BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62] (205 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 430 bits (1105), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/205 (100%), Positives = 205/205 (100%) Query: 1 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE Sbjct: 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313 Query: 61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG Sbjct: 314 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 373 Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV Sbjct: 374 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433 Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205 LQRLRTKSTIQDLLLNALKKETIHV Sbjct: 434 LQRLRTKSTIQDLLLNALKKETIHV 458 >gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Score = 428 bits (1100), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/205 (100%), Positives = 205/205 (100%) Query: 1 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE Sbjct: 1 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60 Query: 61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG Sbjct: 61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV Sbjct: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180 Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205 LQRLRTKSTIQDLLLNALKKETIHV Sbjct: 181 LQRLRTKSTIQDLLLNALKKETIHV 205 >gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 133 Score = 23.9 bits (50), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201 E + ++E I RQ G VFVYYL+ + ++++ ++ LL +E Sbjct: 54 ESMEGVLEFIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAG---ARAGANSFLLKPFNRE 108 Query: 202 TI 203 T+ Sbjct: 109 TL 110 >gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 1576 Score = 22.7 bits (47), Expect = 4.3, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 30 VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79 VK + + + + WKEV D+ L V E A I VA H S Sbjct: 1522 VKAITTGSSVATIMQNEKWKEVKDQVFDILSVEKE-VTVAHITVATHLLS 1570 >gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 674 Score = 22.7 bits (47), Expect = 4.6, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 67 NAAPIIVAYHFNSDLARLQKA 87 NA I + F+S +ARL+KA Sbjct: 110 NAKAIFEDFDFSSTIARLEKA 130 >gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 753 Score = 22.3 bits (46), Expect = 6.7, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 80 DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115 +++R KA Q ++K+P T+ N G I L +H Sbjct: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,019 Number of Sequences: 1233 Number of extensions: 5073 Number of successful extensions: 17 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 6 length of query: 205 length of database: 328,796 effective HSP length: 70 effective length of query: 135 effective length of database: 242,486 effective search space: 32735610 effective search space used: 32735610 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 36 (18.5 bits)