HHsearch alignment for GI: 254780132 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00014 Score=48.54 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518-981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~-~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
T Consensus 50 GE~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I-----------~~~G~~i~~~~~~~l~~~r 100 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-----------LIDGQDIAAMSRKELRELR 100 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-----------EECCEECCCCCHHHHHHHH
T ss_conf 99999998998489999999975999997599-----------9999999999989998852