HHsearch alignment for GI: 254780132 and conserved domain: COG0703
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism].
Probab=97.57 E-value=0.00024 Score=47.22 Aligned_cols=146 Identities=18% Similarity=0.180 Sum_probs=68.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE------ECCCCCC-CCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEE
Q ss_conf 9719999879999989999999851898179986------0278889-88334642010014554221027818766661
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG------VTTRRPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~------~TTR~~R-~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~ 73 (186)
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~-------FR~-------~E---- 61 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIEKRTGMSIAEIFEEEGEEG-------FRR-------LE---- 61 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-------HHH-------HH----
T ss_conf 99618997179997768999999981-998022469999997969999999982899-------999-------99----
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCHH----HHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC------CCCH-H-
Q ss_conf 2870454422002334310242002542000----24442054320000002321899998762014------5448-9-
Q gi|254780132|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGL----APLKKLYEDQVTSIFIAPPSEAELIQRRIKRR------EDIP-F- 141 (186)
Q Consensus 74 ~g~~YGts~~~i~~~~~~g~~~il~id~~G~----~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~------~e~~-~- 141 (186)
T Consensus 62 --------~~vl~~l~~~~~-~Via--TGGG~v~~~enr~~l~~~g~vv~L~~-~~e~l~~Rl~~~~~RPll~~~~~~~~ 129 (172)
T COG0703 62 --------TEVLKELLEEDN-AVIA--TGGGAVLSEENRNLLKKRGIVVYLDA-PFETLYERLQRDRKRPLLQTEDPREE 129 (172)
T ss_pred --------HHHHHHHHHCCC-EEEE--CCCCCCCCHHHHHHHHHCCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf --------999999862699-5997--79861168999999984885899969-99999998234667986567776899
Q ss_pred ---HHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHHHHHHHC
Q ss_conf ---9999999865359889993978-99999999999999730
Q gi|254780132|r 142 ---NLDPDLFGKNHSYSFTIVNNHL-PTACRQVGLIREFVKRG 180 (186)
Q Consensus 142 ---~i~~r~~~~~~~fD~iIiNddl-e~a~~~l~~Iie~l~~~ 180 (186)
T Consensus 130 l~~L~~~R~~~Y~e~a~~~~~~~~~~~~v~~~---i~~~l~~~ 169 (172)
T COG0703 130 LEELLEERQPLYREVADFIIDTDDRSEEVVEE---ILEALEGS 169 (172)
T ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH---HHHHHHHH
T ss_conf 99999998999997274884489984899999---99999873