HHsearch alignment for GI: 254780132 and conserved domain: cd00227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.46 E-value=7.1e-06 Score=56.42 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE--ECCCCCCCCC-CCCCCHHHCCHHHHHHHHCCCEEEEE-EEECC
Q ss_conf 719999879999989999999851898--179986--0278889883-34642010014554221027818766-66128
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY--LVMPVG--VTTRRPRVDE-KQYIDYRFISQSQFKGWKHTGLFIET-TKVRD 75 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~--~~~~v~--~TTR~~R~~E-~~g~dY~Fvs~~~F~~~i~~~~FiE~-~~~~g 75 (186)
T Consensus 2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--------~~-----~~~~~~~g~~~~ 68 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--------FD-----GDGGVSPGPEFR 68 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--------CC-----CCCCCCCCHHHH
T ss_conf 74999868998988999999998476756884185898867631368754223--------48-----776635415699
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCCCH---HHHHHHC-CCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHH---H
Q ss_conf 7045442200233431024200254200---0244420-5432000000232189999876201454489999999---9
Q gi|254780132|r 76 EYYGYLKEDINNPMEHGYDILLILTHQG---LAPLKKL-YEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDL---F 148 (186)
Q Consensus 76 ~~YGts~~~i~~~~~~g~~~il~id~~G---~~~lk~~-~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~---~ 148 (186)
T Consensus 69 ~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~-l~~l~~RE~~RgDR~~G-~A~~q~~~V 146 (175)
T cd00227 69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG-QARKQARVV 146 (175)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC-HHHHHHHHH
T ss_conf 9999999999999977998898631238088999999857992799998789-99999998745899964-678899984
Q ss_pred HHHHCCCEEEEC--CCHHHHHHHHH
Q ss_conf 865359889993--97899999999
Q gi|254780132|r 149 GKNHSYSFTIVN--NHLPTACRQVG 171 (186)
Q Consensus 149 ~~~~~fD~iIiN--ddle~a~~~l~ 171 (186)
T Consensus 147 H~~~~YDleVDTs~~sp~eCA~~I~ 171 (175)
T cd00227 147 HAGVEYDLEVDTTHKTPIECARAIA 171 (175)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 3599885687799999999999999