HHSEARCH alignment of GI: 254780130 and SCOP domain: d1c4oa2

Alignment
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.04  E-value=6.6e-10  Score=71.81  Aligned_cols=99  Identities=15%  Similarity=0.070  Sum_probs=77.3

Q ss_pred             HHHHHHHH-CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf             49999861-489971105789999999876530----------4778234899999972789869997214432332243
Q gi|254780130|r   58 ALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ  126 (205)
Q Consensus        58 ~l~~ii~~-~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~  126 (205)
                      .+.++.+. ..|+++||||.-....+.|...|.          ++....+|..+++.|.+|+++||+++ .++++|+|..
T Consensus        20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT-~v~~~GiDip   98 (174)
T d1c4oa2          20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-NLLREGLDIP   98 (174)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-CCCCTTCCCT
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE-EEEEEECCCC
T ss_conf             999999998659838999823037999999998659725898615541889999999977986999963-5642113677


Q ss_pred             HHCCEEEEECCCC-----CHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             2067589726899-----988802255557666542026577
Q gi|254780130|r  127 YGGNILVFFSLWW-----DLEEHQQMIERIGVTRQRQAGFKR  163 (205)
Q Consensus       127 ~a~~~vI~~~~~~-----n~~~~~Qa~~Ri~~~r~hR~GQ~~  163 (205)
                      . .+++|+|++|-     |+..|.|..||.     -|-|.-.
T Consensus        99 ~-V~~Vi~~~~~~~~~~~~~~~~iq~~GR~-----gR~~~g~  134 (174)
T d1c4oa2          99 E-VSLVAILDADKEGFLRSERSLIQTIGRA-----ARNARGE  134 (174)
T ss_dssp             T-EEEEEETTTTSCSGGGSHHHHHHHHGGG-----TTSTTCE
T ss_pred             C-CCEEEEECCCCCCCCCHHHHHHHHHHHH-----HHCCCCE
T ss_conf             7-7389980365445530167799886144-----3047870


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]