HHSEARCH alignment of GI: 254780130 and SCOP domain: d1nkta4

Alignment
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=93.38  E-value=0.2  Score=24.96  Aligned_cols=138  Identities=15%  Similarity=0.185  Sum_probs=83.1

Q ss_pred             CCCCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECH
Q ss_conf             5420572343349999861--4899711057899999998765304778--------23489999997278986999721
Q gi|254780130|r   47 HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHP  116 (205)
Q Consensus        47 ~~~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~  116 (205)
                      .+......|++++.+-+.+  ..|+||+|.+...+.=+.|...|.....        ...++..+=..---.-.|.+++-
T Consensus        11 ~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~GaVTIATN   90 (219)
T d1nkta4          11 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN   90 (219)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET
T ss_pred             EEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             07747899999999999999966998899617599999999999872534322410468888899996466883796200


Q ss_pred             HHHHHHHHHHH---------------------------------------------------HCCEEEEECCCCCHHHHH
Q ss_conf             44323322432---------------------------------------------------067589726899988802
Q gi|254780130|r  117 ASCGHGLNLQY---------------------------------------------------GGNILVFFSLWWDLEEHQ  145 (205)
Q Consensus       117 ~a~g~GlnL~~---------------------------------------------------a~~~vI~~~~~~n~~~~~  145 (205)
                       .||-|.+..-                                                   +.=+||--+..-|     
T Consensus        91 -MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeS-----  164 (219)
T d1nkta4          91 -MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHES-----  164 (219)
T ss_dssp             -TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSS-----
T ss_pred             -CCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----
T ss_conf             -04787764646860155677765414673128789999998777888998887777777449967984255665-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2555576665420265775399999838895899999999999999999999
Q gi|254780130|r  146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA  197 (205)
Q Consensus       146 Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~  197 (205)
                      -++|++.|+|+-|=|..-....|  +   |.|..+++.-...+  ...+|..
T Consensus       165 rRIDnQLRGRsGRQGDPGsSrFf--l---SLeDdLmr~F~~~~--i~~lm~~  209 (219)
T d1nkta4         165 RRIDNQLRGRSGRQGDPGESRFY--L---SLGDELMRRFNGAA--LETLLTR  209 (219)
T ss_dssp             HHHHHHHHHTSSGGGCCEEEEEE--E---ETTSHHHHHTTHHH--HHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEE--E---ECCHHHHHHHCHHH--HHHHHHH
T ss_conf             55553302666456897512567--7---44679999878399--9999997


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Mycobacterium tuberculosis [TaxId: 1773]