HHsearch alignment for GI: 254780132 and conserved domain: cd03240

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.08  E-value=0.00051  Score=45.19  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=20.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             719999879999989999999851
Q gi|254780132|r    2 AHIFVLIGASGVGKTTIAKQVVLN   25 (186)
Q Consensus         2 ~kiivi~GpsGsGK~tl~~~L~~~   25 (186)
T Consensus        22 ~~itaivG~NGaGKSTLl~~i~~~   45 (204)
T cd03240          22 SPLTLIVGQNGAGKTTIIEALKYA   45 (204)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             888999989999999999998630