Query gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 205 No_of_seqs 122 out of 3331 Neff 7.3 Searched_HMMs 13730 Date Sun May 22 06:21:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780130.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1z5za1 c.37.1.19 (A:663-906) 100.0 2.1E-42 0 251.7 13.1 191 2-199 16-222 (244) 2 d1z3ix1 c.37.1.19 (X:390-735) 100.0 6.7E-41 4.2E-45 243.3 12.2 189 2-196 27-252 (346) 3 d2fwra1 c.37.1.19 (A:257-456) 99.9 3.7E-24 2.7E-28 150.7 7.2 117 52-175 77-199 (200) 4 d1wp9a2 c.37.1.19 (A:201-486) 99.9 1.2E-21 9.1E-26 136.7 10.5 121 52-182 141-283 (286) 5 d1t5ia_ c.37.1.19 (A:) Spliceo 99.8 3.4E-18 2.5E-22 117.7 12.0 128 52-189 11-148 (168) 6 d1s2ma2 c.37.1.19 (A:252-422) 99.7 5.4E-18 3.9E-22 116.6 9.9 125 53-188 17-151 (171) 7 d1hv8a2 c.37.1.19 (A:211-365) 99.7 4.8E-17 3.5E-21 111.3 11.0 124 52-187 13-146 (155) 8 d1fuka_ c.37.1.19 (A:) Initiat 99.7 9.1E-17 6.7E-21 109.8 10.6 122 53-185 12-143 (162) 9 d2j0sa2 c.37.1.19 (A:244-411) 99.6 5.7E-16 4.2E-20 105.4 10.0 124 53-187 19-152 (168) 10 d2rb4a1 c.37.1.19 (A:307-474) 99.6 2.7E-15 1.9E-19 101.7 9.6 124 53-187 17-156 (168) 11 d1oywa3 c.37.1.19 (A:207-406) 99.5 1.6E-14 1.2E-18 97.3 9.4 112 53-173 15-136 (200) 12 d1gkub2 c.37.1.16 (B:251-498) 99.2 4.1E-12 3E-16 84.0 2.1 104 52-165 10-120 (248) 13 d1t5la2 c.37.1.19 (A:415-595) 99.1 5.4E-10 3.9E-14 72.3 11.7 102 54-162 15-133 (181) 14 d1c4oa2 c.37.1.19 (A:410-583) 99.0 6.6E-10 4.8E-14 71.8 9.2 99 58-163 20-134 (174) 15 d2p6ra4 c.37.1.19 (A:203-403) 98.9 2.2E-09 1.6E-13 69.0 6.6 77 91-174 103-186 (201) 16 d1jr6a_ c.37.1.14 (A:) HCV hel 98.3 3.4E-08 2.5E-12 62.3 -0.4 98 64-174 31-136 (138) 17 d1gm5a4 c.37.1.19 (A:550-755) 98.2 1.3E-07 9.3E-12 59.2 0.6 72 89-167 71-143 (206) 18 d1a1va2 c.37.1.14 (A:326-624) 98.1 3.7E-07 2.7E-11 56.6 0.8 106 67-182 35-162 (299) 19 d2eyqa5 c.37.1.19 (A:779-989) 97.2 0.00032 2.3E-08 40.4 5.3 92 67-165 30-134 (211) 20 d2bmfa2 c.37.1.14 (A:178-482) 97.1 0.00042 3.1E-08 39.7 5.4 91 67-165 177-293 (305) 21 d1tf5a4 c.37.1.19 (A:396-570) 96.9 0.0017 1.2E-07 36.4 7.4 111 52-168 16-143 (175) 22 d1yksa2 c.37.1.14 (A:325-623) 95.5 0.0094 6.9E-07 32.2 4.9 93 61-162 30-147 (299) 23 d1nkta4 c.37.1.19 (A:397-615) 93.4 0.2 1.4E-05 25.0 8.4 138 47-197 11-209 (219) 24 d2ifta1 c.66.1.46 (A:11-193) P 31.2 9.7 0.00071 15.6 1.6 22 131-152 117-138 (183) 25 d1jbea_ c.23.1.1 (A:) CheY pro 24.5 18 0.0013 14.0 6.4 49 106-160 77-127 (128) 26 d2fpoa1 c.66.1.46 (A:10-192) M 24.3 15 0.0011 14.5 1.6 22 131-152 113-134 (183) No 1 >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Probab=100.00 E-value=2.1e-42 Score=251.66 Aligned_cols=191 Identities=18% Similarity=0.225 Sum_probs=160.8 Q ss_pred HHHHHHHHHHHHHHCCCCEE--HHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEHHHH Q ss_conf 35899999999973578320--999999999998860770003445654205723433499998614--89971105789 Q gi|254780130|r 2 KQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF 77 (205) Q Consensus 2 k~Y~~l~~~~~~~~~~~~i~--a~~~~~~~~kL~Ql~~g~~~~d~~~~~~~~~~~Kl~~l~~ii~~~--~~~kviVf~~f 77 (205) +.|+++.++....++..... ..+.++.+++|+|+|+||...++.. .....++|++++.+++.+. +|+||||||+| T Consensus 16 ~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~-~~~~~S~K~~~l~~~l~~~~~~g~kviIFs~~ 94 (244) T d1z5za1 16 AMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQF 94 (244) T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC-CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESC T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 99999999999987611240027899999999876522875212333-10212068999999887641466625999601 Q ss_pred HHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHH Q ss_conf 99999987653-----------0477823489999997278-98699972144323322432067589726899988802 Q gi|254780130|r 78 NSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145 (205) Q Consensus 78 ~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~-~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~ 145 (205) ...++.|...+ .|+.+.+.|+.+++.|+++ +.+|+++++++||+|+|||. |+++||+|++|||..+. T Consensus 95 ~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~-a~~vi~~~~~wn~~~~~ 173 (244) T d1z5za1 95 VDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPAVED 173 (244) T ss_dssp HHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTT-CSEEEECSCCSCTTTC- T ss_pred EEHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHH T ss_conf 00677899998761351289996664200011045544301210010143112356621120-01432047124467776 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 255557666542026577539999983889589999999999999999999998 Q gi|254780130|r 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199 (205) Q Consensus 146 Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~~ 199 (205) ||++|+ ||+||+++|+||+|+++||+|+.|++++..|..+++.+++..+ T Consensus 174 Qa~~R~-----~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~~ 222 (244) T d1z5za1 174 QATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD 222 (244) T ss_dssp ------------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTT T ss_pred HHCCEE-----EECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 542501-----5649997259999861899999999999999999999871873 No 2 >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Probab=100.00 E-value=6.7e-41 Score=243.29 Aligned_cols=189 Identities=20% Similarity=0.322 Sum_probs=149.2 Q ss_pred HHHHHHHHHHHHHHC-CCCEEHHHHHHHHHHHHHHCCCCHHCC-----------CC----------CCCCCCCHHHHHHH Q ss_conf 358999999999735-783209999999999988607700034-----------45----------65420572343349 Q gi|254780130|r 2 KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-----------EE----------KHWKEVHDEKIKAL 59 (205) Q Consensus 2 k~Y~~l~~~~~~~~~-~~~i~a~~~~~~~~kL~Ql~~g~~~~d-----------~~----------~~~~~~~~~Kl~~l 59 (205) +.