HHsearch alignment for GI: 254780132 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.34 E-value=0.00018 Score=47.91 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
T Consensus 26 Ge~~~i~GpSG~GKSTlLr~iaGl 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999988099999999769