HHsearch alignment for GI: 254780132 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.32 E-value=0.0002 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7199998799999899999998
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~ 23 (186)
T Consensus 21 G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999998799986999999998