HHsearch alignment for GI: 254780132 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.78 E-value=2.8e-05 Score=52.85 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 719999879999989999999851--8981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN--SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~--~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
T Consensus 491 Ge~IGIvGpSGSGKSTLTK-L~QRLYtP~~GqVL-----------VDG~DLA~~DP~wLRRQ~ 541 (703)
T TIGR01846 491 GEVIGIVGPSGSGKSTLTK-LLQRLYTPEHGQVL-----------VDGVDLAIADPAWLRRQV 541 (703)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHHCCCCCCEEE-----------ECCCCCCCCCCCHHHHCC
T ss_conf 6579987278986789999-98861488887477-----------703000101852010223