HHsearch alignment for GI: 254780132 and conserved domain: PRK00625
>PRK00625 shikimate kinase; Provisional.
Probab=98.09 E-value=1.1e-05 Score=55.41 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=66.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE--EC----CCCCC-----CCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEE
Q ss_conf 999879999989999999851898179986--02----78889-----88334642010014554221027818766661
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVG--VT----TRRPR-----VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~--~T----TR~~R-----~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~ 73 (186)
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l-~~~FvD~D~~Ie~~~~~~i~~Si~eIf~~~GE~-------~FR~~E~--~~l----- 67 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL-SLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEE-------GFCEEEA--LAL----- 67 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEECHHHHHHHHCCCCCCCHHHHHHHHCHH-------HHHHHHH--HHH-----
T ss_conf 9998999998899999999993-999577499999986865235699999971899-------9999999--999-----
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCC----CCH----HHHHH
Q ss_conf 2870454422002334310242002542000244420543200000023218999987620145----448----99999
Q gi|254780132|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRE----DIP----FNLDP 145 (186)
Q Consensus 74 ~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~----e~~----~~i~~ 145 (186)
T Consensus 68 ~~l----~~~--~~VIstGGG~v~--~~~n~~~Lk~~----g~vV~L~~-~~e~i~~Rl~~rpl~~~~~~~~~l~~l~~e 134 (173)
T PRK00625 68 ESL----PVI--PSIVALGGGTLM--HEESYDHIRNR----GLLVLLSL-PIATIYQRLQKRGLPERLKKTPSLEEILTQ 134 (173)
T ss_pred HHH----CCC--CCEEECCCCCCC--CHHHHHHHHHC----CEEEEEEC-CHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 973----248--968974885017--89999999968----99999839-999999998269987778835799999999
Q ss_pred HHHHHHHCCCEEEECCCH
Q ss_conf 999865359889993978
Q gi|254780132|r 146 DLFGKNHSYSFTIVNNHL 163 (186)
Q Consensus 146 r~~~~~~~fD~iIiNddl 163 (186)
T Consensus 135 R~~lY~~~AD~iI~~d~~ 152 (173)
T PRK00625 135 RIDRMREIADYIFSLDHV 152 (173)
T ss_pred HHHHHHHHCCEEEECCCC
T ss_conf 999999979999968997