|+++.+....... .......+.+..+++|+|+||||.... .. .......++|+..| T Consensus 27 ~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L 106 (346) T d1z3ix1 27 ELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 106 (346) T ss_dssp HHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHH T ss_conf 99999999899998654487168999999999999579988611110221123200331233410000140017899999 Q ss_pred HHHHHH---CCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCC--CCEEEECHHHHHHHHH Q ss_conf 999861---48997110578999999987653----------04778234899999972789--8699972144323322 Q gi|254780130|r 60 EVIIEK---ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLN 124 (205) Q Consensus 60 ~~ii~~---~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~--~~Vll~~~~a~g~Gln 124 (205) .+++.. .+|+|||||++|...++.|...+ .++.+..+|..+++.|++++ ..|||++++|||+||| T Consensus 107 ~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~Gln 186 (346) T d1z3ix1 107 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 186 (346) T ss_dssp HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC T ss_pred HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCC T ss_conf 99999988751895168863014567999997630024110111002788999998651023433025403314443356 Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 432067589726899988802255557666542026577539999983889589999999999999999999 Q gi|254780130|r 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196 (205) Q Consensus 125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~ 196 (205) || +|+++|+||++|||..+.||++|+ ||+||+++|+||+|+++||||++|++++..|..+++.+++ T Consensus 187 L~-~a~~vi~~d~~wnp~~~~Qa~~R~-----~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~ 252 (346) T d1z3ix1 187 LI-GANRLVMFDPDWNPANDEQAMARV-----WRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD 252 (346) T ss_dssp CT-TEEEEEECSCCSSHHHHHHHHTTS-----SSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCS T ss_pred CC-CCEEEEEECCCCCCCHHHHHHHCC-----CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 56-430799945788615586763334-----0348998438999873898999999999999999998758 No 3 >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=99.89 E-value=3.7e-24 Score=150.68 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=103.9 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH Q ss_conf 72343349999861489971105789999999876530-----4778234899999972789869997214432332243 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-----~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~ 126 (205) .+.|+++|.+++++.++.++|||+++...++.|.+.|. +..+.++|+.+++.|++++.+||++ +.++|+|+||+ T Consensus 77 ~~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~-~~~~~~Gidl~ 155 (200) T d2fwra1 77 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVS-SQVLDEGIDVP 155 (200) T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBC-SSCCCSSSCSC T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHCCCCCC T ss_conf 48899999999996779807999475999999876338552557999999999998863487035430-21021025799 Q ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEEECCC Q ss_conf 206758972689998880225555766654202657-7539999983889 Q gi|254780130|r 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNT 175 (205) Q Consensus 127 ~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~-~~v~v~~l~~~~t 175 (205) .++++|+++++|||..+.|++||+ ||+||. +.+.+|+|+++|| T Consensus 156 -~~~~vi~~~~~~s~~~~~Q~iGR~-----~R~~~~k~~~~i~~~v~~~T 199 (200) T d2fwra1 156 -DANVGVIMSGSGSAREYIQRLGRI-----LRPSKGKKEAVLYELISRGT 199 (200) T ss_dssp -CBSEEEEECCSSCCHHHHHHHHHS-----BCCCTTTCCEEEEEEEECSC T ss_pred -CCCEEEEECCCCCHHHHHHHHHHC-----CCCCCCCCEEEEEEEECCCC T ss_conf -888899967997999999998744-----87999986799999952999 No 4 >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Probab=99.86 E-value=1.2e-21 Score=136.69 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=99.2 Q ss_pred CHHHHHHHHHHHH----HCCCCCEEEHHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHCCCC Q ss_conf 7234334999986----14899711057899999998765304------------------7782348999999727898 Q gi|254780130|r 52 HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTLDKDPCTIQEWNEGKI 109 (205) Q Consensus 52 ~~~Kl~~l~~ii~----~~~~~kviVf~~f~~~l~~l~~~~~~------------------~~~~~~r~~~i~~f~~~~~ 109 (205) .++|++.+.+++. ..++.++||||++....+.+...|.. +.+...|...++.|++|++ T Consensus 141 ~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~ 220 (286) T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF 220 (286) T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCC T ss_conf 88289999999999997189984899967188679999999976996488605664334201022889999999876998 Q ss_pred CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH Q ss_conf 6999721443233224320675897268999888022555576665420265775399999838895899999 Q gi|254780130|r 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182 (205) Q Consensus 110 ~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~ 182 (205) +||+++ .++|+|||++ .|++||+||+||||..+.|++|| .|+.+++.++.|+++||+||..