-----CC---CCEE--EEEEC-TTSCHHHHHHHHHHHHH T ss_pred CCCCCC-CEEEEEECCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEEC-CHHHHHHHHHHHHHHHH T ss_conf 257888-50899907999999998884666-----868996089--99989-80079999999999998 No 12 >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Probab=99.73 E-value=5.3e-17 Score=112.39 Aligned_cols=127 Identities=14% Similarity=0.202 Sum_probs=103.9 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) .+.|+++|.++++..++.++||||++....+.|.+.+. ++.+..+|...++.|++|+.++++++ .+++. T Consensus 15 ~~~K~~~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~l~~F~~g~~~iLi~T-d~~~~ 93 (172) T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGR 93 (172) T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCST T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-CHHHH T ss_conf 69999999999982899929999794899999999998779975788999999999999999970984488603-46551 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 3224320675897268999888022555576665420265775399999838895899999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205) |+|++ .++++|+|++||++..|.|+.||. .|.|++..+ +.|++. .-|..++..+.++. T Consensus 94 Gidi~-~~~~Vi~~d~p~~~~~yiqr~GR~-----gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~ 151 (172) T 1t5i_A 94 GMDIE-RVNIAFNYDMPEDSDTYLHRVARA-----GRFGTKGLA--ITFVSD-ENDAKILNDVQDRF 151 (172) T ss_dssp TCCGG-GCSEEEESSCCSSHHHHHHHHHHH-----TGGGCCCEE--EEEECS-HHHHHHHHHHHHHH T ss_pred CCCCC-CCCHHHHHCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECC-HHHHHHHHHHHHHH T ss_conf 67776-410245517999999998886556-----718995089--999894-57899999999997 No 13 >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27} Probab=99.73 E-value=9.9e-18 Score=116.44 Aligned_cols=124 Identities=14% Similarity=0.207 Sum_probs=100.4 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) ...|++.|.+++...++.++||||+++.+.+.|...|. ++.+...|..+++.|++++.++++++ .+++. T Consensus 12 ~~~k~~~l~~~l~~~~~~k~iVF~~t~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~~~~~vlv~t-~~~~~ 90 (300) T 3i32_A 12 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-DVAAR 90 (300) T ss_dssp SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-STTTC T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECC-HHHHC T ss_conf 77399999999985798869999898899999999998689978999699999999999999986334032111-16550 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH Q ss_conf 32243206758972689998880225555766654202657753999998388958999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205) |+|+.. ++++|+|++||||..|.|++||+ +|.||+..|.+ |++.. |...++.+.+ T Consensus 91 Gid~~~-v~~vi~~d~p~~~~~y~qr~GR~-----~R~g~~~~~i~--~~~~~--e~~~~~~i~~ 145 (300) T 3i32_A 91 GLDIPQ-VDLVVHYRMPDRAEAYQHRSGRT-----GRAGRGGRVVL--LYGPR--ERRDVEALER 145 (300) T ss_dssp STTCCC-CSEEEESSCCSSTTHHHHHHTCC-----C-----CEEEE--EECSS--THHHHHHHHH T ss_pred CCCCCC-CCCEEEECCCCCHHHHHHHHCCC-----CCCCCCCEEEE--EECHH--HHHHHHHHHH T ss_conf 466788-86126735985320678874425-----63889987999--97768--9999999999 No 14 >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Probab=99.65 E-value=9.1e-16 Score=105.58 Aligned_cols=122 Identities=13% Similarity=0.211 Sum_probs=98.8 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) .+.|++.|.++++..++.++||||+.+...+.+...+. +.....+|....++|++++.++++++ .+++. T Consensus 14 ~~~Kl~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLv~T-d~~~r 92 (165) T 1fuk_A 14 EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLAR 92 (165) T ss_dssp GGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-GGGTT T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-HHHHC T ss_conf 18899999999984799839999917677999999998579978999699999999999999853887557731-25436 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHH Q ss_conf 322432067589726899988802255557666542026577539999983889589999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l 184 (205) |+|++ .++++|+||+||||..|.|..||. .|.|+...+ +.+++.+ |...+..+ T Consensus 93 GiDi~-~v~~VI~~d~P~~~~~yiqR~GR~-----gR~g~~g~~--i~~~~~~--d~~~~~~i 145 (165) T 1fuk_A 93 GIDVQ-QVSLVINYDLPANKENYIHRIGRG-----GRFGRKGVA--INFVTNE--DVGAMREL 145 (165) T ss_dssp TCCCC-SCSEEEESSCCSSGGGGGGSSCSC-----C-----CEE--EEEEETT--THHHHHHH T ss_pred CCCCC-CCCEEEEECCCCCHHHHHHHHCCC-----CCCCCCEEE--EEEECHH--HHHHHHHH T ss_conf 66789-998899988997899998987035-----658995599--9985589--99999999 No 15 >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, acetylation, ATP-binding, DNA-binding; 1.91A {Homo sapiens} Probab=99.60 E-value=7e-16 Score=106.19 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=93.3 Q ss_pred CHHHHHHHHHHHHHC-CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHH Q ss_conf 723433499998614-89971105789999999876530----------4778234899999972789869997214432 Q gi|254780130|r 52 HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~-~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205) ...|+.+|.+++.+. ++.++|||++.....+.|...+. ++....+|..++..|++|+.+||++| .+++ T Consensus 29 ~~~K~~~L~~lL~~~~~~~k~iIF~~t~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~f~~g~~~vLVaT-d~~~ 107 (185) T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAA 107 (185) T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEE-C--- T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CHHH T ss_conf 078999999999833999948999797899999999998679988987089999999999999865997489850-0022 Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC Q ss_conf 332243206758972689998880225555766654202657753999998388 Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205) Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205) .|+|++. ++.||+||+||++..|.|..||. .|.|++.. .+.|+.+. T Consensus 108 rGiDi~~-v~~VI~yd~P~~~~~yihR~GR~-----gR~g~~g~--~i~~~~~~ 153 (185) T 2jgn_A 108 RGLDISN-VKHVINFDLPSDIEEYVHRIGRT-----GRVGNLGL--ATSFFNER 153 (185) T ss_dssp ---CCCS-BSEEEESSCCSSHHHHHHHHTTB-----CCTTSCEE--EEEEECGG T ss_pred HCCCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCCCCEE--EEEEECHH T ss_conf 0024688-86589924994688885662655-----65799748--99986478 No 16 >3gfp_A DEAD box protein 5; mRNA export, ATPase, RECA-fold, ATP-binding, cytoplasm, helicase, hydrolase, membrane, mRNA transport; 1.80A {Saccharomyces cerevisiae} PDB: 2kbf_A Probab=99.58 E-value=6.7e-15 Score=100.76 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=93.1 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|+++|.++++..+..++||||++....+.|.+.|. +..+..+|...++.|++++.++++++ .+++.| T Consensus 22 ~~K~~~L~~ll~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~ih~~~~~~~R~~~~~~f~~~~~~ilv~T-~~~~~G 100 (189) T 3gfp_A 22 ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-NVLARG 100 (189) T ss_dssp THHHHHHHHHHHHCCCSCEEEEESCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEE-TTTTTS T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-ECCCCC T ss_conf 9999999999973899979999797899999999998689989999799999999999988514885156664-012254 Q ss_pred HHHHHHCCEEEEECCCC------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC Q ss_conf 22432067589726899------9888022555576665420265775399999838 Q gi|254780130|r 123 LNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~------n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~ 173 (205) +|++. ++++|+|++|| ||..|.|+.||. .|.|++..| +.|++. T Consensus 101 id~~~-~~~vi~~d~p~~~~~~~~~~~yiqRiGR~-----gR~g~~g~~--i~~~~~ 149 (189) T 3gfp_A 101 IDIPT-VSMVVNYDLPTLANGQADPATYIHRIGRT-----GRFGRKGVA--ISFVHD 149 (189) T ss_dssp TTCCC-CSEEEESSCCBCTTSCBCHHHHHHHHTTS-----SCTTCCCEE--EEEECS T ss_pred CCCCC-EEEEEEECCCCCCCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECC T ss_conf 45245-51899947986333436999999872630-----558996479--999760 No 17 >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural genomics consortium, SGC, alternative initiation ATP-binding; 2.80A {Homo sapiens} Probab=99.50 E-value=1.2e-13 Score=93.77 Aligned_cols=124 Identities=20% Similarity=0.292 Sum_probs=97.8 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|++.|.++++...+.++|||++.....+.+...+. ++.....|..+++.|++++.++++++ .+++.| T Consensus 19 ~~K~~~L~~ll~~~~~~k~lIF~~s~~~~~~l~~~l~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLv~T-d~~~rG 97 (175) T 2rb4_A 19 KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-NVCARG 97 (175) T ss_dssp HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-CSCCTT T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EECCCC T ss_conf 8999999999985899989999792888999999998779988997099999999999999766994299844-310010 Q ss_pred HHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 224320675897268999------88802255557666542026577539999983889589999999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205) +|+. .++++|+||+||+ +..|.|++||. -|.|++. .++.|++.+ |...+..+.++ T Consensus 98 iDi~-~v~~VInyd~P~~~~~~~~~~~yihRiGR~-----gR~g~~G--~~i~~~~~~--e~~~l~~ie~~ 158 (175) T 2rb4_A 98 IDVK-QVTIVVNFDLPVKQGEEPDYETYLHRIGRT-----GRFGKKG--LAFNMIEVD--ELPSLMKIQDH 158 (175) T ss_dssp TCCT-TEEEEEESSCCC--CCSCCHHHHHHHHCBC---------CCE--EEEEEECGG--GHHHHHHHHHH T ss_pred CCCC-CCCEEEEECCCCCCCCCCCHHHEEEECCCC-----CCCCCCE--EEEEEECHH--HHHHHHHHHHH T ss_conf 2357-875899977898755556755511121323-----6389943--899997489--99999999999 No 18 >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens} Probab=99.39 E-value=9.8e-13 Score=88.79 Aligned_cols=122 Identities=15% Similarity=0.233 Sum_probs=97.7 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 23433499998614899711057899999998765304----------77823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|++.|.++++...+.+++||++-....+.+.+.|.. +....+|..+.+.|.+++.+|++++ .+++.