HHSEARCH alignment of GI: 254780130 and SCOP domain: d1t5ia_

Alignment
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.76  E-value=3.4e-18  Score=117.67  Aligned_cols=128  Identities=14%  Similarity=0.198  Sum_probs=105.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+.|+++|.++++..++.++||||+++...+.|.+.|.          ++.+...|...++.|++|+.+||+++ .+++.
T Consensus        11 ~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T-~~~~~   89 (168)
T d1t5ia_          11 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGR   89 (168)
T ss_dssp             GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCST
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC-CCCCC
T ss_conf             59999999999983899819999803441101333430124443211122210222211221112221144123-30110


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             32243206758972689998880225555766654202657753999998388958999999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST  189 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~  189 (205)
                      |+|++. ++++|+|++|||+..|.|+.||.     +|.|++..|  +.|++. .-|..++..+.++..
T Consensus        90 Gid~~~-~~~vi~~~~p~~~~~yiqr~GR~-----gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~~  148 (168)
T d1t5ia_          90 GMDIER-VNIAFNYDMPEDSDTYLHRVARA-----GRFGTKGLA--ITFVSD-ENDAKILNDVQDRFE  148 (168)
T ss_dssp             TCCGGG-CSEEEESSCCSSHHHHHHHHHHH-----TGGGCCCEE--EEEECS-HHHHHHHHHHHHHHC
T ss_pred             HHHCCC-CHHHHHHHCCCCHHHHHHHHHHC-----CCCCCCCEE--EEEECC-HHHHHHHHHHHHHHC
T ss_conf             012044-13443221132214576542231-----528985189--999884-679999999999976


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]