|. T Consensus 221 ~vLv~T-~~~~~Gld~~-~~~~Vi~~d~~~~~~~~~Qr~GR--------~gR~~~~~~~~l~~~~~~ee~~~~ 283 (286) T d1wp9a2 221 NVLVAT-SVGEEGLDVP-EVDLVVFYEPVPSAIRSIQRRGR--------TGRHMPGRVIILMAKGTRDEAYYW 283 (286) T ss_dssp SEEEEC-GGGGGGGGST-TCCEEEESSCCHHHHHHHHHHTT--------SCSCCCSEEEEEEETTSHHHHHHH T ss_pred CEEEEC-CCEECCCCCC-CCCEEEEECCCCCHHHHHHHHHH--------CCCCCCCEEEEEEECCCHHHHHHH T ss_conf 299971-4402036688-89989995899898999999985--------787999889999838988999886 No 5 >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Probab=99.76 E-value=3.4e-18 Score=117.67 Aligned_cols=128 Identities=14% Similarity=0.198 Sum_probs=105.4 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) .+.|+++|.++++..++.++||||+++...+.|.+.|. ++.+...|...++.|++|+.+||+++ .+++. T Consensus 11 ~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T-~~~~~ 89 (168) T d1t5ia_ 11 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGR 89 (168) T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCST T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC-CCCCC T ss_conf 59999999999983899819999803441101333430124443211122210222211221112221144123-30110 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 32243206758972689998880225555766654202657753999998388958999999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~ 189 (205) |+|++. ++++|+|++|||+..|.|+.||. +|.|++..| +.|++. .-|..++..+.++.. T Consensus 90 Gid~~~-~~~vi~~~~p~~~~~yiqr~GR~-----gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~~ 148 (168) T d1t5ia_ 90 GMDIER-VNIAFNYDMPEDSDTYLHRVARA-----GRFGTKGLA--ITFVSD-ENDAKILNDVQDRFE 148 (168) T ss_dssp TCCGGG-CSEEEESSCCSSHHHHHHHHHHH-----TGGGCCCEE--EEEECS-HHHHHHHHHHHHHHC T ss_pred HHHCCC-CHHHHHHHCCCCHHHHHHHHHHC-----CCCCCCCEE--EEEECC-HHHHHHHHHHHHHHC T ss_conf 012044-13443221132214576542231-----528985189--999884-679999999999976 No 6 >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=99.74 E-value=5.4e-18 Score=116.57 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=104.2 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|++.|.++++..++.++|||+++....+.+...|. ++....+|..+...|.++..++++++ .+++.| T Consensus 17 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~T-d~~~~G 95 (171) T d1s2ma2 17 RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRG 95 (171) T ss_dssp GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSS T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH-HHHHHC T ss_conf 9999999999984898765999722413567677650133443334333211456655321136863110120-176541 Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 224320675897268999888022555576665420265775399999838895899999999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205) +|++. ++++|+|++|||+..|.|+.||. +|.|++.. ++.|++++ |...++.+.++. T Consensus 96 id~~~-v~~VI~~d~p~~~~~y~qr~GR~-----gR~g~~g~--~i~~v~~~--e~~~~~~i~~~l 151 (171) T d1s2ma2 96 IDIQA-VNVVINFDFPKTAETYLHRIGRS-----GRFGHLGL--AINLINWN--DRFNLYKIEQEL 151 (171) T ss_dssp CCCTT-EEEEEESSCCSSHHHHHHHHCBS-----SCTTCCEE--EEEEECGG--GHHHHHHHHHHH T ss_pred CCCCE-EEEEEECCCCCHHHHHHHHHHHC-----CCCCCCCE--EEEEECHH--HHHHHHHHHHHH T ss_conf 04662-48999648760277787775531-----41799617--99985789--999999999997 No 7 >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=99.71 E-value=4.8e-17 Score=111.32 Aligned_cols=124 Identities=18% Similarity=0.201 Sum_probs=100.0 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) ...|+++|.++++.. +.++|||++...+.+.|...|. ++....+|..++++|.+++.++++++ .+++. T Consensus 13 ~~~K~~~L~~ll~~~-~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T-~~~~~ 90 (155) T d1hv8a2 13 ENERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-DVMSR 90 (155) T ss_dssp GGGHHHHHHHHHCST-TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-TTHHH T ss_pred HHHHHHHHHHHHCCC-CCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEH-HHHHH T ss_conf 399999999997269-9989999794489988876523343222233331001134566655412111255303-67765 Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 322432067589726899988802255557666542026577539999983889589999999999 Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205) |+|++. ++++|+|++|||+..|.|+.||. .|.|++..+ +.++.+. |...++.+.++ T Consensus 91 Gid~~~-v~~Vi~~d~p~~~~~y~qr~GR~-----gR~g~~g~~--i~~~~~~--d~~~~~~i~~~ 146 (155) T d1hv8a2 91 GIDVND-LNCVINYHLPQNPESYMHRIGRT-----GRAGKKGKA--ISIINRR--EYKKLRYIERA 146 (155) T ss_dssp HCCCSC-CSEEEESSCCSCHHHHHHHSTTT-----CCSSSCCEE--EEEECTT--SHHHHHHHHHH T ss_pred HHHHCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCCEE--EEEECHH--HHHHHHHHHHH T ss_conf 432212-76799964999999999887763-----747997369--9998668--99999999999 No 8 >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=99.69 E-value=9.1e-17 Score=109.77 Aligned_cols=122 Identities=13% Similarity=0.209 Sum_probs=100.7 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) +.|++.|.++++..++.++||||+++...+.+.+.+. ++....+|..+.+.|++++.++|+++ .+++.| T Consensus 12 e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~T-dv~~rG 90 (162) T d1fuka_ 12 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLARG 90 (162) T ss_dssp GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-GGGTTT T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCC T ss_conf 7899999999984898858999988706999998886549559995167752367789998764036456515-623446 Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH Q ss_conf 224320675897268999888022555576665420265775399999838895899999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205) +|++. +++||+||+|||++.