| T Consensus 265 ~~k~~~l~~l~~~~~~~k~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~iLv~T-~~~~~G 343 (414) T 3eiq_A 265 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT-DLLARG 343 (414) T ss_dssp TTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEEC-SSCC-- T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCC T ss_conf 8899999999984589968999554999999999998679987998189967779999999874897699986-850236 Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH Q ss_conf 224320675897268999888022555576665420265775399999838895899999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205) +|+. ..++||+|++|.|+..|.|+.||.. |.|++-.| +.|++.+ |...++.+. T Consensus 344 lDip-~v~~VI~~~~p~s~~~yiqr~GR~g-----R~g~~G~~--~~~~~~~--d~~~l~~ie 396 (414) T 3eiq_A 344 IDVQ-QVSLVINYDLPTNRENYIHRIGRGG-----RFGRKGVA--INMVTEE--DKRTLRDIE 396 (414) T ss_dssp CCGG-GCSCEEESSCCSSTHHHHHHSCCC------------CE--EEEECST--HHHHHHHHH T ss_pred CCCC-CCCEEEEECCCCCHHHHHHHHCCCC-----CCCCCEEE--EEEECHH--HHHHHHHHH T ss_conf 7777-8878999699999999999855345-----89995699--9997589--999999999 No 19 >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Probab=99.37 E-value=4.6e-12 Score=85.06 Aligned_cols=122 Identities=13% Similarity=0.200 Sum_probs=96.2 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|...+..+++..++.++||||+-....+.+.+.|. +.....+|..+.+.|++|+.+|++++ .+.+.| T Consensus 261 ~~k~~~~~~l~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lh~~~~~~~r~~~~~~f~~g~~~vlvaT-~~l~~G 339 (410) T 2j0s_A 261 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-DVWARG 339 (410) T ss_dssp THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-GGGSSS T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC-CCHHCC T ss_conf 7899999999984478847999666899999999998789988999678987899999999873579799982-602146 Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH Q ss_conf 224320675897268999888022555576665420265775399999838895899999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205) +|+. ..++||+|++|.|+..|.|..||. -|.|++.. ++.|++.+ |...++.+. T Consensus 340 iDip-~v~~VI~~~~p~s~~~yiqr~GR~-----gR~g~~G~--~i~~~~~~--e~~~~~~i~ 392 (410) T 2j0s_A 340 LDVP-QVSLIINYDLPNNRELYIHRIGRS-----GRYGRKGV--AINFVKND--DIRILRDIE 392 (410) T ss_dssp CCCT-TEEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEE--EEEEEEGG--GHHHHHHHH T ss_pred CCCC-CCCEEEEECCCCCHHHHHHHHCCC-----CCCCCCEE--EEEEECHH--HHHHHHHHH T ss_conf 7866-888899969999999999885516-----67999669--99997579--999999999 No 20 >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Probab=99.32 E-value=1.4e-11 Score=82.45 Aligned_cols=124 Identities=20% Similarity=0.333 Sum_probs=94.7 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|++.|.++++.....++||||+-....+.+...|. ++.....|..+.+.|.+|+.+|++++ .+.+.| T Consensus 251 ~~k~~~l~~l~~~~~~~~~iIF~~s~~~~~~~~~~L~~~g~~~~~~h~~~~~~~R~~~l~~f~~g~~~iLvaT-~~~~~G 329 (412) T 3fht_A 251 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-NVCARG 329 (412) T ss_dssp HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGGTSS T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC-CCEECC T ss_conf 8899999999984677737999973126899999998559972012256468999999999867986188603-420135 Q ss_pred HHHHHHCCEEEEECCCC------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH Q ss_conf 22432067589726899------98880225555766654202657753999998388958999999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~------n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205) +|+. ..++||+|++|. ++..|.|..||.. |.|+.- .++.|++.. -|..+.+.+.+ T Consensus 330 iDip-~v~~VI~~d~P~~~~~~~s~~~yiqr~GR~g-----R~g~~G--~~i~lv~~~-~~~~~~~~i~~ 390 (412) T 3fht_A 330 IDVE-QVSVVINFDLPVDKDGNPDNETYLHRIGRTG-----RFGKRG--LAVNMVDSK-HSMNILNRIQE 390 (412) T ss_dssp CCCT-TEEEEEESSCCBCSSSSBCHHHHHHHHTTSS-----CTTCCE--EEEEEECSH-HHHHHHHHHHH T ss_pred CCCC-CCCEEEEECCCCCCCCCCCHHHEEECCCCCC-----CCCCCE--EEEEEECCH-HHHHHHHHHHH T ss_conf 6777-8888999789987455667111422032256-----799955--999998364-27999999999 No 21 >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* Probab=99.29 E-value=1.7e-11 Score=81.88 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=86.1 Q ss_pred HHHHCCCCCEEEHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH Q ss_conf 9861489971105789999999876530-------------477823489999997278986999721443233224320 Q gi|254780130|r 62 IIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128 (205) Q Consensus 62 ii~~~~~~kviVf~~f~~~l~~l~~~~~-------------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a 128 (205) +.+...+.++|||++.....+.+...|. ++.....|..+.+.|.+|+.+|++++ .+++.|||+. . T Consensus 333 i~~~~~~~k~iIF~~t~~~a~~l~~~L~~~~~~~~~v~~lhg~~~~~~R~~i~~~F~~g~~~ILVaT-dv~~~GiDip-~ 410 (563) T 3i5x_A 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-DVGARGMDFP-N 410 (563) T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-GGGTSSCCCT-T T ss_pred HHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCHHCCCCCC-C T ss_conf 8851367618996253999999999998630269626732589999999999999877997399984-6233266666-8 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH Q ss_conf 6758972689998880225555766654202657753999998388958999999999 Q gi|254780130|r 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205) Q Consensus 129 ~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205) .++||+|++|+++..|.|.+||. -|.|++-.+ +.|++.+ |...++.+.+ T Consensus 411 v~~VI~~~~P~s~~~yiqriGR~-----gR~G~~G~~--i~~~~~~--e~~~~~~l~~ 459 (563) T 3i5x_A 411 VHEVLQIGVPSELANYIHRIGRT-----ARSGKEGSS--VLFICKD--ELPFVRELED 459 (563) T ss_dssp CCEEEEESCCSSTTHHHHHHTTS-----SCTTCCEEE--EEEEEGG--GHHHHHHHHH T ss_pred CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCEEE--EEEECHH--HHHHHHHHHH T ss_conf 98899969998999999652232-----379994579--9997578--9999999998 No 22 >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Probab=99.28 E-value=1.6e-11 Score=82.13 Aligned_cols=109 Identities=13% Similarity=0.240 Sum_probs=89.7 Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH Q ss_conf 34334999986148997110578999999987653----------04778234899999972789869997214432332 Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205) Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205) ..++.+..++....+.++|||++-....+.+...+ .++.+...|..+.+.|.+++++|++++ .+.|.|+ T Consensus 222 ~~~~~~~~~~~~~~~~~~IIf~~s~~~~e~la~~l~~~g~~~~~~h~~l~~~eR~~i~~~F~~g~i~vLVAT-~a~~~GI 300 (523) T 1oyw_A 222 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VAFGMGI 300 (523) T ss_dssp SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-TTSCTTT T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCC T ss_conf 899999887765058847999844521999999986569752420488899999999999976998789971-1432677 Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 2432067589726899988802255557666542026577539999 Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169 (205) Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~ 169 (205) |... .+.||+|++|-|++.|.|.+||. -|.|+...|..++ T Consensus 301 D~p~-V~~VI~~~~P~s~~~Y~QriGRa-----GR~G~~g~~il~~ 340 (523) T 1oyw_A 301 NKPN-VRFVVHFDIPRNIESYYQETGRA-----GRDGLPAEAMLFY 340 (523) T ss_dssp CCTT-CCEEEESSCCSSHHHHHHHHTTS-----CTTSSCEEEEEEE T ss_pred CCCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCEEEEEEE T ss_conf 6003-76799948999999999884132-----4799963699996 No 23 >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Probab=99.25 E-value=4.9e-11 Score=79.41 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=88.7 Q ss_pred HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH Q ss_conf 4999986148997110578999999987653----------047782348999999727898699972144323322432 Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127 (205) Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~ 127 (205) ....+.+...+.++|||++.....+.+...+ .+.....+|....+.|++|+.+|++++ .+.+.|+|+. T Consensus 248 ~~~~~~~~~~~~k~iVF~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~R~~~~~~F~~g~~~iLv~T-~~~~~GiDip- 325 (400) T 1s2m_A 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRGIDIQ- 325 (400) T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSSCCCT- T ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE-HHHHCCCCCC- T ss_conf 77888763257727999853441177899998679967874245799999999999876998640320-0343355556- Q ss_pred HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH Q ss_conf 0675897268999888022555576665420265775399999838895899999999 Q gi|254780130|r 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205) Q Consensus 128 a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205) ..++||+|++|.|...|.|..||. -|.|+.- .++.|++++ |...++.+. T Consensus 326 ~V~~VI~~~~p~s~~~yiqr~GR~-----gR~g~~G--~ai~~~~~~--d~~~~~~i~ 374 (400) T 1s2m_A 326 AVNVVINFDFPKTAETYLHRIGRS-----GRFGHLG--LAINLINWN--DRFNLYKIE 374 (400) T ss_dssp TEEEEEESSCCSSHHHHHHHHCBS-----SCTTCCE--EEEEEECGG--GHHHHHHHH T ss_pred CCCEEEEECCCCCHHHHHHHHCCC-----CCCCCCE--EEEEEECHH--HHHHHHHHH T ss_conf 788899969999999999673434-----4699965--999986589--999999999 No 24 >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Probab=99.22 E-value=1.4e-10 Score=76.80 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=85.8 Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE Q ss_conf 489971105789999999876530----------4778234899999972789869997214432332243206758972 Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135 (205) Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~ 135 (205) ..+.++|||++-....+.+.+.|. ++.....|..+.+.|.+++.+|++++ .+.+.|+|+. .++++|+| T Consensus 236 ~~~~~~lIF~~~~~~~~~~~~~L~~~~~~~~~~h~~l~~~~r~~i~~~f~~g~~~vlVaT-~~l~~GiDip-~v~~Vi~~ 313 (367) T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-DVMSRGIDVN-DLNCVINY 313 (367) T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-TTHHHHCCCS-CCSEEEES T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE-CHHHCCCCCC-CCCEEEEE T ss_conf 068637999766477999999999759972544168856665321101016863189962-1212455677-88889996 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH Q ss_conf 689998880225555766654202657753999998388958999999999 Q gi|254780130|r 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205) Q Consensus 136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205) ++|.