HHsearch alignment for GI: 254780132 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.40 E-value=0.00019 Score=47.73 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=42.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC---CCEEEEEEEECCCE-
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102---78187666612870-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIETTKVRDEY- 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~---~~~FiE~~~~~g~~- 77 (186)
T Consensus 491 Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i----------~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~ 560 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV----------LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560 (694)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCEE----------EECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHH
T ss_conf 97899980589878899998556758998879----------98985425499999973021357677110746999984
Q ss_pred EEE
Q ss_conf 454
Q gi|254780132|r 78 YGY 80 (186)
Q Consensus 78 YGt 80 (186)
T Consensus 561 ~~~ 563 (694)
T TIGR03375 561 LGA 563 (694)
T ss_pred CCC
T ss_conf 169