HHsearch alignment for GI: 254780132 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.08 E-value=0.00051 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
T Consensus 22 ~~itaivG~NGaGKSTLl~~i~~~ 45 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 888999989999999999998630