|+..|.|..||. -|.|+...+ +.|+.++ |.+.++.+.+ T Consensus 314 ~~p~s~~~~iQ~~GR~-----gR~g~~g~~--i~~~~~~--~~~~~~~i~~ 355 (367) T 1hv8_A 314 HLPQNPESYMHRIGRT-----GRAGKKGKA--ISIINRR--EYKKLRYIER 355 (367) T ss_dssp SCCSCHHHHHHHSTTT-----CCSSSCCEE--EEEECTT--SHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHC-----CCCCCCEEE--EEEECHH--HHHHHHHHHH T ss_conf 9998999999996356-----569895499--9997579--9999999999 No 25 >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Probab=99.20 E-value=3.4e-10 Score=74.73 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=81.1 Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE Q ss_conf 489971105789999999876530----------4778234899999972789869997214432332243206758972 Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135 (205) Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~ 135 (205) ....+++||++-....+.+.+.|. ++....+|..+++.|.+|+.+||+++ .+++.|+|+. ..++||+| T Consensus 298 ~~~~~~iIF~~t~~~a~~l~~~L~~~~~~~~~~h~~~~~~~R~~~l~~F~~g~~~ILvaT-d~~~rGlDip-~V~~VI~~ 375 (434) T 2db3_A 298 EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-SVASRGLDIK-NIKHVINY 375 (434) T ss_dssp HCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-GGGTSSCCCT-TCCEEEES T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCCC-CCCEEEEE T ss_conf 467349999434187999999987412453322456789999999999875998799977-8531577721-49789996 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC Q ss_conf 689998880225555766654202657753999998388 Q gi|254780130|r 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205) Q Consensus 136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205) ++|.|++.|.|..||. -|.|++.. .+.|++.. T Consensus 376 d~P~s~~~yihriGR~-----GR~g~~G~--ai~f~~~~ 407 (434) T 2db3_A 376 DMPSKIDDYVHRIGRT-----GRVGNNGR--ATSFFDPE 407 (434) T ss_dssp SCCSSHHHHHHHHTTS-----SCTTCCEE--EEEEECTT T ss_pred CCCCCHHHHHHHCCCC-----CCCCCCEE--EEEEECCH T ss_conf 9998989986432505-----47999538--99997717 No 26 >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Probab=99.19 E-value=1e-10 Score=77.67 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=85.2 Q ss_pred HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 34999986148997110578999999987653------047782348999999727898699972144323322432067 Q gi|254780130|r 57 KALEVIIEKANAAPIIVAYHFNSDLARLQKAF------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130 (205) Q Consensus 57 ~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~ 130 (205) ......+....+..+++|++.....+.+...+ .++.+...|+..++.|.+|+.+|++++ .+.+.|+|+. ..+ T Consensus 209 ~~~~~~~~~~~~~~~ii~~~t~~~~~~~~~~l~~~~~lh~~~~~~~R~~~~~~f~~g~~~iLvaT-~~~~~GiDip-~v~ 286 (337) T 2z0m_A 209 RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITT-DVASRGLDIP-LVE 286 (337) T ss_dssp HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-HHHHTTCCCC-CBS T ss_pred HHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCCCCC-CCC T ss_conf 56788886257862999998513579999865044340089999999999999877986589972-2554467876-888 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCH Q ss_conf 5897268999888022555576665420265775399999838895 Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176 (205) Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ti 176 (205) ++|+|++|.|+..|.|..||. -|.|++..| |.|++.+.. T Consensus 287 ~VI~~~~p~s~~~~iQr~GR~-----gR~g~~g~~--~~lv~~~~~ 325 (337) T 2z0m_A 287 KVINFDAPQDLRTYIHRIGRT-----GRMGRKGEA--ITFILNEYW 325 (337) T ss_dssp EEEESSCCSSHHHHHHHHTTB-----CGGGCCEEE--EEEESSCHH T ss_pred EEEEECCCCCHHHHHHHCCCC-----CCCCCCEEE--EEEECCCHH T ss_conf 899968999989997240104-----438995699--999888589 No 27 >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Probab=99.14 E-value=2.3e-10 Score=75.67 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=91.3 Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH Q ss_conf 34334999986148997110578999999987653----------04778234899999972789869997214432332 Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205) Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205) .+...+..+.......+++||+........+...+ .++.....|....+.|+.++.+|++++ .+.|.|+ T Consensus 236 ~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLv~T-d~~~~Gi 314 (391) T 1xti_A 236 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGRGM 314 (391) T ss_dssp GHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-CCCSSCB T ss_pred HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCC T ss_conf 578889888765302311355402268999999998659976875056889999899987640564399930-4545676 Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH Q ss_conf 243206758972689998880225555766654202657753999998388958999999999 Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205) Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205) |+.. .++||+|++|+|...|.|..||.. |.|+.-. ++.|++.. -|..+.+.+.+ T Consensus 315 Dip~-v~~VI~~~~P~~~~~y~qr~GR~G-----R~g~~g~--~i~l~~~~-~~~~~~~~i~~ 368 (391) T 1xti_A 315 DIER-VNIAFNYDMPEDSDTYLHRVARAG-----RFGTKGL--AITFVSDE-NDAKILNDVQD 368 (391) T ss_dssp CCTT-EEEEEESSCCSSHHHHHHHHCBCS-----SSCCCCE--EEEEECSH-HHHHHHHHHHH T ss_pred CCCC-CCEEEEECCCCCHHHHHHHHCCCC-----CCCCCEE--EEEEECCH-HHHHHHHHHHH T ss_conf 6888-999999799999899986724145-----7989648--99998845-68999999999 No 28 >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Probab=99.14 E-value=1e-10 Score=77.56 Aligned_cols=99 Identities=14% Similarity=0.256 Sum_probs=81.2 Q ss_pred HHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE Q ss_conf 6148997110578999999987653----------047782348999999727898699972144323322432067589 Q gi|254780130|r 64 EKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133 (205) Q Consensus 64 ~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI 133 (205) +...+.+.|||++.+...+.+.+.+ .++.....|..+.+.|.+++.+|++++ .+.|.|||+. ..+.|| T Consensus 263 ~~~~~~~~IIf~~tr~~~e~la~~L~~~g~~~~~~h~~~~~~~R~~i~~~F~~g~~~VLVAT-~a~g~GID~p-dVr~VI 340 (591) T 2v1x_A 263 GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGMGIDKP-DVRFVI 340 (591) T ss_dssp TTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC-TTSCTTCCCS-CEEEEE T ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CHHHCCCCCC-CCCEEE T ss_conf 60368847999830042899999999769816887088889999999999872468879980-4433577866-786899 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 726899988802255557666542026577539999 Q gi|254780130|r 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169 (205) Q Consensus 134 ~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~ 169 (205) +|++|-|++.|.|..||. -|-|+...|.+++ T Consensus 341 ~~~~P~s~~~y~Qr~GRa-----GRdG~~~~~illy 371 (591) T 2v1x_A 341 HHSMSKSMENYYQESGRA-----GRDDMKADCILYY 371 (591) T ss_dssp ESSCCSSHHHHHHHHTTS-----CTTSSCEEEEEEE T ss_pred ECCCCCCHHHHHHHHCCC-----CCCCCCEEEEEEE T ss_conf 928998999999883647-----7798952599997 No 29 >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens} Probab=99.10 E-value=6.8e-12 Score=84.15 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=85.8 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 23433499998614899711057899999998765----------30477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|+..|.+++......++|||++-....+.+... +.++.....|..+++.|++|+.+||+++ .+++.| T Consensus 318 ~~k~~~L~~ll~~~~~~~~iIF~~s~~~~~~~~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~iLVaT-d~~~rG 396 (479) T 3fmp_B 318 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-NVCARG 396 (479) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC-CCHHCC T ss_conf 8899999999984577727999721477899999997526751000454028999999999877998299979-602255 Q ss_pred HHHHHHCCEEEEECCCC------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC Q ss_conf 22432067589726899------9888022555576665420265775399999838 Q gi|254780130|r 123 LNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~------n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~ 173 (205) ||+. ..++||+|++|. +++.|.|.+||.. |.|++-.| +.|++. T Consensus 397 iDip-~V~~VI~yd~P~~~~~~~~~~~yihr~GR~G-----R~g~~G~a--i~~~~~ 445 (479) T 3fmp_B 397 IDVE-QVSVVINFDLPVDKDGNPDNETYLHRIGRTG-----RFGKRGLA--VNMVDS 445 (479) T ss_dssp --------------------------------------------------------- T ss_pred CCCC-CCCEEEEECCCCCCCCCCCCCEEEECCCCCC-----CCCCCEEE--EEEECC T ss_conf 8724-7889999799987555676110520460353-----69995189--999773 No 30 >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Probab=99.08 E-value=4.3e-10 Score=74.17 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=84.8 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEEC Q ss_conf 89971105789999999876530----------47782348999999727898699972144323322432067589726 Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136 (205) Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~ 136 (205) ++.+++||++.....+.+.+.+. ++....+|+...+.|.+++..++++|....++|+|... .+.+|+++ T Consensus 346 ~~~~~LI~~~~~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~~~~~~~~iivaT~~vl~~GiDip~-l~~vI~~~ 424 (510) T 2oca_A 346 KDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN-LHHVVLAH 424 (510) T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS-EEEEEESS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHCEECCCC-CCEEEEEC T ss_conf 42346678877886999999998538838999578757789999999756998599998796554225454-68999977 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEEECCC Q ss_conf 899988802255557666542026577-539999983889 Q gi|254780130|r 137 LWWDLEEHQQMIERIGVTRQRQAGFKR-AVFVYYLIAQNT 175 (205) Q Consensus 137 ~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~-~v~v~~l~~~~t 175 (205) |+-|+..+.|++||+ .|.+..+ .+.+|.++-.