Query gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 121 out of 1551
Neff 3.6
Searched_HMMs 13730
Date Sun May 22 18:04:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780131.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dgsa3 d.142.2.2 (A:1-314) Ad 99.7 3.7E-18 2.7E-22 129.5 5.2 66 54-119 1-66 (314)
2 d1ta8a_ d.142.2.2 (A:) Adenyla 99.7 4.1E-17 3E-21 123.1 9.1 66 54-119 2-67 (313)
3 d1b04a_ d.142.2.2 (A:) Adenyla 99.7 1.8E-16 1.3E-20 119.2 8.5 65 55-119 1-65 (312)
4 d1px5a1 a.160.1.2 (A:201-346) 25.2 6.7 0.00049 18.0 -0.1 58 51-118 46-109 (146)
5 d1ojha_ a.214.1.1 (A:) Phycobi 21.2 26 0.0019 14.4 2.9 42 28-77 3-44 (52)
6 d1gq2a2 c.58.1.3 (A:23-279) Mi 20.4 27 0.0019 14.3 2.5 33 73-105 192-225 (257)
7 d1o0sa2 c.58.1.3 (A:2-295) Mit 19.1 28 0.0021 14.2 2.4 34 73-106 229-264 (294)
8 d1m4la_ c.56.5.1 (A:) Carboxyp 15.8 26 0.0019 14.4 1.2 28 90-117 15-42 (307)
9 d1ayea1 c.56.5.1 (A:1-309) Car 14.6 29 0.0021 14.1 1.2 28 90-117 14-41 (307)
10 d1jqga1 c.56.5.1 (A:1-310) Car 13.7 39 0.0028 13.3 2.3 20 90-109 15-34 (317)
No 1
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=99.71 E-value=3.7e-18 Score=129.54 Aligned_cols=66 Identities=35% Similarity=0.565 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 899999999999999999999975445898569899999999999999978742689897353889
Q gi|254780131|r 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119 (119)
Q Consensus 54 Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISD~EYD~L~~eL~~LE~~~PeL~~~dSPT~~VGy 119 (119)
||+.+++.+++.|+++|.+||++||+.++|+|||++||+|+++|.+||.+||+|+.++|||++||+
T Consensus 1 m~~~~~~~~i~~L~~~i~~~~~~YY~~~~p~IsD~~YD~L~~eL~~le~~~p~l~~~~s~~~~vg~ 66 (314)
T d1dgsa3 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGA 66 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHHHHTTSSGGGCCTTSGGGGCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 988999999999999999999997648999789999999999999999869000267896400112
No 2
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]}
Probab=99.69 E-value=4.1e-17 Score=123.15 Aligned_cols=66 Identities=30% Similarity=0.431 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 899999999999999999999975445898569899999999999999978742689897353889
Q gi|254780131|r 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119 (119)
Q Consensus 54 Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISD~EYD~L~~eL~~LE~~~PeL~~~dSPT~~VGy 119 (119)
|+-.+|..++++|+++|.+||++||+.++|+|||++||+|+++|.+||.+||+++.++|||++||.
T Consensus 2 ~~~~~~~~~~~~L~~~i~~~~~~Yy~~~~p~iSD~eYD~L~~~L~~le~~~p~~~~~~s~~~~vg~ 67 (313)
T d1ta8a_ 2 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGG 67 (313)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTCGGGGGCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 887899999999999999999998618999798899999999999999868022477885300245
No 3
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.65 E-value=1.8e-16 Score=119.16 Aligned_cols=65 Identities=32% Similarity=0.451 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999999975445898569899999999999999978742689897353889
Q gi|254780131|r 55 SKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119 (119)
Q Consensus 55 sk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISD~EYD~L~~eL~~LE~~~PeL~~~dSPT~~VGy 119 (119)
.+.+|+.|+++|+++|.+||++||+.++|+|||++||+|+.+|..||.+||+|+..+||+++||.
