HHsearch alignment for GI: 254780132 and conserved domain: TIGR00041

>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.66  E-value=7.1e-06  Score=56.44  Aligned_cols=133  Identities=17%  Similarity=0.114  Sum_probs=80.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHC----CHHHHHHHH-CCCEEEEEEEEC
Q ss_conf             9719999879999989999999851898-1799860278889883346420100----145542210-278187666612
Q gi|254780132|r    1 MAHIFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFI----SQSQFKGWK-HTGLFIETTKVR   74 (186)
Q Consensus         1 m~kiivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~TTR~~R~~E~~g~dY~Fv----s~~~F~~~i-~~~~FiE~~~~~   74 (186)
T Consensus         1 m~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~-~~~t~EPg~t~~-ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~   78 (211)
T TIGR00041         1 MGMFIVIEGIDGAGKTTQLNLLKKLLKELEGYK-VLFTREPGGTPI-GEKIRELLQDLLNENEEPLTDKTEALLFAADRH   78 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCE-EEEEECCCCCHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             974588851158758999999999977513834-788718999878-999999999874146663359999999998589


Q ss_pred             CCEEEEECCCHHHHHHHCCCCCCC---------------CCCCHHHHHHHCCCC--CE-EEEHCCCCCHHHHHHHHHHCC
Q ss_conf             870454422002334310242002---------------542000244420543--20-000002321899998762014
Q gi|254780132|r   75 DEYYGYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--QV-TSIFIAPPSEAELIQRRIKRR  136 (186)
Q Consensus        75 g~~YGts~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~~-~~IfI~pps~~~L~~RL~~R~  136 (186)
T Consensus        79 ~HL~~-~~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~-d~e~al~R~~~~g  156 (211)
T TIGR00041        79 DHLEH-VEEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDI-DPEVALERLRKRG  156 (211)
T ss_pred             HHHHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE-CHHHHHHHHHCCC
T ss_conf             99997-898778898669679984112435777542256888899999775211358666898860-7377988752047


Q ss_pred             C
Q ss_conf             5
Q gi|254780132|r  137 E  137 (186)
Q Consensus       137 ~  137 (186)
T Consensus       157 ~  157 (211)
T TIGR00041       157 E  157 (211)
T ss_pred             C
T ss_conf             2