RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Score = 48.0 bits (113), Expect = 7e-07 Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 15/185 (8%) Query: 1 MKQYHKFQRELYCDLQGENIEAFNSAS------KTVKCLQLANGAVYYDEEKHWKEVHDE 54 +Y K ++ L+ I + + + ++E + Sbjct: 20 RVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKN 79 Query: 55 KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----AFPQGRTLDKDPCTIQEWNEGKIP 110 KI+ L I+E+ II+ N + R+ K RT ++ I E Sbjct: 80 KIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRF 139 Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170 G+++ N+ V S E+ Q + RI R + K+ +Y L Sbjct: 140 RAIVSSQVLDEGIDVP-DANVGVIMSGSGSAREYIQRLGRIL----RPSKGKKEAVLYEL 194 Query: 171 IAQNT 175 I++ T Sbjct: 195 ISRGT 199 >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Score = 46.2 bits (108), Expect = 2e-06 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 96 KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155 +D + N + + + G G+NL + + F WW+ Q +R+ Sbjct: 125 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV-IHFDRWWNPAVEDQATDRVYRIG 183 Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 Q R V V+ LI+ T++E + Q L K ++ ++++ Sbjct: 184 Q-----TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 220 >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Score = 44.6 bits (104), Expect = 7e-06 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171 + G GLNL + V F W+ +Q + R+ R Q K+ ++Y L+ Sbjct: 174 FMLSSKAGGCGLNLIGANRL-VMFDPDWNPANDEQAMARVW--RDGQ---KKTCYIYRLL 227 Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197 + TI+E +LQR K + +++ Sbjct: 228 STGTIEEKILQRQAHKKALSSCVVDE 253 >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Score = 39.5 bits (91), Expect = 2e-04 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%) Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159 + E+ G+ +L A GL++ +++VF+ Q R G R Sbjct: 211 ILDEFARGEFNVLVATSV-GEEGLDVP-EVDLVVFYEPVPSAIRSIQRRGRTG--RHMP- 265 Query: 160 GFKRAVFVYYLIAQNTIDE 178 V L+A+ T DE Sbjct: 266 -----GRVIILMAKGTRDE 279 >d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Azotobacter vinelandii [TaxId: 354]} Length = 522 Score = 25.4 bits (55), Expect = 3.2 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWW-DLEEHQQMIERIGV 153 F + + NI+ F + + ++M+ +GV Sbjct: 206 YFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGV 248 >d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]} Length = 174 Score = 25.1 bits (55), Expect = 4.3 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 20/89 (22%) Query: 2 KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA--L 59 + + RE+ +G+ I A KT EK+ + ++KI A Sbjct: 19 AKAEQLAREMAGQAKGKKIRNVEEALKTY--------------EKY-RADINKKINAKDR 63 Query: 60 EVIIEKANAAPIIVAYHFNSDLARLQKAF 88 I A A + +S+L R + Sbjct: 64 AAI---AAALESVKLSDISSNLNRFSRGL 89 >d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]} Length = 120 Score = 24.9 bits (54), Expect = 4.8 Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 39 AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95 + + KE+ + + + I++K N + DL+ Q + +G ++ Sbjct: 44 PISPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIE 100 >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 Score = 24.2 bits (52), Expect = 8.5 Identities = 6/26 (23%), Positives = 10/26 (38%) Query: 51 VHDEKIKALEVIIEKANAAPIIVAYH 76 V + IK + IE ++ A Sbjct: 24 VENGIIKEISKNIEPKEGIKVVDATD 49 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.137 0.414 Gapped Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 806,068 Number of extensions: 37636 Number of successful extensions: 109 Number of sequences better than 10.0: 1 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 16 Length of query: 205 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 124 Effective length of database: 1,295,466 Effective search space: 160637784 Effective search space used: 160637784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.9 bits)