|.|+.||. .|.||+.. .+.+++.+ |......+. T Consensus 91 iDi~~-v~~VI~~d~P~~~~~yihR~GR~-----gR~g~~g~--~i~~~~~~--d~~~~~~i~ 143 (162) T d1fuka_ 91 IDVQQ-VSLVINYDLPANKENYIHRIGRG-----GRFGRKGV--AINFVTNE--DVGAMRELE 143 (162) T ss_dssp CCCCS-CSEEEESSCCSSGGGGGGSSCSC-----C-----CE--EEEEEETT--THHHHHHHH T ss_pred CCCCC-CEEEEEECCCHHHHHHHHHCCCC-----CCCCCCCE--EEEECCHH--HHHHHHHHH T ss_conf 55777-50899934514677887650144-----54798647--99981799--999999999 No 9 >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.64 E-value=5.7e-16 Score=105.37 Aligned_cols=124 Identities=13% Similarity=0.189 Sum_probs=101.7 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|+++|.++++..++.++|||++.....+.+...+. +..+.++|..+...|++++.++++++ .+++.| T Consensus 19 ~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~T-d~~~rG 97 (168) T d2j0sa2 19 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-DVWARG 97 (168) T ss_dssp THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-GGGSSS T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC-CHHCCC T ss_conf 9999999999984787763999605888788887766304431333112257899999999863884077414-410056 Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 22432067589726899988802255557666542026577539999983889589999999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205) +|+.. ++++|+||+|||+..|.|..||. .|.|++.. ++.+++.+ |...++.+.++ T Consensus 98 iDi~~-v~~VIn~d~P~~~~~yihR~GR~-----gR~g~~G~--~i~~~~~~--d~~~~~~i~~~ 152 (168) T d2j0sa2 98 LDVPQ-VSLIINYDLPNNRELYIHRIGRS-----GRYGRKGV--AINFVKND--DIRILRDIEQY 152 (168) T ss_dssp CCCTT-EEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEE--EEEEEEGG--GHHHHHHHHHH T ss_pred CCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCCCCCE--EEEEECHH--HHHHHHHHHHH T ss_conf 55357-65689933776787887661044-----52699747--99997789--99999999999 No 10 >d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.59 E-value=2.7e-15 Score=101.67 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=99.4 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|++.|.++++.....+++||+++....+.|...+. +......|..+++.|.+++.++++++ .+++.| T Consensus 17 ~~K~~~L~~ll~~~~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~ilv~T-d~~~~G 95 (168) T d2rb4a1 17 KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-NVCARG 95 (168) T ss_dssp HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-CSCCTT T ss_pred HHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEECH-HHHHHH T ss_conf 8999999999986798857997188899999999998647762102331156777877633137960034112-454321 Q ss_pred HHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 224320675897268999------88802255557666542026577539999983889589999999999 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205) +|++. .++||+||+||+ +..|.|+.||. .|.|++. .++.|++.+ |...+..+.++ T Consensus 96 id~~~-v~~Vi~yd~P~~~~~~~~~~~yihR~GR~-----gR~g~~g--~~i~~~~~~--d~~~l~~i~~~ 156 (168) T d2rb4a1 96 IDVKQ-VTIVVNFDLPVKQGEEPDYETYLHRIGRT-----GRFGKKG--LAFNMIEVD--ELPSLMKIQDH 156 (168) T ss_dssp TCCTT-EEEEEESSCCC--CCSCCHHHHHHHHCBC---------CCE--EEEEEECGG--GHHHHHHHHHH T ss_pred HCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHC-----CCCCCCE--EEEEEECHH--HHHHHHHHHHH T ss_conf 10466-42798525898644558999998886433-----6689944--899997689--99999999999 No 11 >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Probab=99.54 E-value=1.6e-14 Score=97.32 Aligned_cols=112 Identities=12% Similarity=0.179 Sum_probs=93.8 Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH Q ss_conf 234334999986148997110578999999987653----------0477823489999997278986999721443233 Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205) Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205) ..|++.|..++....+.++|||++.....+.|...+ .++...+.|..+.+.|++++.++++++ .++|.| T Consensus 15 ~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT-d~~~~G 93 (200) T d1oywa3 15 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VAFGMG 93 (200) T ss_dssp SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-TTSCTT T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CHHHHC T ss_conf 7689999999985699988999822311677644324478535775388717778999988741343078740-234531 Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC Q ss_conf 224320675897268999888022555576665420265775399999838 Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173 (205) Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~ 173 (205) +|+.. .++||+|++|+|+..|.|..||. -|.|+...+. .|++. T Consensus 94 iD~p~-v~~VI~~~~P~~~~~y~qr~GR~-----gR~g~~g~ai--~~~~~ 136 (200) T d1oywa3 94 INKPN-VRFVVHFDIPRNIESYYQETGRA-----GRDGLPAEAM--LFYDP 136 (200) T ss_dssp TCCTT-CCEEEESSCCSSHHHHHHHHTTS-----CTTSSCEEEE--EEECH T ss_pred CCCCC-CCEEEECCCCCCHHHHHHHHHHH-----HCCCCCCEEE--EECCH T ss_conf 68878-88999877751168898875453-----1377772587--75178 No 12 >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=99.15 E-value=4.1e-12 Score=84.04 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=83.5 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHCCCCCEEEECH---HHHHHHHH Q ss_conf 723433499998614899711057899999998765----30477823489999997278986999721---44323322 Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHP---ASCGHGLN 124 (205) Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----~~~~~~~~~r~~~i~~f~~~~~~Vll~~~---~a~g~Gln 124 (205) ++.|+..|.+++... |.+.|||++.+...+.|... +.++.+...|..+++.|.+|+++|++++. ..++.