-+ T Consensus 425 p~kS~~~~iQ~iGR~-----lR~~~~K~~~~i~D~vd~~~ 459 (510) T 2oca_A 425 GVKSKIIVLQTIGRV-----LRKHGSKTIATVWDLIDDAG 459 (510) T ss_dssp CCCSCCHHHHHHHHH-----HTTTCCCCCCEEEEEEEECC T ss_pred CCCCHHHHHHHHHCC-----CCCCCCCCEEEEEEEECCHH T ss_conf 999889999997337-----86799985699999852677 No 31 >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Probab=99.05 E-value=6.5e-10 Score=73.19 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=86.6 Q ss_pred HHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE Q ss_conf 61489971105789999999876530----------47782348999999727898699972144323322432067589 Q gi|254780130|r 64 EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133 (205) Q Consensus 64 ~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI 133 (205) ....+.+++||+......+.+.+.|. ++....+|....+.|+.|+.+|++++ .+.+.|+|+.. .++|| T Consensus 272 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~R~~~~~~~~~g~~~vLv~T-d~~~~GiDip~-v~~VI 349 (417) T 2i4i_A 272 ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAARGLDISN-VKHVI 349 (417) T ss_dssp TCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-HHHHTTSCCCC-EEEEE T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-CCHHCCCCCCC-CCEEE T ss_conf 14455224554040999999999998689859996277428888666654225995399941-72214677778-87899 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 726899988802255557666542026577539999983889589999999999 Q gi|254780130|r 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205) Q Consensus 134 ~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205) +|++|.|+..|.|..||. -|.|++.. ++.|+++.. ..+.+.+.+. T Consensus 350 ~~~~P~s~~~yiqr~GRa-----gR~g~~G~--~~~~~~~~~--~~~~~~i~~~ 394 (417) T 2i4i_A 350 NFDLPSDIEEYVHRIGRT-----GRVGNLGL--ATSFFNERN--INITKDLLDL 394 (417) T ss_dssp ESSCCSSHHHHHHHHTTB-----CC--CCEE--EEEEECGGG--GGGHHHHHHH T ss_pred EECCCCCHHHHHHHHCCC-----CCCCCCEE--EEEEECHHH--HHHHHHHHHH T ss_conf 958999999998760404-----36999559--999973789--9999999999 No 32 >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Probab=99.05 E-value=1.4e-11 Score=82.41 Aligned_cols=121 Identities=14% Similarity=0.220 Sum_probs=90.2 Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH Q ss_conf 34334999986148997110578999999987653----------04778234899999972789869997214432332 Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205) Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205) .|...+.++++..++.+++||++-+...+.+.+.+ .++.+..+|....+.|++++.+|++++ .+.+.|+ T Consensus 245 ~~~~~~~~i~~~~~~~k~lIf~~s~~~a~~l~~~l~~~~~~~~~~~~~l~~~~R~~~~~~f~~~~~~ilv~T-~~l~~Gi 323 (394) T 1fuu_A 245 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLARGI 323 (394) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC-CHHHCCC T ss_conf 888899999972278838999556788999999887538764343578799999999999862354289740-2544357 Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH Q ss_conf 24320675897268999888022555576665420265775399999838895899999999 Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205) Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205) |+. ..+++|+|++|.|...|.|..||.. |.|+...| +.|++.+ |...++.+. T Consensus 324 Dip-~v~~VI~~~~p~s~~~yiQr~GR~g-----R~g~~g~~--~~~~~~~--d~~~~~~ie 375 (394) T 1fuu_A 324 DVQ-QVSLVINYDLPANKENYIHRIGRGG-----RFGRKGVA--INFVTNE--DVGAMRELE 375 (394) T ss_dssp -------------------------------------------------------------- T ss_pred CCC-CCCEEEEECCCCCHHHHHHHHCCCC-----CCCCCEEE--EEEECHH--HHHHHHHHH T ss_conf 777-8878999699999999998844077-----59894599--9997579--999999999 No 33 >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Probab=98.94 E-value=8.5e-09 Score=66.99 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=66.7 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE--------ECCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 477823489999997278986999721443233224320675897--------268999888022555576665420265 Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF--------FSLWWDLEEHQQMIERIGVTRQRQAGF 161 (205) Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~--------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205) ++.....|+.+.+.|++|.++|++++ .+++.|||+. ++++||. ...+.++..|.|..|| |-|.|. T Consensus 414 ~gl~~~eR~~v~~~F~~G~i~VLVaT-~vla~GIDiP-~v~vVI~~~~~~d~~~~~~~s~~~y~Q~~GR-----AGR~G~ 486 (1010) T 2xgj_A 414 SGLLPILKEVIEILFQEGFLKVLFAT-ETFSIGLNMP-AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGR-----AGRRGL 486 (1010) T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEEE-GGGGGSTTCC-BSEEEESCSEEECSSCEEECCHHHHHHHHTT-----BCCTTT T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEC-HHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHCC-----CCCCCC T ss_conf 89999999999998636975899963-2876789878-8279995575357755556888888847524-----888989 Q ss_pred CCCEEEEEEEECCCHHHHH Q ss_conf 7753999998388958999 Q gi|254780130|r 162 KRAVFVYYLIAQNTIDELV 180 (205) Q Consensus 162 ~~~v~v~~l~~~~tiEe~i 180 (205) .....++.+...+.-++.. T Consensus 487 d~~G~vii~~~~~~~~~~~ 505 (1010) T 2xgj_A 487 DDRGIVIMMIDEKMEPQVA 505 (1010) T ss_dssp CSSEEEEEEECSCCCHHHH T ss_pred CCCEEEEEEECCCCCHHHH T ss_conf 8844899995089888999 No 34 >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Probab=98.69 E-value=1.2e-07 Score=60.67 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=64.4 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE--------ECCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 477823489999997278986999721443233224320675897--------268999888022555576665420265 Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF--------FSLWWDLEEHQQMIERIGVTRQRQAGF 161 (205) Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~--------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205) ++.....|..+.+.|++|.++|++++ .+++.|||+. +.++||. +..|.++..|.|..||- -|.|. T Consensus 512 ~~l~~~~R~~v~~~F~~g~i~VLvaT-~vla~GiDiP-~~~vVi~~~~k~d~~~~~~~t~~~y~Q~~GRA-----GR~G~ 584 (1108) T 3l9o_A 512 SGLLPILKEVIEILFQEGFLKVLFAT-ETFSIGLNMP-AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA-----GRRGL 584 (1108) T ss_dssp SCSCHHHHHHHHHHHHHTCCCEEEEE-SCCCSCCCC---CEEEESCSEEESSSCEEECCHHHHHHHHHHS-----CCSSS T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEC-HHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-----CCCCC T ss_conf 88999999999998737995499963-3876678878-71799954653577555669999999997157-----88999 Q ss_pred CCCEEEEEEEECCCHHHH Q ss_conf 775399999838895899 Q gi|254780130|r 162 KRAVFVYYLIAQNTIDEL 179 (205) Q Consensus 162 ~~~v~v~~l~~~~tiEe~ 179 (205) ...-.++.++.++.-... T Consensus 585 D~~G~~iil~~~~~~~~~ 602 (1108) T 3l9o_A 585 DDRGIVIMMIDEKMEPQV 602 (1108) T ss_dssp CSSEEEEEEECCCCCHHH T ss_pred CCCEEEEEEECCCCCHHH T ss_conf 885389999579857889 No 35 >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus} Probab=98.59 E-value=4.3e-07 Score=57.59 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=60.4 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-----------ECCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 477823489999997278986999721443233224320675897-----------268999888022555576665420 Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-----------FSLWWDLEEHQQMIERIGVTRQRQ 158 (205) Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-----------~~~~~n~~~~~Qa~~Ri~~~r~hR 158 (205) ++.+...|..+.+.|.+|.++|++++ .+.+.|+|+. +.++||. +..|.++..|.|..||. -| T Consensus 320 ~~l~~~eR~~ie~~f~~g~i~vLvaT-~~la~GvdlP-~~~vVI~~~~~~~~~~~~~~~~~s~~~~~Q~~GRa-----GR 392 (715) T 2va8_A 320 AGLSKALRDLIEEGFRQRKIKVIVAT-PTLAAGVNLP-ARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA-----GR 392 (715) T ss_dssp TTSCHHHHHHHHHHHHTTCSCEEEEC-GGGGGSSCCC-BSEEEECCC--------------CHHHHHHHHTTB-----CC T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-----CC T ss_conf 89999999999999977998454313-7887479988-84799935732576444555678999998885030-----36 Q ss_pred CCCCCCEEEEEEEEC Q ss_conf 265775399999838 Q gi|254780130|r 159 AGFKRAVFVYYLIAQ 173 (205) Q Consensus 159 ~GQ~~~v~v~~l~~~ 173 (205) .|......++-+... T Consensus 393 ~g~d~~G~~~i~~~~ 407 (715) T 2va8_A 393 PGFDQIGESIVVVRD 407 (715) T ss_dssp TTTCSCEEEEEECSC T ss_pred CCCCCEEEEEEEECC T ss_conf 888870389999588 No 36 >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Probab=98.53 E-value=3.1e-07 Score=58.34 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=62.7 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-------ECCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 477823489999997278986999721443233224320675897-------2689998880225555766654202657 Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-------FSLWWDLEEHQQMIERIGVTRQRQAGFK 162 (205) Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~ 162 (205) ++.+...|..+.+.|.+|.++|++++ .+.+.|+|+. +.+++|. ++.+.++..|.|..||. -|.|.. T Consensus 304 ~~l~~~eR~~i~~~f~~g~i~VLvaT-~~l~~Gvdlp-~~~vVI~~~~~~~~~~~~~s~~~~~Q~~GRa-----GR~g~~ 376 (702) T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVAT-PTLAAGVNLP-ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA-----GRPGMD 376 (702) T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEEC-STTTSSSCCC-BSEEEECCSEEESSSEEECCHHHHHHHHTTB-----SCTTTC T ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEC-HHHHCCCCCC-CCEEEEEECCCCCCCCCCCCHHHHEEHHHCC-----CCCCCC T ss_conf 89999999999998645876642112-1132176799-8659998175347876789999973265506-----778888 Q ss_pred CCEEEEEEEECCCHH Q ss_conf 753999998388958 Q gi|254780130|r 163 RAVFVYYLIAQNTID 177 (205) Q Consensus 163 ~~v~v~~l~~~~tiE 177 (205) ..-.++.++.+..-+ T Consensus 377 ~~G~~iil~~~~~~~ 391 (702) T 2p6r_A 377 ERGEAIIIVGKRDRE 391 (702) T ss_dssp SCEEEEEECCGGGHH T ss_pred CCEEEEEEECCCCHH T ss_conf 760799997885349 No 37 >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Probab=97.90 E-value=3.2e-05 Score=47.21 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=60.6 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCC--------CCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 4778234899999972789869997214432332243206758972689--------99888022555576665420265 Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW--------WDLEEHQQMIERIGVTRQRQAGF 161 (205) Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~--------~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205) ++.