HHSEARCH alignment of GI: 254780130 and SCOP domain: d1a1va2

Alignment

Probab=98.05  E-value=3.7e-07  Score=56.62  Aligned_cols=106  Identities=11%  Similarity=0.075  Sum_probs=73.5

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHH----------HHHHHHHHHCCCCCEEEECHH--HHHHHHH
Q ss_conf             899711057899999998765304----------778234----------899999972789869997214--4323322
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK----------DPCTIQEWNEGKIPLLFAHPA--SCGHGLN  124 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~----------r~~~i~~f~~~~~~Vll~~~~--a~g~Gln  124 (205)
                      .+.++|||++.+...+.|...|..          +...+.          ...+++.|..++.++++++..  .+..|++
T Consensus        35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD  114 (299)
T d1a1va2          35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS  114 (299)
T ss_dssp             HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCC
T ss_conf             69989998796899999999997779878997589407778731205777899999886599838999862010478788


Q ss_pred             HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf             4320675897268999888022555576665420265775399999838895899999
Q gi|254780130|r  125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ  182 (205)
Q Consensus       125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~  182 (205)
                      +. ...++|.++.|.|++.|.|++||.     -| |..-   +|+++.-+|-++.+++
T Consensus       115 id-~V~~VI~~d~P~SvesyIQRiGRT-----GR-Gr~G---~~~~l~~~t~p~~~l~  162 (299)
T d1a1va2         115 LD-PTFTIETTTLPQDAVSRTQRRGRT-----GR-GKPG---IYRFVAPGERPSGMFD  162 (299)
T ss_dssp             CS-SSCEEEEEEEECBHHHHHHHHTTB-----CS-SSCE---EEEESCSCCBCSCBCC
T ss_pred             CC-CCEEEEECCCCCCHHHHHHHCCCC-----CC-CCCC---EEEEEECCCCHHHHHH
T ss_conf             78-516999689998989987621443-----79-9981---6989714788788999

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]