HHsearch alignment for GI: 254780132 and conserved domain: TIGR00041
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.66 E-value=7.1e-06 Score=56.44 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHC----CHHHHHHHH-CCCEEEEEEEEC
Q ss_conf 9719999879999989999999851898-1799860278889883346420100----145542210-278187666612
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFI----SQSQFKGWK-HTGLFIETTKVR 74 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~TTR~~R~~E~~g~dY~Fv----s~~~F~~~i-~~~~FiE~~~~~ 74 (186)
T Consensus 1 m~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~-~~~t~EPg~t~~-ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~ 78 (211)
T TIGR00041 1 MGMFIVIEGIDGAGKTTQLNLLKKLLKELEGYK-VLFTREPGGTPI-GEKIRELLQDLLNENEEPLTDKTEALLFAADRH 78 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCE-EEEEECCCCCHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 974588851158758999999999977513834-788718999878-999999999874146663359999999998589
Q ss_pred CCEEEEECCCHHHHHHHCCCCCCC---------------CCCCHHHHHHHCCCC--CE-EEEHCCCCCHHHHHHHHHHCC
Q ss_conf 870454422002334310242002---------------542000244420543--20-000002321899998762014
Q gi|254780132|r 75 DEYYGYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--QV-TSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 75 g~~YGts~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~~-~~IfI~pps~~~L~~RL~~R~ 136 (186)
T Consensus 79 ~HL~~-~~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~-d~e~al~R~~~~g 156 (211)
T TIGR00041 79 DHLEH-VEEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDI-DPEVALERLRKRG 156 (211)
T ss_pred HHHHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE-CHHHHHHHHHCCC
T ss_conf 99997-898778898669679984112435777542256888899999775211358666898860-7377988752047
Q ss_pred C
Q ss_conf 5
Q gi|254780132|r 137 E 137 (186)
Q Consensus 137 ~ 137 (186)
T Consensus 157 ~ 157 (211)
T TIGR00041 157 E 157 (211)
T ss_pred C
T ss_conf 2