+...|....+.|.+|+++|++++ .+.+.|+|+. +.+++|....+ .++..+.|..||. -|.|. T Consensus 302 ~~l~~~eR~~ve~~f~~g~i~vlv~T-~~l~~Gvdlp-~~~vVI~~~~~~~~~~~~~~~~~~~~Q~~GRa-----gR~g~ 374 (720) T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVAT-PTLSAGINTP-AFRVIIRDIWRYSDFGMERIPIIEVHQMLGRA-----GRPKY 374 (720) T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEEC-STTGGGCCCC-BSEEEECCSEECCSSSCEECCHHHHHHHHTTB-----CCTTT T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEE-HHHHCCCCCC-CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-----CCCCC T ss_conf 89999999999999976998268861-3554278976-75399995887787677759999999899984-----77777 Q ss_pred CCCEEEEEEEECCCHHH Q ss_conf 77539999983889589 Q gi|254780130|r 162 KRAVFVYYLIAQNTIDE 178 (205) Q Consensus 162 ~~~v~v~~l~~~~tiEe 178 (205) ...-.++-+.+.+.... T Consensus 375 ~~~g~~ii~~~~~~~~~ 391 (720) T 2zj8_A 375 DEVGEGIIVSTSDDPRE 391 (720) T ss_dssp CSEEEEEEECSSSCHHH T ss_pred CCCCEEEEEECCCCHHH T ss_conf 88776999968976599 No 38 >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Probab=97.89 E-value=2.5e-06 Score=53.38 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=62.8 Q ss_pred HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHH-HHHHHHHHHHHHCCCCCCCEEE Q ss_conf 047782348999999727898699972144323322432067589726899988802-2555576665420265775399 Q gi|254780130|r 89 PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQRQAGFKRAVFV 167 (205) Q Consensus 89 ~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~-Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205) .++...++|+.+++.|.+|+++||++| .+++.|+|+.. +++||.++.|.....+. |-.||. -|.|.+..|. T Consensus 620 HG~m~~~eR~~im~~Fr~Gk~~ILVaT-dVierGIDiPn-v~~VIi~dap~~~lsyLHQi~GRv-----GR~g~~G~~i- 691 (780) T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVST-TVIEVGIDVPR-ANVMVIENPERFGLAQLHQLRGRV-----GRGGQEAYCF- 691 (780) T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCS-SCCCSCSCCTT-CCEEEBCSCSSSCTTHHHHHHHTS-----CCSSTTCEEE- T ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEEC-HHHHCCCCCCC-CCEEEEECCCCCCHHHHHHHHCCC-----CCCCCCEEEE- T ss_conf 278999999999999985999999988-26545478325-868999799977689999872125-----7598955999- Q ss_pred EEEEECCCHHHHHHHHHHH Q ss_conf 9998388958999999999 Q gi|254780130|r 168 YYLIAQNTIDELVLQRLRT 186 (205) Q Consensus 168 ~~l~~~~tiEe~i~~~l~~ 186 (205) -+.+ ..++..+++|.. T Consensus 692 -ll~~--~~~~~~~~RL~~ 707 (780) T 1gm5_A 692 -LVVG--DVGEEAMERLRF 707 (780) T ss_dssp -CCCC--SCCHHHHHHHHH T ss_pred -EEEC--CCCHHHHHHHHH T ss_conf -9979--999799999999 No 39 >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Probab=97.82 E-value=3.2e-05 Score=47.26 Aligned_cols=93 Identities=9% Similarity=0.019 Sum_probs=63.1 Q ss_pred CCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE------ Q ss_conf 99711057899999998765304778----2--34899999972789869997214432332243206758972------ Q gi|254780130|r 68 AAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF------ 135 (205) Q Consensus 68 ~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~------ 135 (205) +.++|||++-....+.|...|.+... . +..+...+.|.+++.++++++ .+++.|+|+- .+.||.+ T Consensus 188 ~gk~LVFv~S~~~ae~la~~L~~~g~~v~~Lh~~l~~~~~~~~~~~~~~ilVaT-di~E~Gini~--~~~VId~~~~~~p 264 (451) T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-DISEMGANFR--AGRVIDPRRCLKP 264 (451) T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEEC-GGGGSSCCCC--CSEEEECCEEEEE T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCEEEEEC-HHHHHCCCCC--CEEEEECCCCEEE T ss_conf 999999959989999999999758983999089997999864348994299991-2365378649--7099989982666 Q ss_pred ----C----------CCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEE Q ss_conf ----6----------89998880225555766654202657-753999 Q gi|254780130|r 136 ----S----------LWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVY 168 (205) Q Consensus 136 ----~----------~~~n~~~~~Qa~~Ri~~~r~hR~GQ~-~~v~v~ 168 (205) + .|-|++.+.|..||+. |-|.. ...++| T Consensus 265 ~~~~d~~~~~~~~~~~pis~~s~~QR~GRvG-----R~~~~~~~~yiy 307 (451) T 2jlq_A 265 VILTDGPERVILAGPIPVTPASAAQRRGRIG-----RNPAQEDDQYVF 307 (451) T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSS-----CCTTCCCEEEEE T ss_pred EEEECCCCCEEEECCEEECHHHHHHHCCCCC-----CCCCCCCCEEEE T ss_conf 6631677780672314418999864010779-----998788878998 No 40 >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Probab=97.75 E-value=9.4e-05 Score=44.62 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=67.2 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHC-----------------CCCHHHHHHHHHHH---HCCCCCEEEECHHHHHHHHHHH Q ss_conf 899711057899999998765304-----------------77823489999997---2789869997214432332243 Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQ-----------------GRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQ 126 (205) Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~-----------------~~~~~~r~~~i~~f---~~~~~~Vll~~~~a~g~GlnL~ 126 (205) ...+.+||+.-....+.+...|.. +.....++..++.| .++..+|+++. ...++|++.. T Consensus 438 ~~~k~iif~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~k~~i~~f~~~~~~~~~Ilisv-~~L~tG~DvP 516 (590) T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-QLLTTGVDAP 516 (590) T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-STTTTTCCCT T ss_pred CCCCEEHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEC-CHHHHHHCHH T ss_conf 444201011889999999999998526664106751899825873558999999861315995699997-9275545858 Q ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEE Q ss_conf 2067589726899988802255557666542026---577539999983 Q gi|254780130|r 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG---FKRAVFVYYLIA 172 (205) Q Consensus 127 ~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G---Q~~~v~v~~l~~ 172 (205) . ++++||+.+.-|+..+.|++||.. |.- .|..+.|+.++. T Consensus 517 ~-~~~vv~~~~~~S~~~~~Q~iGR~~-----R~~~~~gK~~~~I~D~~g 559 (590) T 3h1t_A 517 T-CKNVVLARVVNSMSEFKQIVGRGT-----RLREDYGKLWFNIIDYTG 559 (590) T ss_dssp T-EEEEEEESCCCCHHHHHHHHTTSC-----CCBGGGTBSCEEEEECSS T ss_pred H-HCEEEEECCCCCHHHHHHHHHCCC-----CCCCCCCCCEEEEEECCC T ss_conf 6-298999527897889999996844-----658767988799994487 No 41 >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Probab=97.66 E-value=3e-05 Score=47.34 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=60.9 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE------- Q ss_conf 899711057899999998765304778----2--348999999727898699972144323322432067589------- Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV------- 133 (205) Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI------- 133 (205) .+.+++||++-..+.+.|.+.|..... . +......+.+.+++.+|++++ .+++.|+|| . ..+|| T Consensus 176 ~~gk~LVF~~s~~~~e~la~~L~~~g~~v~~lhg~~~~~~~~~~~~g~~~vvVaT-di~e~Gini-~-v~~VId~g~~~~ 252 (440) T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILAT-DIAEMGANL-C-VERVLDCRTAFK 252 (440) T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEES-SSTTCCTTC-C-CSEEEECCEEEE T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEEC-CHHHCCCCC-C-CEEEEECCCCCC T ss_conf 5898899989599999999999858981999879974887767553883299982-368636224-7-229997786321 Q ss_pred ------------EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf ------------72689998880225555766654202657753 Q gi|254780130|r 134 ------------FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205) Q Consensus 134 ------------~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205) .+..|-|++.+.|+.||. -|-|.+..+ T Consensus 253 ~~~~~~~~~~~~~~~~pis~as~~QR~GR~-----GR~~~~~~~ 291 (440) T 1yks_A 253 PVLVDEGRKVAIKGPLRISASSAAQRRGRI-----GRNPNRDGD 291 (440) T ss_dssp EEEETTTTEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCE T ss_pred CEEECCCCCEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCE T ss_conf 025458876798067689989998641067-----888888862 No 42 >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Probab=97.58 E-value=9.5e-05 Score=44.62 Aligned_cols=94 Identities=11% Similarity=0.227 Sum_probs=63.2 Q ss_pred CCCCEEEHHHHHHHH----HHHHHHHH--------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE Q ss_conf 899711057899999----99876530--------477823489999997278986999721443233224320675897 Q gi|254780130|r 67 NAAPIIVAYHFNSDL----ARLQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205) Q Consensus 67 ~~~kviVf~~f~~~l----~~l~~~~~--------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205) .+..+.+++.+.... +.+.+.++ +.....+|+.++..|.+|+++||++| .+.+.|||... ++++|. T Consensus 811 r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hg~m~~~~r~~~~~~F~~g~~~iLVaT-~ii~~GiDip~-v~~vii 888 (1151) T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-TIIETGIDIPT-ANTIII 888 (1151) T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES-STTGGGSCCTT-EEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-HHHHCCCCCCC-CCEEEE T ss_conf 1897689953666568999999976887658886055789999999999974885099964-03423567788-857999 Q ss_pred ECCC-CCHHHHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 2689-99888022555576665420265775399 Q gi|254780130|r 135 FSLW-WDLEEHQQMIERIGVTRQRQAGFKRAVFV 167 (205) Q Consensus 135 ~~~~-~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205) ++.+ +..+.+-|-.||. -|-|....|+. T Consensus 889 ~~a~~~~~~~lhQl~GR~-----GR~~~~~~a~l 917 (1151) T 2eyq_A 889 ERADHFGLAQLHQLRGRV-----GRSHHQAYAWL 917 (1151) T ss_dssp TTTTSSCHHHHHHHHTTC-----CBTTBCEEEEE T ss_pred ECCCCCCHHHHHHHHHHC-----CCCCCCEEEEE T ss_conf 357646899999885212-----54889549999 No 43 >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Probab=97.46 E-value=0.00024 Score=42.43 Aligned_cols=94 Identities=6% Similarity=-0.021 Sum_probs=61.9 Q ss_pred CCCEEEHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE-------- Q ss_conf 99711057899999998765304778------2348999999727898699972144323322432067589-------- Q gi|254780130|r 68 AAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV-------- 133 (205) Q Consensus 68 ~~kviVf~~f~~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI-------- 133 (205) ..