HHsearch alignment for GI: 254780132 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=96.75 E-value=0.0018 Score=41.83 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-ECCCCC
Q ss_conf 719999879999989999999851898179986-027888
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG-VTTRRP 40 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~-~TTR~~ 40 (186)
T Consensus 162 r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL 201 (343)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (343)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 9889998889861999999999628965527996115002