HHSEARCH alignment of GI: 254780130 and SCOP domain: d1s2ma2

Alignment
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.74  E-value=5.4e-18  Score=116.57  Aligned_cols=125  Identities=18%  Similarity=0.241  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|.++++..++.++|||+++....+.+...|.          ++....+|..+...|.++..++++++ .+++.|
T Consensus        17 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~T-d~~~~G   95 (171)
T d1s2ma2          17 RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRG   95 (171)
T ss_dssp             GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH-HHHHHC
T ss_conf             9999999999984898765999722413567677650133443334333211456655321136863110120-176541


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS  188 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~  188 (205)
                      +|++. ++++|+|++|||+..|.|+.||.     +|.|++..  ++.|++++  |...++.+.++.
T Consensus        96 id~~~-v~~VI~~d~p~~~~~y~qr~GR~-----gR~g~~g~--~i~~v~~~--e~~~~~~i~~~l  151 (171)
T d1s2ma2          96 IDIQA-VNVVINFDFPKTAETYLHRIGRS-----GRFGHLGL--AINLINWN--DRFNLYKIEQEL  151 (171)
T ss_dssp             CCCTT-EEEEEESSCCSSHHHHHHHHCBS-----SCTTCCEE--EEEEECGG--GHHHHHHHHHHH
T ss_pred             CCCCE-EEEEEECCCCCHHHHHHHHHHHC-----CCCCCCCE--EEEEECHH--HHHHHHHHHHHH
T ss_conf             04662-48999648760277787775531-----41799617--99985789--999999999997


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]