T Consensus 1 ~~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~l~~~~s~~~~v~~ 65 (312)
T d1b04a_ 1 DRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGG 65 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHHHHHHHCGGGCCTTCGGGGTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 95899999999999999999998628999799999999999999999868222468997512233
No 4
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=25.18 E-value=6.7 Score=18.00 Aligned_cols=58 Identities=29% Similarity=0.505 Sum_probs=41.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHH------HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 7778999999999999999999999------7544589856989999999999999997874268989735388
Q gi|254780131|r 51 VTSLSKGEAMIEVEYLVKIALHHQK------WYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118 (119)
Q Consensus 51 v~~Lsk~EA~~eie~L~k~I~~Hn~------~YY~~D~P~ISD~EYD~L~~eL~~LE~~~PeL~~~dSPT~~VG 118 (119)
-+..+.++.-.-+.+|+ .+|.. .||+.++|.|.+...-+| -..-|-+.++-.||.+||
T Consensus 46 ~~~f~~a~gFrtVleLv---~~y~~LciyWt~~Y~~~~~~v~~~l~~ql-------~~~RPvILDPAdPT~NVa 109 (146)
T d1px5a1 46 KTDFSTAQGFQTVLELV---LKHQKLCIFWEAYYDFTNPVVGRCMLQQL-------KKPRPVILDPADPTGNVG 109 (146)
T ss_dssp CSSCCHHHHHHHHHHHH---HTGGGCEECCCSSCCSSSHHHHHHHHHHH-------TSSSCEEBCTTCTTCBTT
T ss_pred CCCCHHHHHHHHHHHHH---HHHHEEEEEECCCCCCCCHHHHHHHHHHH-------CCCCCCEECCCCCCCCCC
T ss_conf 87750999999999999---76663676313565754256778889873-------568971337989755545
No 5
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=21.20 E-value=26 Score=14.43 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64416524552216898621477777899999999999999999999975
Q gi|254780131|r 28 LTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWY 77 (119)
Q Consensus 28 ~~~~~~~~~~~~~~~~~m~kak~v~~Lsk~EA~~eie~L~k~I~~Hn~~Y 77 (119)
|+|+-.| +-|.. +--|..||+++|+.-+-.|.+...--...|
T Consensus 3 LSLEQqF--~lrsf------~~qV~~mS~EQAqdfLv~Lykqm~irEn~Y 44 (52)
T d1ojha_ 3 LSLEQQF--SIRSF------ATQVQNMSHDQAKDFLVKLYEQMVVREATY 44 (52)
T ss_dssp CCHHHHH--HHHHH------HHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH--HHHHH------HHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5199998--49999------999988589999999999999999889999
No 6
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=20.37 E-value=27 Score=14.33 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHH-HHHHHCC
Q ss_conf 99975445898569899999999999-9999787
Q gi|254780131|r 73 HQKWYYRLDDPLFTDGLYDRVSERLD-ALQEQFP 105 (119)
Q Consensus 73 Hn~~YY~~D~P~ISD~EYD~L~~eL~-~LE~~~P 105 (119)
.|-.|-..-.|-++..+||+++.+.. ++...||
T Consensus 192 ~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p 225 (257)
T d1gq2a2 192 KDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYG 225 (257)
T ss_dssp HCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 2964356567787614789999999999998579
No 7
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=19.08 E-value=28 Score=14.16 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHH-HHHHHC-CC
Q ss_conf 99975445898569899999999999-999978-74
Q gi|254780131|r 73 HQKWYYRLDDPLFTDGLYDRVSERLD-ALQEQF-PE 106 (119)
Q Consensus 73 Hn~~YY~~D~P~ISD~EYD~L~~eL~-~LE~~~-Pe 106 (119)
.|-.|-..-.|-|++.+||+++.+.. ++...| |.
T Consensus 229 ~DPlYlG~R~~R~~g~~Yd~fidefv~av~~~fgp~ 264 (294)
T d1o0sa2 229 NDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQK 264 (294)
T ss_dssp HCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 285325666778870579999999999999750898
No 8
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.85 E-value=26 Score=14.39 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999999999999787426898973538
Q gi|254780131|r 90 YDRVSERLDALQEQFPELFDEDHPWNTV 117 (119)
Q Consensus 90 YD~L~~eL~~LE~~~PeL~~~dSPT~~V 117 (119)
||.+...+.+|..+||+++.-.+.-+.+
T Consensus 15 y~ei~~~l~~l~~~~p~~v~~~~iG~S~ 42 (307)
T d1m4la_ 15 LDEIYDFMDLLVAEHPQLVSKLQIGRSY 42 (307)
T ss_dssp HHHHHHHHHHHHHHCTTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999999998789936999721878
No 9
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.58 E-value=29 Score=14.06 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999999999999787426898973538
Q gi|254780131|r 90 YDRVSERLDALQEQFPELFDEDHPWNTV 117 (119)
Q Consensus 90 YD~L~~eL~~LE~~~PeL~~~dSPT~~V 117 (119)
|+.+...|..|.+.||+++.-.+.-+.+
T Consensus 14 y~ei~~~l~~l~~~~p~~~~~~~iG~S~ 41 (307)
T d1ayea1 14 LEEISQEMDNLVAEHPGLVSKVNIGSSF 41 (307)
T ss_dssp HHHHHHHHHHHHHHCTTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 9999999999998789946999704878
No 10
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]}
Probab=13.66 E-value=39 Score=13.32 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999997874268
Q gi|254780131|r 90 YDRVSERLDALQEQFPELFD 109 (119)
Q Consensus 90 YD~L~~eL~~LE~~~PeL~~ 109 (119)
||.+...|..|+++||+++.
T Consensus 15 y~ei~~~l~~la~~~p~~v~ 34 (317)
T d1jqga1 15 YEEVDAYLQELAKEFPNVVT 34 (317)
T ss_dssp HHHHHHHHHHHHHHCTTTEE
T ss_pred HHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999987899469
Done!