HHSEARCH alignment of GI: 254780130 and SCOP domain: d2fwra1

Alignment
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.89  E-value=3.7e-24  Score=150.68  Aligned_cols=117  Identities=21%  Similarity=0.305  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf             72343349999861489971105789999999876530-----4778234899999972789869997214432332243
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ  126 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-----~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~  126 (205)
                      .+.|+++|.+++++.++.++|||+++...++.|.+.|.     +..+.++|+.+++.|++++.+||++ +.++|+|+||+
T Consensus        77 ~~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~-~~~~~~Gidl~  155 (200)
T d2fwra1          77 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVS-SQVLDEGIDVP  155 (200)
T ss_dssp             CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBC-SSCCCSSSCSC
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHCCCCCC
T ss_conf             48899999999996779807999475999999876338552557999999999998863487035430-21021025799


Q ss_pred             HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEEECCC
Q ss_conf             206758972689998880225555766654202657-7539999983889
Q gi|254780130|r  127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNT  175 (205)
Q Consensus       127 ~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~-~~v~v~~l~~~~t  175 (205)
                       .++++|+++++|||..+.|++||+     ||+||. +.+.+|+|+++||
T Consensus       156 -~~~~vi~~~~~~s~~~~~Q~iGR~-----~R~~~~k~~~~i~~~v~~~T  199 (200)
T d2fwra1         156 -DANVGVIMSGSGSAREYIQRLGRI-----LRPSKGKKEAVLYELISRGT  199 (200)
T ss_dssp             -CBSEEEEECCSSCCHHHHHHHHHS-----BCCCTTTCCEEEEEEEECSC
T ss_pred             -CCCEEEEECCCCCHHHHHHHHHHC-----CCCCCCCCEEEEEEEECCCC
T ss_conf             -888899967997999999998744-----87999986799999952999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]