HHsearch alignment for GI: 254780132 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.00099 Score=43.45 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE-CCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEEC-CCEEE
Q ss_conf 7199998799999899999998518981799860-278889883346420100145542210278187666612-87045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGV-TTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVR-DEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~-TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~-g~~YG 79 (186)
T Consensus 25 ~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v--~----------------l~~~~~~~~~~~~ 86 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWV--R----------------LVTRPGNVEGSGE 86 (186)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEE--E----------------EEEECCCCCCCCE
T ss_conf 998999899999899999999961334564598415354047777568--8----------------8860464578650
Q ss_pred -EECCCHHHHHHHCCCCCCCCCCCHHHH---HHHCC-CC-CE-EEEHCCCCCHHHHHHHHHH---CCCCCHHHHHHHHHH
Q ss_conf -442200233431024200254200024---44205-43-20-0000023218999987620---145448999999998
Q gi|254780132|r 80 -YLKEDINNPMEHGYDILLILTHQGLAP---LKKLY-ED-QV-TSIFIAPPSEAELIQRRIK---RREDIPFNLDPDLFG 149 (186)
Q Consensus 80 -ts~~~i~~~~~~g~~~il~id~~G~~~---lk~~~-~~-~~-~~IfI~pps~~~L~~RL~~---R~~e~~~~i~~r~~~ 149 (186)
T Consensus 87 ~~~~~li~~aLR~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltTi--Ha~s~~~ai~Rl~~l~~~~~~~~~~~~~~i-- 162 (186)
T cd01130 87 VTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTI--HANSAEEALTRLELLPSNVPLGRPLLREQI-- 162 (186)
T ss_pred ECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCHHHHHHHH--
T ss_conf 3499998873668997373175683999999999974898603031--589999999999988754799999999999--
Q ss_pred HHHCCCEEEE
Q ss_conf 6535988999
Q gi|254780132|r 150 KNHSYSFTIV 159 (186)
Q Consensus 150 ~~~~fD~iIi 159 (186)
T Consensus 163 -a~~id~vV~ 171 (186)
T cd01130 163 -KEAIDVIVH 171 (186)
T ss_pred -HHHCCEEEE
T ss_conf -975779999