||+ T Consensus 10 ~~~~~~~l~~~l~~~-~~~~iif~~~~~~~~~l~~~l~~~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlD 88 (248) T d1gkub2 10 NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLD 88 (248) T ss_dssp SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSC T ss_pred CCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC T ss_conf 736899999999983-9798999898789999999998734378999999999999982798599996666024651367 Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 43206758972689998880225555766654202657753 Q gi|254780130|r 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205) Q Consensus 125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205) ++.+.+.||+|++|| +.|..+|. .|.|+.... T Consensus 89 ip~~v~~VI~~d~P~----~~~r~gR~-----~R~g~~~~~ 120 (248) T d1gkub2 89 LPERIRFAVFVGCPS----FRVTIEDI-----DSLSPQMVK 120 (248) T ss_dssp CTTTCCEEEEESCCE----EEEECSCG-----GGSCHHHHH T ss_pred CCCCCCEEEEECCCC----CHHHHHHH-----HCCCCCEEE T ss_conf 665401899967974----00005456-----316745176 No 13 >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Probab=99.12 E-value=5.4e-10 Score=72.31 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=77.8 Q ss_pred HHHHH-HHHHHHH-CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 34334-9999861-489971105789999999876530----------47782348999999727898699972144323 Q gi|254780130|r 54 EKIKA-LEVIIEK-ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 54 ~Kl~~-l~~ii~~-~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) .+++. |.++.+. ..+.++|||++.....+.+...|. ++....+|..+++.|.+|+++||+++ .+++. T Consensus 15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaT-dv~~r 93 (181) T d1t5la2 15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI-NLLRE 93 (181) T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEES-CCCSS T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHC T ss_conf 84999999999999629828999610346678888787679404674178638899999999978998889762-47771 Q ss_pred HHHHHHHCCEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 32243206758972689-----998880225555766654202657 Q gi|254780130|r 122 GLNLQYGGNILVFFSLW-----WDLEEHQQMIERIGVTRQRQAGFK 162 (205) Q Consensus 122 GlnL~~a~~~vI~~~~~-----~n~~~~~Qa~~Ri~~~r~hR~GQ~ 162 (205) ||+... .++||+||+| +|+..|.|+.|| +.|.|+. T Consensus 94 GiDip~-v~~VI~~d~p~~~~~~s~~~yi~R~GR-----agR~g~~ 133 (181) T d1t5la2 94 GLDIPE-VSLVAILDADKEGFLRSERSLIQTIGR-----AARNANG 133 (181) T ss_dssp SCCCTT-EEEEEETTTTSCSGGGSHHHHHHHHGG-----GTTSTTC T ss_pred CCCCCC-CCEEEEECCCCCCCCCCHHHHHHHHHH-----HCCCCCC T ss_conf 389999-788999569964554358999999876-----2456674 No 14 >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Probab=99.04 E-value=6.6e-10 Score=71.81 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=77.3 Q ss_pred HHHHHHHH-CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH Q ss_conf 49999861-489971105789999999876530----------4778234899999972789869997214432332243 Q gi|254780130|r 58 ALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126 (205) Q Consensus 58 ~l~~ii~~-~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~ 126 (205) .+.++.+. ..|+++||||.-....+.|...|. ++....+|..+++.|.+|+++||+++ .++++|+|.. T Consensus 20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT-~v~~~GiDip 98 (174) T d1c4oa2 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-NLLREGLDIP 98 (174) T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-CCCCTTCCCT T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE-EEEEEECCCC T ss_conf 999999998659838999823037999999998659725898615541889999999977986999963-5642113677 Q ss_pred HHCCEEEEECCCC-----CHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 2067589726899-----988802255557666542026577 Q gi|254780130|r 127 YGGNILVFFSLWW-----DLEEHQQMIERIGVTRQRQAGFKR 163 (205) Q Consensus 127 ~a~~~vI~~~~~~-----n~~~~~Qa~~Ri~~~r~hR~GQ~~ 163 (205) . .+++|+|++|- |+..|.|..||. -|-|.-. T Consensus 99 ~-V~~Vi~~~~~~~~~~~~~~~~iq~~GR~-----gR~~~g~ 134 (174) T d1c4oa2 99 E-VSLVAILDADKEGFLRSERSLIQTIGRA-----ARNARGE 134 (174) T ss_dssp T-EEEEEETTTTSCSGGGSHHHHHHHHGGG-----TTSTTCE T ss_pred C-CCEEEEECCCCCCCCCHHHHHHHHHHHH-----HHCCCCE T ss_conf 7-7389980365445530167799886144-----3047870 No 15 >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Probab=98.86 E-value=2.2e-09 Score=68.98 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=60.0 Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-------ECCCCCHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 77823489999997278986999721443233224320675897-------26899988802255557666542026577 Q gi|254780130|r 91 GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-------FSLWWDLEEHQQMIERIGVTRQRQAGFKR 163 (205) Q Consensus 91 ~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~ 163 (205) +.+...|..+.+.|+++.++|++++. +.+.|+|+. +.+++|. ++.++++..+.|..||. -|.|+.. T Consensus 103 ~l~~~~r~~ie~~f~~g~i~vlvaT~-~l~~Gin~p-~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRA-----GR~g~~~ 175 (201) T d2p6ra4 103 GLLNGQRRVVEDAFRRGNIKVVVATP-TLAAGVNLP-ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA-----GRPGMDE 175 (201) T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECS-TTTSSSCCC-BSEEEECCSEEESSSEEECCHHHHHHHHTTB-----SCTTTCS T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECH-HHHHHCCCC-CCEEEEECCEECCCCCCCCCHHHHHHHHCCC-----CCCCCCC T ss_conf 76256689999998679814997041-887523799-7469995142046874779999999875446-----8999997 Q ss_pred CEEEEEEEECC Q ss_conf 53999998388 Q gi|254780130|r 164 AVFVYYLIAQN 174 (205) Q Consensus 164 ~v~v~~l~~~~ 174 (205) .