HHsearch alignment for GI: 254780132 and conserved domain: cd04120
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.52 E-value=0.014 Score=36.43 Aligned_cols=148 Identities=12% Similarity=0.204 Sum_probs=63.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCE--EEEEEEECCC-EEEEE
Q ss_conf 99987999998999999985189817998602788898833464201001455422102781--8766661287-04544
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGL--FIETTKVRDE-YYGYL 81 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~--FiE~~~~~g~-~YGts 81 (186)
T Consensus 3 IvllGd~gVGKTsLi~rf~~~--~F~~--~y~~-------Tig~d~~~k~---i~---~~~~~v~l~IWDTaGqe~f~sl 65 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDD--TFCE--ACKS-------GVGVDFKIKT---VE---LRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCC--CCCC--CCCC-------CCCEEEEEEE---EE---ECCEEEEEEEEECCCCCCCCCC
T ss_conf 999997997299999999549--9999--8799-------7646889999---99---9999999999979886124523
Q ss_pred CCCHHHHHHHCCCCCCCCCCC-HHHHHH-------HCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 220023343102420025420-002444-------205432000000232189999876201454489999999986535
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQ-GLAPLK-------KLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNHS 153 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~-G~~~lk-------~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~~ 153 (186)
T Consensus 66 ~~~y-yr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~-~iiLV-GNK~DL~~---~R--~Vs~~e~~~~A~~~~~ 137 (202)
T cd04120 66 TSAY-YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA-ELLLV-GNKLDCET---DR--EISRQQGEKFAQQITG 137 (202)
T ss_pred HHHH-HHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEE-EECCCCHH---HC--CCCHHHHHHHHHHCCC
T ss_conf 5788-7641445899856888999999999999997466887-18987-65365053---17--8799999999982799
Q ss_pred CCEE----EECCCHHHHHHHH-HHHHHHH
Q ss_conf 9889----9939789999999-9999999
Q gi|254780132|r 154 YSFT----IVNNHLPTACRQV-GLIREFV 177 (186)
Q Consensus 154 fD~i----IiNddle~a~~~l-~~Iie~l 177 (186)
T Consensus 138 ~~f~EtSAkt~~nV~e~F~~l~~~i~~~~ 166 (202)
T cd04120 138 MRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 88999258999698999999999999858