HHsearch alignment for GI: 254780132 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.66 E-value=0.0014 Score=42.47 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 719999879999989999999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQV 22 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L 22 (186)
T Consensus 21 Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 21 NKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHH
T ss_conf 989999878996098983616