HHsearch alignment for GI: 254780132 and conserved domain: cd04120

>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.52  E-value=0.014  Score=36.43  Aligned_cols=148  Identities=12%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCE--EEEEEEECCC-EEEEE
Q ss_conf             99987999998999999985189817998602788898833464201001455422102781--8766661287-04544
Q gi|254780132|r    5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGL--FIETTKVRDE-YYGYL   81 (186)
Q Consensus         5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~--FiE~~~~~g~-~YGts   81 (186)
T Consensus         3 IvllGd~gVGKTsLi~rf~~~--~F~~--~y~~-------Tig~d~~~k~---i~---~~~~~v~l~IWDTaGqe~f~sl   65 (202)
T cd04120           3 VIIIGSRGVGKTSLMRRFTDD--TFCE--ACKS-------GVGVDFKIKT---VE---LRGKKIRLQIWDTAGQERFNSI   65 (202)
T ss_pred             EEEECCCCCCHHHHHHHHHCC--CCCC--CCCC-------CCCEEEEEEE---EE---ECCEEEEEEEEECCCCCCCCCC
T ss_conf             999997997299999999549--9999--8799-------7646889999---99---9999999999979886124523


Q ss_pred             CCCHHHHHHHCCCCCCCCCCC-HHHHHH-------HCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             220023343102420025420-002444-------205432000000232189999876201454489999999986535
Q gi|254780132|r   82 KEDINNPMEHGYDILLILTHQ-GLAPLK-------KLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNHS  153 (186)
Q Consensus        82 ~~~i~~~~~~g~~~il~id~~-G~~~lk-------~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~~  153 (186)
T Consensus        66 ~~~y-yr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~-~iiLV-GNK~DL~~---~R--~Vs~~e~~~~A~~~~~  137 (202)
T cd04120          66 TSAY-YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA-ELLLV-GNKLDCET---DR--EISRQQGEKFAQQITG  137 (202)
T ss_pred             HHHH-HHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEE-EECCCCHH---HC--CCCHHHHHHHHHHCCC
T ss_conf             5788-7641445899856888999999999999997466887-18987-65365053---17--8799999999982799


Q ss_pred             CCEE----EECCCHHHHHHHH-HHHHHHH
Q ss_conf             9889----9939789999999-9999999
Q gi|254780132|r  154 YSFT----IVNNHLPTACRQV-GLIREFV  177 (186)
Q Consensus       154 fD~i----IiNddle~a~~~l-~~Iie~l  177 (186)
T Consensus       138 ~~f~EtSAkt~~nV~e~F~~l~~~i~~~~  166 (202)
T cd04120         138 MRFCEASAKDNFNVDEIFLKLVDDILKKM  166 (202)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             88999258999698999999999999858