++|||++-+.+.+.|.+.|..... .+........|.+++.+|++++ .++..|+|+ . .++|| T Consensus 355 ~gktLVFv~S~~~aeeLA~~L~~~G~~v~~LHg~l~~~e~~k~k~g~~~IIVAT-dIaE~Gvti-d-vd~VID~g~~~k~ 431 (618) T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-DISEMGANF-R-AGRVIDPRRCLKP 431 (618) T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEEC-GGGGTTCCC-C-CSEEEECCEEEEE T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCEEEEC-HHHHCCCEE-C-CEEEEECCCCEEE T ss_conf 899999979889999999999758980999179998788723568996399990-674307404-8-5799989984377 Q ss_pred --EEC----------CCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEE Q ss_conf --726----------899988802255557666542026-577539999 Q gi|254780130|r 134 --FFS----------LWWDLEEHQQMIERIGVTRQRQAG-FKRAVFVYY 169 (205) Q Consensus 134 --~~~----------~~~n~~~~~Qa~~Ri~~~r~hR~G-Q~~~v~v~~ 169 (205) +++ .|-+++...|+.||. -|-| |...+++|. T Consensus 432 vi~~d~~~~v~~l~~~piS~aSa~QR~GRv-----GR~~~~~~~~Yvy~ 475 (618) T 2whx_A 432 VILTDGPERVILAGPIPVTPASAAQRRGRI-----GRNPAQEDDQYVFS 475 (618) T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCEEEEEC T ss_pred EEEECCCCCCEEEEEEEECHHHHHHHCCCC-----CCCCCCCCCEEEEC T ss_conf 774358889367311765899976400266-----89987788689987 No 44 >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Probab=97.42 E-value=0.0002 Score=42.82 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=64.2 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE----- Q ss_conf 899711057899999998765304778------234899999972789869997214432332243206758972----- Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF----- 135 (205) Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~----- 135 (205) .+.+++||++-..+.+.+.+.|.+... ..........|.+++.+|++++ .+++.|+|+ . ...||.+ T Consensus 170 ~~g~iLVFv~s~~~~~~la~~L~~~g~~v~~lhg~~~~~~~~~~~~~~~~ilVaT-~i~E~GI~i-d-v~~VId~g~~~~ 246 (431) T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITT-DISEMGANF-K-ADRVIDPRKTIK 246 (431) T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEEC-GGGGTSCCC-C-CSEEEECCEEEE T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEC-CHHHHCCCC-C-CEEEEECCCCCC T ss_conf 4898799979899999999999868990999679999999998767997699978-769837244-8-608997786441 Q ss_pred ------------CCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEC Q ss_conf ------------6899988802255557666542026-5775399999838 Q gi|254780130|r 136 ------------SLWWDLEEHQQMIERIGVTRQRQAG-FKRAVFVYYLIAQ 173 (205) Q Consensus 136 ------------~~~~n~~~~~Qa~~Ri~~~r~hR~G-Q~~~v~v~~l~~~ 173 (205) ..|-|++...|..||. -|.+ +...+++|..-+. T Consensus 247 ~~~~~~~~~~~~~~~is~as~~QR~GR~-----GR~~~g~~~~y~y~~~~~ 292 (431) T 2v6i_A 247 PILLDGRVSMQGPIAITPASAAQRRGRI-----GRNPEKLGDIYAYSGNVS 292 (431) T ss_dssp EEEETTEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCCEEEECSCCC T ss_pred EEECCCCEEEEEEECCCHHHHHHHHHCC-----CCCCCCCCEEEEECCCCC T ss_conf 2647999788524506899998543255-----879899615999777788 No 45 >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Probab=97.39 E-value=3.7e-05 Score=46.87 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=61.4 Q ss_pred HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCC----CH--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEE Q ss_conf 9999861489971105789999999876530477----82--34899999972789869997214432332243206758 Q gi|254780130|r 59 LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----TL--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132 (205) Q Consensus 59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~----~~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~v 132 (205) +..+.+ .+.+++||++-..+.+.+.+.|.... .. +......+.|.+|+.+|++++ ..++.|+|+. .+.| T Consensus 183 ~~~i~~--~~gk~LVFv~s~~~ae~la~~L~~~g~~v~~lh~~l~~~~~~~~~~g~~~vlVAT-di~E~Gidi~--v~~V 257 (459) T 2z83_A 183 YEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITT-DISEMGANFG--ASRV 257 (459) T ss_dssp CHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEES-SCC---CCCS--CSEE T ss_pred HHHHHH--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEC-HHHHHCCCCC--CEEE T ss_conf 999996--2899999979799999999999868990999689898999965337994399982-4887179779--8499 Q ss_pred EE----------ECC----------CCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEE Q ss_conf 97----------268----------999888022555576665420-2657753999 Q gi|254780130|r 133 VF----------FSL----------WWDLEEHQQMIERIGVTRQRQ-AGFKRAVFVY 168 (205) Q Consensus 133 I~----------~~~----------~~n~~~~~Qa~~Ri~~~r~hR-~GQ~~~v~v~ 168 (205) |- +++ |-|++...|..||. -| .|+.-.+++| T Consensus 258 ID~g~~~~~~~~~~~~~~~~~~~~~pis~as~~QR~GR~-----GR~~g~~~~~y~y 309 (459) T 2z83_A 258 IDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRV-----GRNPNQVGDEYHY 309 (459) T ss_dssp EECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTS-----SCCTTCCCEEEEE T ss_pred EECCCCEEEEEEECCCCCEEEECCEEECHHHHHHHHHCC-----CCCCCCCEEEEEE T ss_conf 979983467873268888177031566799984124157-----8888886379997 No 46 >2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Probab=97.06 E-value=0.00019 Score=42.90 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=54.6 Q ss_pred CCCEEEHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC---- Q ss_conf 99711057899999998765304778------23489999997278986999721443233224320675897268---- Q gi|254780130|r 68 AAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL---- 137 (205) Q Consensus 68 ~~kviVf~~f~~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~---- 137 (205) +.+++||++-..+.+.+.+.|.+... .+.++..+..|.+++.+|++++ .++..|+|| . ...||-+.. T Consensus 410 ~G~iLVFv~s~~eie~la~~L~~~g~~v~~Lhs~l~~~~~~k~~~G~~kVVVAT-nIaEtGvTI-d-v~~VID~G~~vk~ 486 (673) T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITT-DISEMGANF-G-ASRVIDCRKSVKP 486 (673) T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEEC-GGGGTTCCC-C-CSEEEECCEECCE T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCEEEEEEC-CHHHCCEEC-C-EEEEEECCCEEEE T ss_conf 999999939989999999999878984999068897776734669984699972-547705521-6-0699978970566 Q ss_pred ----------------CCCHHHHHHHHHHH Q ss_conf ----------------99988802255557 Q gi|254780130|r 138 ----------------WWDLEEHQQMIERI 151 (205) Q Consensus 138 ----------------~~n~~~~~Qa~~Ri 151 (205) |-|.+...|+.||. T Consensus 487 ~~~~~~~~~~~~l~~~pIS~ASa~QR~GRa 516 (673) T 2wv9_A 487 TILDEGEGRVILSVPSAITSASAAQRRGRV 516 (673) T ss_dssp EEECSTTCEEEECCSEECCHHHHHHHHTTS T ss_pred EEEECCCCCEEEEEEEEECHHHHHHHCCCC T ss_conf 764078886788655421799986415177 No 47 >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Probab=96.52 E-value=0.015 Score=32.51 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=71.6 Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861--4899711057899999998765304778--------23489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|..++.+-+.. ..|+||+|.+...+..+.|.+.|..... ...++..+-..--..-.|.+++ ..||-| T Consensus 457 ~~k~~ai~~~i~~~~~~grpVLIgt~sv~~se~ls~~L~~~~i~~~vLna~~~~~Ea~iia~AG~~g~VTIAT-nmAGRG 535 (822) T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIAT-NMAGRG 535 (822) T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEE-TTTTTT T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCHHEECCCCHHHHHHHHHHCCCCCEEEEEC-CCCCCC T ss_conf 9999999999999975599579994407989999999997698131001452787899998448999299845-324699 Q ss_pred HHHHH-------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 22432-------06758972689998880225555766654202657753999 Q gi|254780130|r 123 LNLQY-------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205) Q Consensus 123 lnL~~-------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205) .+... +.=+||--.++-| .+++++.++|+-|-|..-....| T Consensus 536 tDI~l~~~v~~~GGLhVi~t~~~es-----~Rid~Ql~GR~gRQGdpG~~~~~ 583 (822) T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHES-----RRIDNQLRGRAGRQGDPGESIFF 583 (822) T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSS-----HHHHHHHHTTSSCSSCCCEEEEE T ss_pred CCCCCCHHHHHCCCCEEEEECCCCH-----HHHHHHHCCCCCCCCCCCCEEEE T ss_conf 8866635589828976864004610-----77888862702027899850587 No 48 >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Probab=96.38 E-value=0.015 Score=32.45 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=72.9 Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCC-CCEEEECHHHHHH Q ss_conf 2343349999861--4899711057899999998765304778--------234899999972789-8699972144323 Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGK-IPLLFAHPASCGH 121 (205) Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~-~~Vll~~~~a~g~ 121 (205) ..|..++.+-+.. ..|+||+|.+.....-+.|.+.|..... ...++..+-. +.|. -.|.+++ ..||- T Consensus 424 ~~k~~ai~~ei~~~~~~grpVLvgt~sv~~se~ls~~L~~~~i~h~vLnak~~~~Ea~Iia-~AG~~g~VTIAT-NMAGR 501 (853) T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVA-QAGYPAAVTIAT-NMAGR 501 (853) T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHH-TTTSTTCEEEEE-SCCSS T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHH-HCCCCCCEEEEC-CCCCC T ss_conf 7889999999999997189779984249879999999987486076763233065899998-458999779841-10147 Q ss_pred HHHHHH------------------------------------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 322432------------------------------------06758972689998880225555766654202657753 Q gi|254780130|r 122 GLNLQY------------------------------------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205) Q Consensus 122 GlnL~~------------------------------------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205) |.+..- +.=+||--.++-| .+++++.++|+-|-|..