RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] (119 letters) >2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:1-60,A:117-236) Length = 180 Score = 65.7 bits (160), Expect = 2e-12 Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 58 EAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113 ++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P Sbjct: 3 SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSP 58 >1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} (A:1-69) Length = 69 Score = 60.1 bits (146), Expect = 1e-10 Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPEL 107 + + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61 Query: 108 FDEDHP 113 D P Sbjct: 62 RTPDSP 67 >1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} (A:774-1020) Length = 247 Score = 28.0 bits (62), Expect = 0.53 Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 4/52 (7%) Query: 72 HHQKWYYRLDDPLFTDGLYD----RVSERLDALQEQFPELFDEDHPWNTVGY 119 + Y + + G +D V + D + +PW Sbjct: 15 NGPGTYRYPTNSAYVPGAFDLTGVDVYDAGDDYAFVATIAGEVTNPWGGQAI 66 >1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} (A:170-331) Length = 162 Score = 27.1 bits (60), Expect = 0.80 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 58 EAMIEVEYLVKIALHHQKWYYRL----DDPLFTDGLYDRVSERLDA 99 E + E++ V ++ + R + F +G+ D V L + Sbjct: 114 ETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKSHLQS 159 >2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} (A:1-100) Length = 100 Score = 27.3 bits (61), Expect = 0.82 Identities = 5/24 (20%), Positives = 13/24 (54%) Query: 88 GLYDRVSERLDALQEQFPELFDED 111 G + + +RL+ Q++ ++ D Sbjct: 3 GSMETLCQRLNVCQDKILTHYEND 26 >1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} (B:1-105) Length = 105 Score = 26.9 bits (60), Expect = 0.94 Identities = 8/21 (38%), Positives = 15/21 (71%) Query: 91 DRVSERLDALQEQFPELFDED 111 + +SERL ALQ++ + ++ D Sbjct: 9 ETLSERLSALQDKIIDHYEND 29 >2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus, high-throughput assay, viral protein; HET: PGE; 1.85A {Dengue virus} PDB: 2j7w_A* (A:1-89,A:268-335,A:466-635) Length = 327 Score = 26.7 bits (59), Expect = 1.0 Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 90 YDRVSERLDALQEQFPE--LFDEDHPWNTVGY 119 D + ER+ ++E+ +D+++P+ T Y Sbjct: 8 MDVIGERIKRIKEEHNSTWHYDDENPYKTWAY 39 >1r6n_A HPV11 E2 TAD, HPV11 regulatory protein E2, E2 protein; , transcription, replication, transcription, replication; HET: 434; 2.40A {Human papillomavirus type 11} (A:1-102) Length = 102 Score = 26.5 bits (59), Expect = 1.2 Identities = 9/21 (42%), Positives = 17/21 (80%) Query: 91 DRVSERLDALQEQFPELFDED 111 + +++RLDA Q+Q EL++E+ Sbjct: 8 EAIAKRLDACQDQLLELYEEN 28 >2jex_A Regulatory protein E2; nuclear protein, DNA replication, phosphorylation, transcription regulation, viral transcription factor; 2.35A {Bovine papillomavirus type 1} PDB: 2jeu_A (A:1-101) Length = 101 Score = 26.5 bits (59), Expect = 1.2 Identities = 6/21 (28%), Positives = 10/21 (47%) Query: 91 DRVSERLDALQEQFPELFDED 111 + ERL QE +L ++ Sbjct: 2 ETACERLHVAQETQMQLIEKS 22 >1dvo_A FINO, fertility inhibition protein O; repressor, bacterial conjugation, X-RAY crystallography; 2.00A {Escherichia coli} (A:37-123) Length = 87 Score = 26.7 bits (59), Expect = 1.3 Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 91 DRVSERLDALQEQFPELFDEDHP 113 + E ++ L+ +P LFD D P Sbjct: 3 PTLDEAVNTLKPWWPGLFDGDTP 25 >1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo sapiens} (A:) Length = 187 Score = 25.0 bits (54), Expect = 3.9 Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%) Query: 79 RLDDPLFTDGLY---DRVSERLDALQEQFPELFD 109 L F L V RL L+++ P+ D Sbjct: 64 GLGRRGFLQTLNATLGCVLHRLADLEQRLPKAQD 97 >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* (A:205-269,A:328-404) Length = 142 Score = 24.4 bits (53), Expect = 5.4 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 11/43 (25%) Query: 83 PLFTDGLYDRVSERLD-----------ALQEQFPELFDEDHPW 114 PLF G+ ++ L A+ P ED P Sbjct: 28 PLFYQGIDQATADMLTACSNECKDVANAIMAACPGNDLEDIPM 70 >1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (B:1-17,B:185-194,B:256-372) Length = 144 Score = 24.5 bits (53), Expect = 5.4 Identities = 8/28 (28%), Positives = 15/28 (53%) Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLL 28 +Y+ D + R++ ENE ++ Q L Sbjct: 46 LYDADAIERAASTENEKDLYQRQLDVFL 73 >2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxynivalenol, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* (A:1-179) Length = 179 Score = 24.5 bits (52), Expect = 5.8 Identities = 5/32 (15%), Positives = 9/32 (28%) Query: 76 WYYRLDDPLFTDGLYDRVSERLDALQEQFPEL 107 Y + D + + L E P + Sbjct: 25 LLYPVSDSSQYPTIVSTFEQGLKRFSEAVPWV 56 >2waq_F DNA-directed RNA polymerase RPO4 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_F 2pmz_F 3hkz_F (F:) Length = 113 Score = 24.3 bits (53), Expect = 5.8 Identities = 16/61 (26%), Positives = 20/61 (32%) Query: 12 KFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIAL 71 EH I + KKLL+ K + L+ D V A VE L I Sbjct: 5 YIVEEHYIPYSVAKKLLSDVIKSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEELSSIIS 64 Query: 72 H 72 Sbjct: 65 R 65 >3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase, structural genomics; HET: MSE; 1.90A {Methylobacillus flagellatus KT} (A:1-93,A:204-229,A:333-432) Length = 219 Score = 24.1 bits (52), Expect = 6.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Query: 19 ITPAQWKKLLTLEAKFLPNKRALESWL 45 +T A LLTLE + L N +E W Sbjct: 7 LTTALTGPLLTLEKRLLDNXPRIEHWF 33 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.136 0.420 Gapped Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,004,266 Number of extensions: 42634 Number of successful extensions: 199 Number of sequences better than 10.0: 1 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 31 Length of query: 119 Length of database: 4,956,049 Length adjustment: 71 Effective length of query: 48 Effective length of database: 2,555,894 Effective search space: 122682912 Effective search space used: 122682912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.8 bits)