-.++.+..+. T Consensus 176 ~G~~~l~~~~~ 186 (201) T d2p6ra4 176 RGEAIIIVGKR 186 (201) T ss_dssp CEEEEEECCGG T ss_pred EEEEEEEECCC T ss_conf 25999996898 No 16 >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Probab=98.29 E-value=3.4e-08 Score=62.34 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=68.0 Q ss_pred HHCCCCCEEEHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE----E Q ss_conf 614899711057899999998765304778----23489999997278986999721443233224320675897----2 Q gi|254780130|r 64 EKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF----F 135 (205) Q Consensus 64 ~~~~~~kviVf~~f~~~l~~l~~~~~~~~~----~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~----~ 135 (205) +...+.++||||+-+...+.|...|..... .. +....+.|++++.+|++++ .+++.|+|. . -..||+ | T Consensus 31 ~~~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H-~~~~~~~~~~~~~~vlvaT-d~~~~GiD~-~-v~~Vi~~~~~~ 106 (138) T d1jr6a_ 31 EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYY-RGLDVSVIPTNGDVVVVAT-DALMTGFTG-D-FDSVIDCNTSD 106 (138) T ss_dssp HHHTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEEC-TTCCSCCCTTSSCEEEEES-SSSCSSSCC-C-BSEEEECSEET T ss_pred HHCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHH-CCCHHHHHHHHHCCEEEHH-HHHHHCCCC-C-CCEEEEEEECC T ss_conf 410899899990958999999999835263203342-3530544323311214106-888702543-3-46177777647 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC Q ss_conf 689998880225555766654202657753999998388 Q gi|254780130|r 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205) Q Consensus 136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205) ++|++++.|.|.+||- -| |+.- +|.+++.+ T Consensus 107 ~~P~~~~~y~qr~GR~-----gR-g~~G---~~~~i~~~ 136 (138) T d1jr6a_ 107 GKPQDAVSRTQRRGRT-----GR-GKPG---IYRFVAPG 136 (138) T ss_dssp TEECCHHHHHHHHTTB-----CS-SSCE---EEEECCSS T ss_pred CCCCCHHHHHHHHCCC-----CC-CCCC---EEEEECCC T ss_conf 7999999998686230-----48-9982---89997379 No 17 >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Probab=98.18 E-value=1.3e-07 Score=59.18 Aligned_cols=72 Identities=15% Similarity=0.291 Sum_probs=56.9 Q ss_pred HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCE-EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 0477823489999997278986999721443233224320675-897268999888022555576665420265775399 Q gi|254780130|r 89 PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI-LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167 (205) Q Consensus 89 ~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~-vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205) .+..+.++++.++..|.+++++||++| ....+|||... +++ +|+..+.|..+.+.|-.||+ -|-|++.-|+. T Consensus 71 HG~m~~~eke~~m~~F~~g~~~iLVaT-tViE~GIDip~-a~~iii~~a~~fglsqlhQlrGRv-----GR~~~~~~~~l 143 (206) T d1gm5a4 71 HGRLSQEEKDRVMLEFAEGRYDILVST-TVIEVGIDVPR-ANVMVIENPERFGLAQLHQLRGRV-----GRGGQEAYCFL 143 (206) T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCS-SCCCSCSCCTT-CCEEEBCSCSSSCTTHHHHHHHTS-----CCSSTTCEEEC T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEEE-HHHHCCCCCCC-CCEEEEECCCCCCHHHHHHHHHHE-----EECCCCCEEEE T ss_conf 603659999999999977987899970-24310455267-848999804886377887652021-----21212540576 No 18 >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Probab=98.05 E-value=3.7e-07 Score=56.62 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=73.5 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHH----------HHHHHHHHHCCCCCEEEECHH--HHHHHHH Q ss_conf 899711057899999998765304----------778234----------899999972789869997214--4323322 Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK----------DPCTIQEWNEGKIPLLFAHPA--SCGHGLN 124 (205) Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~----------r~~~i~~f~~~~~~Vll~~~~--a~g~Gln 124 (205) .+.++|||++.+...+.|...|.. +...+. ...+++.|..++.++++++.. .+..|++ T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299) T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299) T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCC T ss_conf 69989998796899999999997779878997589407778731205777899999886599838999862010478788 Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH Q ss_conf 4320675897268999888022555576665420265775399999838895899999 Q gi|254780130|r 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182 (205) Q Consensus 125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~ 182 (205) +. ...++|.++.|.|++.|.|++||. -| |..- +|+++.-+|-++.+++ T Consensus 115 id-~V~~VI~~d~P~SvesyIQRiGRT-----GR-Gr~G---~~~~l~~~t~p~~~l~ 162 (299) T d1a1va2 115 LD-PTFTIETTTLPQDAVSRTQRRGRT-----GR-GKPG---IYRFVAPGERPSGMFD 162 (299) T ss_dssp CS-SSCEEEEEEEECBHHHHHHHHTTB-----CS-SSCE---EEEESCSCCBCSCBCC T ss_pred CC-CCEEEEECCCCCCHHHHHHHCCCC-----CC-CCCC---EEEEEECCCCHHHHHH T ss_conf 78-516999689998989987621443-----79-9981---6989714788788999 No 19 >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Probab=97.15 E-value=0.00032 Score=40.40 Aligned_cols=92 Identities=12% Similarity=0.264 Sum_probs=62.6 Q ss_pred CCCCEEEHHHHHHHH----HHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE Q ss_conf 899711057899999----998765304--------77823489999997278986999721443233224320675897 Q gi|254780130|r 67 NAAPIIVAYHFNSDL----ARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205) Q Consensus 67 ~~~kviVf~~f~~~l----~~l~~~~~~--------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205) .