HHSEARCH alignment of GI: 254780130 and SCOP domain: d1yksa2

Alignment
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=95.54  E-value=0.0094  Score=32.24  Aligned_cols=93  Identities=12%  Similarity=-0.012  Sum_probs=56.1

Q ss_pred             HHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf             998614899711057899999998765304778----2--3489999997278986999721443233224320675897
Q gi|254780130|r   61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF  134 (205)
Q Consensus        61 ~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~  134 (205)
                      +.+.+. +.+++||+.-..+.+.+.+.|.+...    .  .......+.+.+++.++++++ ..++.|+|+ . ..+||.
T Consensus        30 ~~i~~~-~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t-~~~~~~~~~-~-~~~vid  105 (299)
T d1yksa2          30 DWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILAT-DIAEMGANL-C-VERVLD  105 (299)
T ss_dssp             HHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEES-SSTTCCTTC-C-CSEEEE
T ss_pred             HHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEEE-CHHHHCEEC-C-CEEEEE
T ss_conf             999755-998999949999999999999866980999768675767766515776789970-036536412-7-338986


Q ss_pred             E---------CC----------CCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             2---------68----------9998880225555766654202657
Q gi|254780130|r  135 F---------SL----------WWDLEEHQQMIERIGVTRQRQAGFK  162 (205)
Q Consensus       135 ~---------~~----------~~n~~~~~Qa~~Ri~~~r~hR~GQ~  162 (205)
                      .         ++          +.+.+...|..||.     -|.+-.
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~-----gr~~~~  147 (299)
T d1yksa2         106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI-----GRNPNR  147 (299)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTS-----SCCTTC
T ss_pred             CCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCC-----CCCCCC
T ss_conf             685000035658788268732426899999864666-----666788


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]