HHsearch alignment for GI: 254780132 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.27 E-value=0.00024 Score=47.15 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=55.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEE-EEEEEECCCEEEEEC
Q ss_conf 999879999989999999851898179986-027888988334642010014554221027818-766661287045442
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVG-VTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLK 82 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~-~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~F-iE~~~~~g~~YGts~ 82 (186)
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L-~VPfAiADATt-LTEAGYV-GED---V-ENIL~~Llq~ad~DV~kA~-kGIiY---I 223 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARIL-NVPFAIADATT-LTEAGYV-GED---V-ENILLKLLQAADYDVEKAQ-KGIIY---I 223 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHH-HHCCCCC-CCC---H-HHHHHHHHHHCCCCHHHHC-CCEEE---E
T ss_conf 2454688852689999999873-88742111110-2006642-422---8-8999999874145524527-85089---8
Q ss_pred CCHHHHHHH--CCCCCCCCCCCHHHH
Q ss_conf 200233431--024200254200024
Q gi|254780132|r 83 EDINNPMEH--GYDILLILTHQGLAP 106 (186)
Q Consensus 83 ~~i~~~~~~--g~~~il~id~~G~~~ 106 (186)
T Consensus 224 DEIDKIaRkSEN~SITRDVSGEGVQQ 249 (452)
T TIGR00382 224 DEIDKIARKSENPSITRDVSGEGVQQ 249 (452)
T ss_pred ECCCCHHHHCCCCEEEEEECCCHHHH
T ss_conf 42231012157780112217554999