|..|.+.|+-.++. +.+.+.|++ -...++.+.++.+|.+++++||++|+ ...+|++... |+++|. T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-vIEvGiDvpn-A~~iiI 107 (211) T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGIDIPT-ANTIII 107 (211) T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-TTGGGSCCTT-EEEEEE T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEH-HHHHCCCCCC-CCEEEE T ss_conf 69959999717521266888888747733799997226888899999999829862688755-3440468998-769987 Q ss_pred ECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 268-9998880225555766654202657753 Q gi|254780130|r 135 FSL-WWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205) Q Consensus 135 ~~~-~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205) .+. .|-.+..-|-.||+. |-+...-| T Consensus 108 ~~a~rfGLaQLhQLRGRVG-----R~~~~s~c 134 (211) T d2eyqa5 108 ERADHFGLAQLHQLRGRVG-----RSHHQAYA 134 (211) T ss_dssp TTTTSSCHHHHHHHHTTCC-----BTTBCEEE T ss_pred ECCHHCCCCCCCCCCCEEE-----ECCCCCEE T ss_conf 1300033112223023355-----36766548 No 20 >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Probab=97.09 E-value=0.00042 Score=39.71 Aligned_cols=91 Identities=4% Similarity=-0.071 Sum_probs=62.3 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCC----CC--HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE------- Q ss_conf 8997110578999999987653047----78--2348999999727898699972144323322432067589------- Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQG----RT--LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV------- 133 (205) Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~----~~--~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI------- 133 (205) .+.+++||++...+.+.+...+... .. .+..+.....|.++..++++++ .+.+.|+|+. + ..+| T Consensus 177 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lvaT-~~~~~G~~~~-~-~~Vi~~~~~~~ 253 (305) T d2bmfa2 177 FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTT-DISEMGANFK-A-ERVIDPRRCMK 253 (305) T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGGGGGTSCCSEEEEC-GGGGTTCCCC-C-SEEEECCEEEE T ss_pred HCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHH-HHHHHCCCCC-C-CEEEECCCCEE T ss_conf 0799899963099999999999867998999578384777754310001135556-7887257888-4-08997587414 Q ss_pred ---EEC----------CCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf ---726----------89998880225555766654202657753 Q gi|254780130|r 134 ---FFS----------LWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205) Q Consensus 134 ---~~~----------~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205) +++ .|-|++.+.|..||. -|.|+.... T Consensus 254 ~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~-----GR~~~~~~~ 293 (305) T d2bmfa2 254 PVILTDGEERVILAGPMPVTHSSAAQRRGRV-----GRNPKNEND 293 (305) T ss_dssp EEEECSSSCEEEEEEEEECCHHHHHHHHTTS-----SCSSSCCCE T ss_pred EEEECCCCCCEEEECCCCCCHHHHHHHHCCC-----CCCCCCCEE T ss_conf 6573389876388044569988983241186-----828999269 No 21 >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Probab=96.94 E-value=0.0017 Score=36.40 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=72.4 Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHH Q ss_conf 72343349999861--4899711057899999998765304778--------2348999999727898699972144323 Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205) Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205) ...|++++.+-+.+ ..|+||+|++...+.-+.|...|..... ...++..+-...-....|.+++ ..||- T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~~g~VtIAT-NmAGR 94 (175) T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT-NMAGR 94 (175) T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE-TTSST T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEHH-HHHHC T ss_conf 99999999999999996599889996819999999999997599712210226899888887513798166445-58870 Q ss_pred HHH-------HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 322-------43206758972689998880225555766654202657753999 Q gi|254780130|r 122 GLN-------LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205) Q Consensus 122 Gln-------L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205) |.+ .+.+.=+||.-.++-|.-...|..||. -|-|..-....| T Consensus 95 GtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~-----gRQGdpGs~~~~ 143 (175) T d1tf5a4 95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRS-----GRQGDPGITQFY 143 (175) T ss_dssp TCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEEEEEE T ss_pred CCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCH-----HHHCCCCCCEEE T ss_conf 8875663889857985899840485266788884234-----420787451899 No 22 >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Probab=95.54 E-value=0.0094 Score=32.24 Aligned_cols=93 Identities=12% Similarity=-0.012 Sum_probs=56.1 Q ss_pred HHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE Q ss_conf 998614899711057899999998765304778----2--3489999997278986999721443233224320675897 Q gi|254780130|r 61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205) Q Consensus 61 ~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205) +.+.+. +.+++||+.-..+.+.+.+.|.+... . .......+.+.+++.++++++ ..++.|+|+ . ..