HHsearch alignment for GI: 254780132 and conserved domain: PRK13946
>PRK13946 shikimate kinase; Provisional.
Probab=98.01 E-value=5.2e-05 Score=51.23 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=66.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE--ECC----CCCCC-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEEEC
Q ss_conf 719999879999989999999851898179986--027----88898-83346420100145542210278187666612
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG--VTT----RRPRV-DEKQYIDYRFISQSQFKGWKHTGLFIETTKVR 74 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~--~TT----R~~R~-~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~ 74 (186)
T Consensus 20 kknIvLIG~mGsGKStvGk~LA~~L-~~~fiD~D~~IE~~~g~sI~eIF~~~GE-------~~FR~~E~----------- 80 (195)
T PRK13946 20 KRTVVLVGLMGAGKSTVGRRLATML-GLPFLDADTEIERAARMTIPEIFATYGE-------PEFRDLER----------- 80 (195)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEEECHHHHHHHHCCCHHHHHHHHCH-------HHHHHHHH-----------
T ss_conf 9958998999998899999999997-9798988599999809989999998697-------99999899-----------
Q ss_pred CCEEEEECCCHHHH-------HHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC-------CCCH
Q ss_conf 87045442200233-------431024200254200024442054320000002321899998762014-------5448
Q gi|254780132|r 75 DEYYGYLKEDINNP-------MEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDIP 140 (186)
Q Consensus 75 g~~YGts~~~i~~~-------~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~e~~ 140 (186)
T Consensus 81 --------~~l~~l~~~~~~VIstGGG~v~--~~~n~~~L~~----~g~vI~L~~-~~e~l~~Rl~~~~~RPLl~~~~~~ 145 (195)
T PRK13946 81 --------RVIARLLKGGPLVLATGGGAFM--NEETRAAIRE----KGISVWLKA-DLDVLWERVSRRDTRPLLRTADPK 145 (195)
T ss_pred --------HHHHHHHCCCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf --------9999986489879975874236--8999999995----796899849-999999997289999989998879
Q ss_pred HHH----HHHHHHHHHCCCEEEECC--CHHHHHHHHHHHH
Q ss_conf 999----999998653598899939--7899999999999
Q gi|254780132|r 141 FNL----DPDLFGKNHSYSFTIVNN--HLPTACRQVGLIR 174 (186)
Q Consensus 141 ~~i----~~r~~~~~~~fD~iIiNd--dle~a~~~l~~Ii 174 (186)
T Consensus 146 ~~l~~l~~~R~~lY~~-Ad~~I~t~~~s~~~ia~eIi~~L 184 (195)
T PRK13946 146 ETLARLMEERYPVYAQ-ADLTVESRDVPHEVIADEVIEAL 184 (195)
T ss_pred HHHHHHHHHHHHHHHH-CCEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999999999999997-89898899899999999999999