RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent
[Candidatus Liberibacter asiaticus str. psy62]
(119 letters)
>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET:
DNA OMC AMP; 2.30A {Escherichia coli K12}
(A:1-60,A:117-236)
Length = 180
Score = 65.7 bits (160), Expect = 2e-12
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 3 SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSP 58
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium
tuberculosis} (A:1-69)
Length = 69
Score = 60.1 bits (146), Expect = 1e-10
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61
Query: 108 FDEDHP 113
D P
Sbjct: 62 RTPDSP 67
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH
domain, hydrolase; HET: ACR; 2.42A {Arthrobacter
globiformis} (A:774-1020)
Length = 247
Score = 28.0 bits (62), Expect = 0.53
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 72 HHQKWYYRLDDPLFTDGLYD----RVSERLDALQEQFPELFDEDHPWNTVGY 119
+ Y + + G +D V + D + +PW
Sbjct: 15 NGPGTYRYPTNSAYVPGAFDLTGVDVYDAGDDYAFVATIAGEVTNPWGGQAI 66
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} (A:170-331)
Length = 162
Score = 27.1 bits (60), Expect = 0.80
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRL----DDPLFTDGLYDRVSERLDA 99
E + E++ V ++ + R + F +G+ D V L +
Sbjct: 114 ETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKSHLQS 159
>2nnu_A Regulatory protein E2; protein-peptide complex, helical
peptide, three helix bundle, amphipathic helix,
transcription; 1.59A {Human papillomavirus type 16}
(A:1-100)
Length = 100
Score = 27.3 bits (61), Expect = 0.82
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 88 GLYDRVSERLDALQEQFPELFDED 111
G + + +RL+ Q++ ++ D
Sbjct: 3 GSMETLCQRLNVCQDKILTHYEND 26
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex,
AAA+ protein; 2.10A {Human papillomavirus type 18}
(B:1-105)
Length = 105
Score = 26.9 bits (60), Expect = 0.94
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 91 DRVSERLDALQEQFPELFDED 111
+ +SERL ALQ++ + ++ D
Sbjct: 9 ETLSERLSALQDKIIDHYEND 29
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site,
flavivirus, high-throughput assay, viral protein; HET:
PGE; 1.85A {Dengue virus} PDB: 2j7w_A*
(A:1-89,A:268-335,A:466-635)
Length = 327
Score = 26.7 bits (59), Expect = 1.0
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 90 YDRVSERLDALQEQFPE--LFDEDHPWNTVGY 119
D + ER+ ++E+ +D+++P+ T Y
Sbjct: 8 MDVIGERIKRIKEEHNSTWHYDDENPYKTWAY 39
>1r6n_A HPV11 E2 TAD, HPV11 regulatory protein E2, E2 protein; ,
transcription, replication, transcription, replication;
HET: 434; 2.40A {Human papillomavirus type 11} (A:1-102)
Length = 102
Score = 26.5 bits (59), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 91 DRVSERLDALQEQFPELFDED 111
+ +++RLDA Q+Q EL++E+
Sbjct: 8 EAIAKRLDACQDQLLELYEEN 28
>2jex_A Regulatory protein E2; nuclear protein, DNA replication,
phosphorylation, transcription regulation, viral
transcription factor; 2.35A {Bovine papillomavirus type
1} PDB: 2jeu_A (A:1-101)
Length = 101
Score = 26.5 bits (59), Expect = 1.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 91 DRVSERLDALQEQFPELFDED 111
+ ERL QE +L ++
Sbjct: 2 ETACERLHVAQETQMQLIEKS 22
>1dvo_A FINO, fertility inhibition protein O; repressor, bacterial
conjugation, X-RAY crystallography; 2.00A {Escherichia
coli} (A:37-123)
Length = 87
Score = 26.7 bits (59), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 91 DRVSERLDALQEQFPELFDEDHP 113
+ E ++ L+ +P LFD D P
Sbjct: 3 PTLDEAVNTLKPWWPGLFDGDTP 25
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A
{Homo sapiens} (A:)
Length = 187
Score = 25.0 bits (54), Expect = 3.9
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 79 RLDDPLFTDGLY---DRVSERLDALQEQFPELFD 109
L F L V RL L+++ P+ D
Sbjct: 64 GLGRRGFLQTLNATLGCVLHRLADLEQRLPKAQD 97
>3c7a_A Octopine dehydrogenase; L) stereospecific opine
dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD;
2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B*
(A:205-269,A:328-404)
Length = 142
Score = 24.4 bits (53), Expect = 5.4
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 11/43 (25%)
Query: 83 PLFTDGLYDRVSERLD-----------ALQEQFPELFDEDHPW 114
PLF G+ ++ L A+ P ED P
Sbjct: 28 PLFYQGIDQATADMLTACSNECKDVANAIMAACPGNDLEDIPM 70
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane
protein, electron-transfer, oxidoreductase; HET: FME
MD1 HEM AGA 3PH; 1.90A {Escherichia coli}
(B:1-17,B:185-194,B:256-372)
Length = 144
Score = 24.5 bits (53), Expect = 5.4
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLL 28
+Y+ D + R++ ENE ++ Q L
Sbjct: 46 LYDADAIERAASTENEKDLYQRQLDVFL 73
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily,
deoxynivalenol, acetyl COA, fusarium; HET: COA MPO ZBA;
1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A*
2zba_A* (A:1-179)
Length = 179
Score = 24.5 bits (52), Expect = 5.8
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 76 WYYRLDDPLFTDGLYDRVSERLDALQEQFPEL 107
Y + D + + L E P +
Sbjct: 25 LLYPVSDSSQYPTIVSTFEQGLKRFSEAVPWV 56
>2waq_F DNA-directed RNA polymerase RPO4 subunit; multi-subunit,
transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_F
2pmz_F 3hkz_F (F:)
Length = 113
Score = 24.3 bits (53), Expect = 5.8
Identities = 16/61 (26%), Positives = 20/61 (32%)
Query: 12 KFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIAL 71
EH I + KKLL+ K + L+ D V A VE L I
Sbjct: 5 YIVEEHYIPYSVAKKLLSDVIKSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEELSSIIS 64
Query: 72 H 72
Sbjct: 65 R 65
>3k1t_A Glutamate--cysteine ligase GSHA; putative
gamma-glutamylcysteine synthetase, structural genomics;
HET: MSE; 1.90A {Methylobacillus flagellatus KT}
(A:1-93,A:204-229,A:333-432)
Length = 219
Score = 24.1 bits (52), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 19 ITPAQWKKLLTLEAKFLPNKRALESWL 45
+T A LLTLE + L N +E W
Sbjct: 7 LTTALTGPLLTLEKRLLDNXPRIEHWF 33
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,004,266
Number of extensions: 42634
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 31
Length of query: 119
Length of database: 4,956,049
Length adjustment: 71
Effective length of query: 48
Effective length of database: 2,555,894
Effective search space: 122682912
Effective search space used: 122682912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)