BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent
[Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 119

 Score =  247 bits (630), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
           MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1   MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60

Query: 61  IEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
           IEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61  IEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119


>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 119

 Score =  245 bits (626), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%)

Query: 1   MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
           MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1   MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60

Query: 61  IEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
           IEVEYLVKIALHHQKWYYRLD+PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61  IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119


>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 40.4 bits (93), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 51  VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELF-- 108
           + +LS  +A  E+  L +   +H   YY+   P+  D  YD +  R DA+   FP+L   
Sbjct: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68

Query: 109 -DEDHPWNTVG 118
            D + P N +G
Sbjct: 69  EDPNGPLNKIG 79


>gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 383

 Score = 27.3 bits (59), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)

Query: 15  NEHNITPAQWKKLLTLEAKFLPNKRALE 42
           N+   TP+QWKK+L      LP  RA E
Sbjct: 183 NKQRNTPSQWKKIL-----LLPGSRAQE 205


>537021.9.peg.937_1 
          Length = 48

 Score = 25.0 bits (53), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 66 LVKIALHHQKWYYRLDDPLFTD 87
          L+K+ L H    Y +D+PLF  
Sbjct: 24 LIKVILFHSMTGYYIDNPLFCS 45


>gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 123

 Score = 24.3 bits (51), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 25 KKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGE 58
          +++ TL  K   N   LES+LD A+ V  L K +
Sbjct: 65 EQIRTLHEKLALNSSLLESYLDAARVVADLFKKQ 98


>gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 290

 Score = 21.6 bits (44), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 10  SSKFENEHNITPAQWKK 26
            SK  N HNI  + WK+
Sbjct: 265 CSKLANTHNIRISTWKE 281


>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 468

 Score = 21.6 bits (44), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 27  LLTLEAKFLPNKRALESWLDKAKKVTSLSK 56
           LL +    L     LE++++  KK+ ++SK
Sbjct: 186 LLNISPDHLDRHHTLENYVNIKKKIVTMSK 215


>gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 400

 Score = 21.6 bits (44), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 16/24 (66%)

Query: 7   VFRSSKFENEHNITPAQWKKLLTL 30
           V+R+ +F N  N+ P+ +++ L +
Sbjct: 211 VYRNCQFSNIVNVEPSLYERTLVV 234


>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 20.8 bits (42), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 12/47 (25%)

Query: 18  NITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKG-EAMIEV 63
           N+ PA     +TL   F  N  +L+ W+ +AKK     KG EA++++
Sbjct: 192 NLLPAN----ITL--AFASNGNSLDRWMKEAKK-----KGQEAILQI 227


>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 430

 Score = 20.8 bits (42), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 89  LYDRVSERLDALQEQFPELFDEDH 112
           L D +      L+EQ P L  E+H
Sbjct: 69  LVDALKNETSTLKEQLPILEKEEH 92


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,639
Number of Sequences: 1233
Number of extensions: 2707
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 119
length of database: 328,796
effective HSP length: 64
effective length of query: 55
effective length of database: 249,884
effective search space: 13743620
effective search space used: 13743620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)