+||. T Consensus 30 ~~i~~~-~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t-~~~~~~~~~-~-~~~vid 105 (299) T d1yksa2 30 DWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILAT-DIAEMGANL-C-VERVLD 105 (299) T ss_dssp HHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEES-SSTTCCTTC-C-CSEEEE T ss_pred HHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEEE-CHHHHCEEC-C-CEEEEE T ss_conf 999755-998999949999999999999866980999768675767766515776789970-036536412-7-338986 Q ss_pred E---------CC----------CCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 2---------68----------9998880225555766654202657 Q gi|254780130|r 135 F---------SL----------WWDLEEHQQMIERIGVTRQRQAGFK 162 (205) Q Consensus 135 ~---------~~----------~~n~~~~~Qa~~Ri~~~r~hR~GQ~ 162 (205) . ++ +.+.+...|..||. -|.+-. T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~-----gr~~~~ 147 (299) T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI-----GRNPNR 147 (299) T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTS-----SCCTTC T ss_pred CCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCC-----CCCCCC T ss_conf 685000035658788268732426899999864666-----666788 No 23 >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Probab=93.38 E-value=0.2 Score=24.96 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=83.1 Q ss_pred CCCCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECH Q ss_conf 5420572343349999861--4899711057899999998765304778--------23489999997278986999721 Q gi|254780130|r 47 HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHP 116 (205) Q Consensus 47 ~~~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~ 116 (205) .+......|++++.+-+.+ ..|+||+|.+...+.=+.|...|..... ...++..+=..---.-.|.+++- T Consensus 11 ~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~GaVTIATN 90 (219) T d1nkta4 11 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN 90 (219) T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 07747899999999999999966998899617599999999999872534322410468888899996466883796200 Q ss_pred HHHHHHHHHHH---------------------------------------------------HCCEEEEECCCCCHHHHH Q ss_conf 44323322432---------------------------------------------------067589726899988802 Q gi|254780130|r 117 ASCGHGLNLQY---------------------------------------------------GGNILVFFSLWWDLEEHQ 145 (205) Q Consensus 117 ~a~g~GlnL~~---------------------------------------------------a~~~vI~~~~~~n~~~~~ 145 (205) .||-|.+..- +.=+||--+..-| T Consensus 91 -MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeS----- 164 (219) T d1nkta4 91 -MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHES----- 164 (219) T ss_dssp -TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSS----- T ss_pred -CCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC----- T ss_conf -04787764646860155677765414673128789999998777888998887777777449967984255665----- Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2555576665420265775399999838895899999999999999999999 Q gi|254780130|r 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205) Q Consensus 146 Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205) -++|++.|+|+-|=|..-....| + |.|..+++.-...+ ...+|.. T Consensus 165 rRIDnQLRGRsGRQGDPGsSrFf--l---SLeDdLmr~F~~~~--i~~lm~~ 209 (219) T d1nkta4 165 RRIDNQLRGRSGRQGDPGESRFY--L---SLGDELMRRFNGAA--LETLLTR 209 (219) T ss_dssp HHHHHHHHHTSSGGGCCEEEEEE--E---ETTSHHHHHTTHHH--HHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCEEE--E---ECCHHHHHHHCHHH--HHHHHHH T ss_conf 55553302666456897512567--7---44679999878399--9999997 No 24 >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} Probab=31.24 E-value=9.7 Score=15.57 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.1 Q ss_pred EEEEECCCCCHHHHHHHHHHHH Q ss_conf 5897268999888022555576 Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIG 152 (205) Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~ 152 (205) -+||+||||+...+.+....+. T Consensus 117 DlIFlDPPY~~~~~~~~l~~l~ 138 (183) T d2ifta1 117 DVVFLDPPFHFNLAEQAISLLC 138 (183) T ss_dssp EEEEECCCSSSCHHHHHHHHHH T ss_pred CEEEECHHHHHHHHHHHHHHHH T ss_conf 3788640675335999999888 No 25 >d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]} Probab=24.54 E-value=18 Score=14.04 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=31.1 Q ss_pred CCCCCEEEECHHHHHHHHH--HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 7898699972144323322--432067589726899988802255557666542026 Q gi|254780130|r 106 EGKIPLLFAHPASCGHGLN--LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160 (205) Q Consensus 106 ~~~~~Vll~~~~a~g~Gln--L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G 160 (205) ..+.+|+++|......-.. ++.+++ -|+.-|+++....+++.++. .|.| T Consensus 77 ~~~~piI~lt~~~~~~~~~~a~~~G~~--~~l~KP~~~~~L~~~l~~~l----~r~~ 127 (128) T d1jbea_ 77 MSALPVLMVTAEAKKENIIAAAQAGAS--GYVVKPFTAATLEEKLNKIF----EKLG 127 (128) T ss_dssp CTTCCEEEEESSCCHHHHHHHHHTTCS--EEEESSCCHHHHHHHHHHHH----HHHT T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCC--EEEECCCCHHHHHHHHHHHH----HHCC T ss_conf 789968999776999999999987998--89989899999999999999----8749 No 26 >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} Probab=24.29 E-value=15 Score=14.50 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.4 Q ss_pred EEEEECCCCCHHHHHHHHHHHH Q ss_conf 5897268999888022555576 Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIG 152 (205) Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~ 152 (205) -+||+||||....+.+....+. T Consensus 113 DlIf~DPPY~~~~~~~~l~~l~ 134 (183) T d2fpoa1 113 NIVFVDPPFRRGLLEETINLLE 134 (183) T ss_dssp EEEEECCSSSTTTHHHHHHHHH T ss_pred CEEEECCCCCCCHHHHHHHHHH T ss_conf 7899827443563999999999 Done!