-.. T Consensus 502 GTDIkLg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVi~Ter~es-----~Rid~QlrGR~gRQGdpGss 576 (853) T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHES-----RRIDNQLRGRSGRQGDAGSS 576 (853) T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSS-----HHHHHHHHTTSSGGGCCEEE T ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----HHHHHHHCCCCCCCCCCCCE T ss_conf 7575467751012210248208899999999998765566349828996576652-----26777751610026999850 Q ss_pred EEEEEEECC Q ss_conf 999998388 Q gi|254780130|r 166 FVYYLIAQN 174 (205) Q Consensus 166 ~v~~l~~~~ 174 (205) ..| +-.+| T Consensus 577 ~f~-lsleD 584 (853) T 2fsf_A 577 RFY-LSMED 584 (853) T ss_dssp EEE-EETTS T ss_pred EEE-EECCH T ss_conf 577-65661 No 49 >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Probab=96.23 E-value=0.025 Score=31.20 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=72.2 Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCC-CCEEEECHHHHHH Q ss_conf 2343349999861--4899711057899999998765304778--------234899999972789-8699972144323 Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGK-IPLLFAHPASCGH 121 (205) Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~-~~Vll~~~~a~g~ 121 (205) ..|+.++.+-+.+ ..|+||+|+|......+.|...|..... ...++..+-. +.|. -.|.+++ ..||- T Consensus 443 ~~k~~aii~~i~~~~~~grPVLVgt~si~~se~ls~~L~~~~i~h~vLnak~~e~Ea~IIa-~AG~~G~VTIAT-NMAGR 520 (922) T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIA-VAGRRGGVTVAT-NMAGR 520 (922) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHH-TTTSTTCEEEEE-TTCST T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHH-HCCCCCEEEEEE-CHHCC T ss_conf 9999999999999996499779974229889999999997699402213002165676787-079987499970-02138 Q ss_pred HHHHH---------------------------------------------------HHCCEEEEECCCCCHHHHHHHHHH Q ss_conf 32243---------------------------------------------------206758972689998880225555 Q gi|254780130|r 122 GLNLQ---------------------------------------------------YGGNILVFFSLWWDLEEHQQMIER 150 (205) Q Consensus 122 GlnL~---------------------------------------------------~a~~~vI~~~~~~n~~~~~Qa~~R 150 (205) |.+.. .+.=+||--.++-| .++++ T Consensus 521 GTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVIgTerhes-----rRiD~ 595 (922) T 1nkt_A 521 GTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHES-----RRIDN 595 (922) T ss_dssp TCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSS-----HHHHH T ss_pred CCCEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-----HHHHH T ss_conf 7570158862022444443203564358377998887777788898887667787539828995045613-----77887 Q ss_pred HHHHHHHCCCCCCCEEEE Q ss_conf 766654202657753999 Q gi|254780130|r 151 IGVTRQRQAGFKRAVFVY 168 (205) Q Consensus 151 i~~~r~hR~GQ~~~v~v~ 168 (205) +.++|+-|=|+.-....| T Consensus 596 QlrGRagRQGdpGss~f~ 613 (922) T 1nkt_A 596 QLRGRSGRQGDPGESRFY 613 (922) T ss_dssp HHHHTSSGGGCCEEEEEE T ss_pred HHCCCCCCCCCCCCEEEE T ss_conf 750532479999725998 No 50 >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B* Probab=95.90 E-value=0.021 Score=31.61 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEEE Q ss_conf 348999999727898699972144323322432067589726899988802255557666542026--577539999983 Q gi|254780130|r 95 DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIA 172 (205) Q Consensus 95 ~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G--Q~~~v~v~~l~~ 172 (205) +.+...+++|.++++++++.. ..-.+|++... .++ +|+++|.+.....||++|.. |.- -|.-.+|..++ T Consensus 636 ~~~~~l~~~fk~~~~~Ilivv-dmL~TGfDvP~-l~~-lyldk~~~~~~liQaigR~n-----R~~~~~K~~g~IvD~~- 706 (1038) T 2w00_A 636 NYYRDLAQRVKNQDIDLLIVV-GMFLTGFDAPT-LNT-LFVDKNLRYHGLMQAFSRTN-----RIYDATKTFGNIVTFR- 706 (1038) T ss_dssp HHHHHHHHHHHTTSSSEEEES-STTSSSCCCTT-EEE-EEEESCCCHHHHHHHHHTTC-----CCCCTTCCSEEEEESS- T ss_pred HHHHHHHHHHCCCCCEEEEEH-HHHHCCCCCCC-CEE-EEEECCCCCCCHHHHHHHHC-----CCCCCCCCCEEEEEEC- T ss_conf 889999986126896299980-36435788502-407-99817888450999866743-----8777998877999956- Q ss_pred CCCHHHHHHHHH Q ss_conf 889589999999 Q gi|254780130|r 173 QNTIDELVLQRL 184 (205) Q Consensus 173 ~~tiEe~i~~~l 184 (205) | +.+.+-+.+ T Consensus 707 -~-~~~~~~~a~ 716 (1038) T 2w00_A 707 -D-LERSTIDAI 716 (1038) T ss_dssp -C-CHHHHHHHH T ss_pred -C-HHHHHHHHH T ss_conf -6-099999999 No 51 >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 1m6n_A 1m74_A* 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Probab=95.87 E-value=0.036 Score=30.34 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=69.2 Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCC-CCEEEECHHHHHH Q ss_conf 2343349999861--4899711057899999998765304778----2----34899999972789-8699972144323 Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGK-IPLLFAHPASCGH 121 (205) Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~-~~Vll~~~~a~g~ 121 (205) ..|+.++.+-+.. ..|++|+|++......+.+...+..... . ..++..+-. +.|. -.|.|++ ..||- T Consensus 415 ~~k~~ai~~~i~~~~~~grpVLIgt~si~~se~ls~~l~~~~i~~~vLnak~~e~Ea~iIa-~AG~~G~VTIAT-nmAGR 492 (844) T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE-EAGQKGAVTIAT-NMAGR 492 (844) T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT-TTTSTTCEEEEE-TTSST T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHH-HHCCCCEEEEEC-HHHCC T ss_conf 4889999999999986588669998407867999999887275066652223575899999-637788699951-35428 Q ss_pred HHHHHH-------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC Q ss_conf 322432-------06758972689998880225555766654202657753999998388 Q gi|254780130|r 122 GLNLQY-------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205) Q Consensus 122 GlnL~~-------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205) |.+... +.=+||--.++-| .+++++.++|+-|=|+.-....+ +-.++ T Consensus 493 GTDIkl~~~v~~~GGLhVI~T~~~es-----~Rid~Ql~GRtgRQGdpGss~~~-lsled 546 (844) T 1tf5_A 493 GTDIKLGEGVKELGGLAVVGTERHES-----RRIDNQLRGRSGRQGDPGITQFY-LSMED 546 (844) T ss_dssp TCCCCCCTTSGGGTSEEEEESSCCSS-----HHHHHHHHTTSSGGGCCEEEEEE-EETTS T ss_pred CCCCCCCCCCHHHCCCEEEEECCCCH-----HHHHHHHHCHHCCCCCCCEEEEE-EECCH T ss_conf 88867553103424727987234721-----77898873323037998607898-51566 No 52 >3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A Probab=95.05 E-value=0.006 Score=34.67 Aligned_cols=99 Identities=10% Similarity=0.043 Sum_probs=55.6 Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH--------------- Q ss_conf 4899711057899999998765304778---2348999999727898699972144323322432--------------- Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY--------------- 127 (205) Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~~~~~---~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~--------------- 127 (205) ..+.+++||++-+.+.+.+...+..... .-.+......+..+..++++++ .+...|+|... T Consensus 171 ~k~gk~lVFv~Sk~eve~La~~L~~~g~~v~~lh~~l~~~~~~~~~~~iVVAT-~i~e~Git~~~~~VIdt~~~v~~~ld 249 (437) T 3kqn_A 171 IKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDVSVIPTSGDVIVVAT-DALMTGFTGDFDSVIDCNTCVTQTVD 249 (437) T ss_dssp TSSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEEC-GGGSSSCCCCBSEEEECCEEEEEEEE T ss_pred HCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCEEEEEC-HHHHHCCCCCCEEEEECCCEEEEEEC T ss_conf 24688899959899999999999858994997678999667467997599983-58883888896499989976798874 Q ss_pred ----HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC Q ss_conf ----06758972689998880225555766654202657753999998388 Q gi|254780130|r 128 ----GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205) Q Consensus 128 ----a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205) ....++.++.|.|.+.+.|+.||.. | |+.. +|++++.+ T Consensus 250 ~d~~~~~~vi~~~~P~s~~syiQR~GRtG-----R-gk~G---~y~~~~~~ 291 (437) T 3kqn_A 250 FSLDPTFTIETTTVPQDAVSRSQRRGRTG-----R-GRMG---IYRFVTPG 291 (437) T ss_dssp CCCSSSCEEEEEEEECBHHHHHHHHTTBC-----S-SSCE---EEEESSCC T ss_pred CCCCCEEEEEECCCCCCHHHHHCCCCCCC-----C-CCCE---EEEEEECC T ss_conf 78995278980656889889854433738-----7-9980---89999897 No 53 >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Probab=94.78 E-value=0.095 Score=28.01 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=46.0 Q ss_pred HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH---HCC Q ss_conf 99998614899711057899999998765304778-----2348999999727898699972144323322432---067 Q gi|254780130|r 59 LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY---GGN 130 (205) Q Consensus 59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~-----~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~---a~~ 130 (205) +.+++...+|. ++||..-...++.+.+.+.+... .+......++|.+++.-+|.+...+..+|++|.. .+. T Consensus 376 i~~~~~~~~~~-~lvlf~S~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~v~~gs~~EGvD~~g~~~~~r 454 (540) T 2vl7_A 376 LKRIYENSSKS-VLVFFPSYEMLESVRIHLSGIPVIEENKKTRHEEVLELMKTGKYLVMLVMRAKESEGVEFREKENLFE 454 (540) T ss_dssp HHHHHHTCSSE-EEEEESCHHHHHHHHTTCTTSCEEESTTTCCHHHHHHHHHTSCCEEEEEC---------------CEE T ss_pred HHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCEEECCCEECCCCCCEE T ss_conf 99999846787-69975869999999999669957996885449999999846995899973763606812089988563 Q ss_pred EEEEECCCCC Q ss_conf 5897268999 Q gi|254780130|r 131 ILVFFSLWWD 140 (205) Q Consensus 131 ~vI~~~~~~n 140 (205) .+|...+||- T Consensus 455 ~vii~~lPf~ 464 (540) T 2vl7_A 455 SLVLAGLPYP 464 (540) T ss_dssp EEEEESCCCC T ss_pred EEEEECCCCC T ss_conf 8999788989 No 54 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} Probab=94.37 E-value=0.0061 Score=34.59 Aligned_cols=119 Identities=13% Similarity=0.217 Sum_probs=75.8 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-CCCC---------HHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530-4778---------23489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-QGRT---------LDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-~~~~---------~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|++.|.++---..--.-||||.-+.