HHsearch alignment for GI: 254780132 and conserved domain: TIGR00382

>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.27  E-value=0.00024  Score=47.15  Aligned_cols=91  Identities=18%  Similarity=0.265  Sum_probs=55.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEE-EEEEEECCCEEEEEC
Q ss_conf             999879999989999999851898179986-027888988334642010014554221027818-766661287045442
Q gi|254780132|r    5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVG-VTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLK   82 (186)
Q Consensus         5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~-~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~F-iE~~~~~g~~YGts~   82 (186)
T Consensus       155 ILLiGPTGSGKTLLAqTLA~~L-~VPfAiADATt-LTEAGYV-GED---V-ENIL~~Llq~ad~DV~kA~-kGIiY---I  223 (452)
T TIGR00382       155 ILLIGPTGSGKTLLAQTLARIL-NVPFAIADATT-LTEAGYV-GED---V-ENILLKLLQAADYDVEKAQ-KGIIY---I  223 (452)
T ss_pred             EEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHH-HHCCCCC-CCC---H-HHHHHHHHHHCCCCHHHHC-CCEEE---E
T ss_conf             2454688852689999999873-88742111110-2006642-422---8-8999999874145524527-85089---8


Q ss_pred             CCHHHHHHH--CCCCCCCCCCCHHHH
Q ss_conf             200233431--024200254200024
Q gi|254780132|r   83 EDINNPMEH--GYDILLILTHQGLAP  106 (186)
Q Consensus        83 ~~i~~~~~~--g~~~il~id~~G~~~  106 (186)
T Consensus       224 DEIDKIaRkSEN~SITRDVSGEGVQQ  249 (452)
T TIGR00382       224 DEIDKIARKSENPSITRDVSGEGVQQ  249 (452)
T ss_pred             ECCCCHHHHCCCCEEEEEECCCHHHH
T ss_conf             42231012157780112217554999