HHsearch alignment for GI: 254780132 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=96.37 E-value=0.054 Score=32.94 Aligned_cols=117 Identities=17% Similarity=0.267 Sum_probs=62.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC--CEEEEE-EECCCCCCCC-CCCCCCHHHCCHHHHHHH-HCCCEEEEEEEECCCE
Q ss_conf 1999987999998999999985189--817998-6027888988-334642010014554221-0278187666612870
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE--YLVMPV-GVTTRRPRVD-EKQYIDYRFISQSQFKGW-KHTGLFIETTKVRDEY 77 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~v-~~TTR~~R~~-E~~g~dY~Fvs~~~F~~~-i~~~~FiE~~~~~g~~ 77 (186)
T Consensus 50 ~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLG------Dr~Rm~~~~~~~~~fiRs~~srg~l 123 (325)
T PRK09435 50 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG------DKTRMERLSRHPNAFIRPSPSSGTL 123 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH------HHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 5997427999868899999999999679858999978999988861010------3888876147998488406778886
Q ss_pred EEEECCCHHH---HHHHCCCCCCCCCCCHHHHH----HHCCCCCEEEEHCCCCCHHHH
Q ss_conf 4544220023---34310242002542000244----420543200000023218999
Q gi|254780132|r 78 YGYLKEDINN---PMEHGYDILLILTHQGLAPL----KKLYEDQVTSIFIAPPSEAEL 128 (186)
Q Consensus 78 YGts~~~i~~---~~~~g~~~il~id~~G~~~l----k~~~~~~~~~IfI~pps~~~L 128 (186)
T Consensus 124 gg~~~~~~~~~~~~~a~g~d~i~i-ETvGvGQ~e~~v~~~~--d~~~~~~~p~~GD~~ 178 (325)
T PRK09435 124 GGVARKTRETMLLCEAAGFDVILV-ETVGVGQSETAVAGMV--DFFLLLQLPGAGDEL 178 (325)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEE-EECCCCHHHHHHHHHC--CEEEEEECCCCCCHH
T ss_conf 773354999999999779998999-7067771488998742--668888358876088