RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780130|ref|YP_003064543.1| hypothetical protein
CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)



>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 200

 Score = 48.0 bits (113), Expect = 7e-07
 Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 15/185 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSAS------KTVKCLQLANGAVYYDEEKHWKEVHDE 54
             +Y K ++     L+   I    +         +    +       ++E +        
Sbjct: 20  RVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKN 79

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----AFPQGRTLDKDPCTIQEWNEGKIP 110
           KI+ L  I+E+     II+    N  + R+ K         RT  ++   I E       
Sbjct: 80  KIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRF 139

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                      G+++    N+ V  S      E+ Q + RI     R +  K+   +Y L
Sbjct: 140 RAIVSSQVLDEGIDVP-DANVGVIMSGSGSAREYIQRLGRIL----RPSKGKKEAVLYEL 194

Query: 171 IAQNT 175
           I++ T
Sbjct: 195 ISRGT 199


>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 244

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D    +  N   +  +     + G G+NL     + + F  WW+     Q  +R+    
Sbjct: 125 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV-IHFDRWWNPAVEDQATDRVYRIG 183

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q      R V V+ LI+  T++E + Q L  K ++   ++++
Sbjct: 184 Q-----TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 220


>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 346

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL     + V F   W+    +Q + R+   R  Q   K+  ++Y L+
Sbjct: 174 FMLSSKAGGCGLNLIGANRL-VMFDPDWNPANDEQAMARVW--RDGQ---KKTCYIYRLL 227

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  TI+E +LQR   K  +   +++ 
Sbjct: 228 STGTIEEKILQRQAHKKALSSCVVDE 253


>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
           PF2015 {Pyrococcus furiosus [TaxId: 2261]}
          Length = 286

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+  G+  +L A       GL++    +++VF+          Q   R G  R    
Sbjct: 211 ILDEFARGEFNVLVATSV-GEEGLDVP-EVDLVVFYEPVPSAIRSIQRRGRTG--RHMP- 265

Query: 160 GFKRAVFVYYLIAQNTIDE 178
                  V  L+A+ T DE
Sbjct: 266 -----GRVIILMAKGTRDE 279


>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 522

 Score = 25.4 bits (55), Expect = 3.2
 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWW-DLEEHQQMIERIGV 153
            F   +     +      NI+  F  +  +    ++M+  +GV
Sbjct: 206 YFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGV 248


>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
          562]}
          Length = 174

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 20/89 (22%)

Query: 2  KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA--L 59
           +  +  RE+    +G+ I     A KT               EK+ +   ++KI A   
Sbjct: 19 AKAEQLAREMAGQAKGKKIRNVEEALKTY--------------EKY-RADINKKINAKDR 63

Query: 60 EVIIEKANAAPIIVAYHFNSDLARLQKAF 88
            I   A A   +     +S+L R  +  
Sbjct: 64 AAI---AAALESVKLSDISSNLNRFSRGL 89


>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 120

 Score = 24.9 bits (54), Expect = 4.8
 Identities = 9/57 (15%), Positives = 23/57 (40%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
            +  +     KE+   + + +  I++K N         +  DL+  Q  + +G  ++
Sbjct: 44  PISPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIE 100


>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine
          amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId:
          44689]}
          Length = 150

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 51 VHDEKIKALEVIIEKANAAPIIVAYH 76
          V +  IK +   IE      ++ A  
Sbjct: 24 VENGIIKEISKNIEPKEGIKVVDATD 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 806,068
Number of extensions: 37636
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 16
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)