+.+.|..+.. +|-+ -..|..+.+.|.-|..+|++.+ ..-+-| T Consensus 342 ehkynvlvelyglltigqsiifckkkdtaeeiarrmtadghtvacltgnlegaqrdaimdsfrvgtskvlvtt-nviarg 420 (508) T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT-NVIARG 420 (508) T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEEC-C----- T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHEECCCCEEEEEC-CEEECC T ss_conf 4333308987646532857899825772999999745699578885178420346666765124652499981-214226 Q ss_pred HHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHH Q ss_conf 224320675897268999------888022555576665420265775399999838895899 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~ 179 (205) ++.. ..|.++.||.|.. |..|...++|- -|+|... |-+-...-+.||||- T Consensus 421 idvs-qvnlvvnydmpldqagrpdpqtylhrigrt-----grfgrvg-vsinfvhdkksweem 476 (508) T 3fho_A 421 IDVS-QVNLVVNYDMPLDQAGRPDPQTYLHRIGRT-----GRFGRVG-VSINFVHDKKSWEEM 476 (508) T ss_dssp CCCT-TCCEEEC----CC-----CTHHHHHTTSCC-----C-----C-EEEEEECTTTSSSSH T ss_pred CCHH-HEEEEEECCCCCCCCCCCCHHHHHHHCCCC-----CCCCEEE-EEEEEEECCCCHHHH T ss_conf 6642-456899358860014898768899873456-----7454036-789875255579998 No 55 >2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum} Probab=93.94 E-value=0.27 Score=25.52 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=50.4 Q ss_pred HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH-HC Q ss_conf 499998614899711057899999998765304-------7782348999999727898699972144323322432-06 Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY-GG 129 (205) Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~-------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~-a~ 129 (205) .+.+++...+|..+|.|+.|. .++.+...+.. +.....+...++.|..+...++++-..+..+|+||.. .+ T Consensus 421 ~i~~~~~~~~g~~LVlf~Sy~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~v~~~s~~EGiDl~g~~~ 499 (602) T 2vsf_A 421 VIEDIILKVKKNTIVYFPSYS-LMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNEL 499 (602) T ss_dssp HHHHHHHHHCSCEEEEESSHH-HHHHHHHHCCSCCCCCCTTCCHHHHHHHHHHHHHSCCCEEEETTSGGGCC-----CCC T ss_pred HHHHHHHHHCCCEEEEECCHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCE T ss_conf 999999985278299944399-9999999862655667515778889999999733798599995775023602799976 Q ss_pred CEEEEECCCCC Q ss_conf 75897268999 Q gi|254780130|r 130 NILVFFSLWWD 140 (205) Q Consensus 130 ~~vI~~~~~~n 140 (205) ..+|...+||- T Consensus 500 ~~viI~~lPfp 510 (602) T 2vsf_A 500 EMIILAGLPFP 510 (602) T ss_dssp CEEEESSCCCC T ss_pred EEEEEEECCCC T ss_conf 79999837999 No 56 >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus HB8} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Probab=89.95 E-value=0.84 Score=22.77 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=79.8 Q ss_pred HHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 343349999861--4899711057899999998765304778----------2348999999727898699972144323 Q gi|254780130|r 54 EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 54 ~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----------~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) ..++.|.+-+.. ..|.+|+|.+.-+.-.+.|...|.+... .-.|..+++.+..|++.|+++. .-..+ T Consensus 423 gq~d~L~~EI~~~~~~g~rVlv~t~Tk~~aErL~e~L~d~gI~a~ylhsd~d~~er~ei~~~lr~G~~dVlvgi-nlLre 501 (664) T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-NLLRE 501 (664) T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-CCCCT T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCC T ss_conf 55578999999999779859999477678999999998779738994688624679999988607973699996-76424 Q ss_pred HHHHHHHCCEEEEECCCC-----CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 322432067589726899-----988802255557666542026577539999983889589999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWW-----DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~-----n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205) |+.|.. ...++..|-+- |.....|-+||-+ |-- .-.|..|-=-..+++.+.|-++-+++ T Consensus 502 G~dlPe-v~Lv~I~daD~~GflR~~~sliq~~graa-----r~~-~g~~i~yad~~t~~~~~~~~~t~rrr 565 (664) T 1c4o_A 502 GLDIPE-VSLVAILDADKEGFLRSERSLIQTIGRAA-----RNA-RGEVWLYADRVSEAMQRAIEETNRRR 565 (664) T ss_dssp TCCCTT-EEEEEETTTTSCSGGGSHHHHHHHHGGGT-----TST-TCEEEEECSSCCHHHHHHHHHHHHHH T ss_pred CCCCCC-CEEEEEECCCCCCCCCCCHHHHHHHHHHH-----HCC-CCEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 666754-01899952542243447504888888887-----446-87299980666099999999998899 No 57 >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Probab=85.41 E-value=1.6 Score=21.18 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=42.1 Q ss_pred HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC---HH-HHHHHHHHHHCCCCCEEEEC-HHHHHHHHHHHH----HC Q ss_conf 99998614899711057899999998765304778---23-48999999727898699972-144323322432----06 Q gi|254780130|r 59 LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LD-KDPCTIQEWNEGKIPLLFAH-PASCGHGLNLQY----GG 129 (205) Q Consensus 59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~---~~-~r~~~i~~f~~~~~~Vll~~-~~a~g~GlnL~~----a~ 129 (205) +..+++..+|..++.|+.| ..++.+.+.+..... .+ ......+.+++++..++++. ..+..+|++|.- ++ T Consensus 385 i~~~~~~~~g~~lvlf~S~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~v~~~s~~EGiDl~gd~~~~l 463 (551) T 3crv_A 385 LLKIYFQAKANVLVVFPSY-EIMDRVMSRISLPKYVESEDSSVEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLI 463 (551) T ss_dssp HHHHHHHCSSEEEEEESCH-HHHHHHHTTCCSSEEECCSSCCHHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESE T ss_pred HHHHHHHHCCCEEEEECCH-HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEECCEEECCEECCCCCCCCC T ss_conf 9999997279759994339-999999986288455547884199999998658984999961560412301599841040 Q ss_pred CEEEEECCCCC Q ss_conf 75897268999 Q gi|254780130|r 130 NILVFFSLWWD 140 (205) Q Consensus 130 ~~vI~~~~~~n 140 (205) ..+|...+||- T Consensus 464 ~~viI~~lPfp 474 (551) T 3crv_A 464 SDVVIVGIPYP 474 (551) T ss_dssp EEEEEESCCCC T ss_pred EEEEEEECCCC T ss_conf 28999807999 No 58 >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8} Probab=36.72 E-value=19 Score=15.24 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHH Q ss_conf 2343349999861--489971105789999999876530 Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89 (205) Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~ 89 (205) ..|+.++.+-+.+ ..|+||+|-|...+.-+.|...|. T Consensus 426 ~~k~~Ai~~ei~~~~~~grPVLvgT~sIe~Se~ls~~L~ 464 (997) T 2ipc_A 426 KGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997) T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH T ss_conf 999999999999999749988997585588899999987 No 59 >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Probab=31.70 E-value=16 Score=15.64 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.9 Q ss_pred EEEEECCCCCHHHHHHHHHHHH Q ss_conf 5897268999888022555576 Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIG 152 (205) Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~ 152 (205) -+||+||||....+......+. T Consensus 127 DlIFlDPPY~~~~~~~~l~~L~ 148 (201) T 2ift_A 127 DVVFLDPPFHFNLAEQAISLLC 148 (201) T ss_dssp EEEEECCCSSSCHHHHHHHHHH T ss_pred CEEEECCCCCCCHHHHHHHHHH T ss_conf 5588579755527999999999 No 60 >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Probab=29.94 E-value=11 Score=16.60 Aligned_cols=104 Identities=11% Similarity=0.136 Sum_probs=50.6 Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHH----------CCC---------CHHHHHHHHHHHHCC--------CCCEEEECHHH Q ss_conf 489971105789999999876530----------477---------823489999997278--------98699972144 Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFP----------QGR---------TLDKDPCTIQEWNEG--------KIPLLFAHPAS 118 (205) Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~---------~~~~r~~~i~~f~~~--------~~~Vll~~~~a 118 (205) .....++||-.-..+++.+.+.+. +.. .... +....-|+.+ .-+|++++ .. T Consensus 301 ~~~G~ILVFLpg~~eI~~~~~~L~~~~~~~~~~~~~~~~~ilpL~s~l~~-~~q~~vf~~~p~~~~~~~~RKIIlaT-NI 378 (773) T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPP-HQQQRIFEPAPESHNGRPGRKVVIST-NI 378 (773) T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCH-HHHGGGGSCCCCCSSSSCCEEEEEEC-TH T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-HHHHHHCCCCCCCCCCCCCCEEEEEC-CC T ss_conf 79888687458779999999999875433200147886389866356997-87644305698777788764599842-60 Q ss_pred HHHHHHHHHHCCEEE--------EECCCCCH-------HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHH Q ss_conf 323322432067589--------72689998-------880225555766654202657753999998388958 Q gi|254780130|r 119 CGHGLNLQYGGNILV--------FFSLWWDL-------EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177 (205) Q Consensus 119 ~g~GlnL~~a~~~vI--------~~~~~~n~-------~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiE 177 (205) |-.++|+. ....|| .|++.-.. ..-.+|..| +-|.|.+.+-.+|+|.++...+ T Consensus 379 AETSiTI~-~v~yVIDsG~~k~~~yd~~~~~~~L~~~~iSkasa~QR-----~GRAGR~~pG~CyRLyt~~~~~ 446 (773) T 2xau_A 379 AETSLTID-GIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQR-----AGRAGRTRPGKCFRLYTEEAFQ 446 (773) T ss_dssp HHHTCCCT-TEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHH-----HHGGGSSSSEEEEESSCHHHHH T ss_pred HHHCCCCC-CCEEEECCCCCEEEECCCCCCCEECCCEECCHHHHHHC-----CCCCCCCCCCEEEECCCHHHHH T ss_conf 65322224-71499748863210004437820246310344416550-----4421578997177523799973 No 61 >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46 Probab=24.17 E-value=26 Score=14.48 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.8 Q ss_pred EEEEECCCCCHHHHHHHHHHHH Q ss_conf 5897268999888022555576 Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIG 152 (205) Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~ 152 (205) -+||+||||.-..+.+....+. T Consensus 124 DlIflDPPY~~~~~~~~l~~l~ 145 (202) T 2fpo_A 124 NIVFVDPPFRRGLLEETINLLE 145 (202) T ss_dssp EEEEECCSSSTTTHHHHHHHHH T ss_pred CEEEECCCCCCCHHHHHHHHHH T ss_conf 6899769987545999999999 Done!