Query gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 186
No_of_seqs 127 out of 2742
Neff 7.2
Searched_HMMs 39220
Date Sun May 22 12:05:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780132.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00300 gmk guanylate kinase; 100.0 0 0 399.1 16.4 181 1-182 6-195 (208)
2 COG0194 Gmk Guanylate kinase [ 100.0 0 0 392.4 16.1 173 1-175 3-181 (191)
3 TIGR03263 guanyl_kin guanylate 100.0 0 0 386.6 16.4 173 2-175 1-179 (180)
4 pfam00625 Guanylate_kin Guanyl 100.0 0 0 366.3 13.6 172 3-175 2-180 (182)
5 smart00072 GuKc Guanylate kina 100.0 0 0 354.9 12.9 174 2-176 2-182 (184)
6 PRK10078 ribose 1,5-bisphospho 100.0 0 0 321.5 16.7 176 1-181 1-181 (184)
7 cd00071 GMPK Guanosine monopho 100.0 1.4E-45 0 297.2 9.2 130 4-134 1-131 (137)
8 KOG0609 consensus 100.0 2.9E-44 0 288.8 11.2 179 3-182 341-534 (542)
9 KOG0707 consensus 100.0 2.5E-41 0 271.1 9.8 172 3-175 38-220 (231)
10 TIGR02322 phosphon_PhnN phosph 100.0 6.6E-31 1.7E-35 208.0 14.1 163 2-174 1-180 (183)
11 COG3709 Uncharacterized compon 99.9 4.2E-26 1.1E-30 178.9 15.2 164 1-174 4-180 (192)
12 KOG0708 consensus 99.8 6.4E-18 1.6E-22 129.4 10.3 156 4-177 189-349 (359)
13 PRK08356 hypothetical protein; 98.9 2.9E-09 7.4E-14 77.0 4.9 152 1-178 3-194 (195)
14 PRK11545 gntK gluconate kinase 98.9 1.6E-08 4.2E-13 72.4 8.6 153 3-182 9-176 (177)
15 PRK09825 idnK D-gluconate kina 98.8 2.6E-08 6.7E-13 71.2 6.8 154 2-179 3-171 (176)
16 PRK08233 hypothetical protein; 98.7 2.2E-07 5.7E-12 65.5 10.2 145 3-173 4-174 (182)
17 PRK02496 adk adenylate kinase; 98.7 8.4E-08 2.1E-12 68.1 7.1 160 1-174 1-182 (185)
18 pfam07931 CPT Chloramphenicol 98.6 2.7E-07 6.8E-12 65.1 9.0 155 2-171 1-170 (174)
19 PRK12339 2-phosphoglycerate ki 98.6 2.8E-07 7.1E-12 64.9 9.0 162 2-174 3-195 (197)
20 PTZ00301 uridine kinase; Provi 98.6 4.1E-07 1.1E-11 63.9 9.9 138 1-148 1-165 (210)
21 PRK05480 uridine kinase; Provi 98.6 1E-06 2.5E-11 61.6 10.8 159 4-172 8-200 (209)
22 cd02023 UMPK Uridine monophosp 98.6 6.4E-07 1.6E-11 62.8 9.6 157 4-170 1-191 (198)
23 PRK06696 uridine kinase; Valid 98.6 4E-07 1E-11 64.0 8.3 155 4-164 28-217 (227)
24 PRK01184 hypothetical protein; 98.5 6.2E-07 1.6E-11 62.9 8.9 164 3-181 2-182 (183)
25 cd02021 GntK Gluconate kinase 98.5 8.6E-08 2.2E-12 68.0 3.7 114 4-137 1-120 (150)
26 PRK04182 cytidylate kinase; Pr 98.5 1.2E-06 3.1E-11 61.1 8.7 155 4-181 2-177 (178)
27 cd00227 CPT Chloramphenicol (C 98.5 7.1E-06 1.8E-10 56.4 12.4 155 2-171 2-171 (175)
28 TIGR01359 UMP_CMP_kin_fam UMP- 98.5 6.1E-07 1.5E-11 62.9 6.9 151 5-174 2-188 (189)
29 PRK00131 aroK shikimate kinase 98.5 6.1E-07 1.6E-11 62.9 6.9 145 2-177 4-172 (175)
30 PRK04220 2-phosphoglycerate ki 98.4 3.9E-06 1E-10 58.0 10.2 167 4-179 94-294 (306)
31 PRK00091 miaA tRNA delta(2)-is 98.4 2.3E-07 5.8E-12 65.5 3.8 54 1-54 3-65 (304)
32 TIGR02173 cyt_kin_arch cytidyl 98.4 4.3E-07 1.1E-11 63.8 5.2 110 4-137 2-115 (173)
33 PRK00279 adk adenylate kinase; 98.4 5.1E-07 1.3E-11 63.4 5.3 158 5-176 3-214 (215)
34 PRK03839 putative kinase; Prov 98.4 4E-06 1E-10 57.9 9.8 134 4-175 2-152 (180)
35 TIGR01313 therm_gnt_kin carboh 98.4 3.1E-07 7.9E-12 64.7 3.6 143 5-170 1-169 (175)
36 pfam00485 PRK Phosphoribulokin 98.4 1.1E-06 2.7E-11 61.4 6.1 133 4-145 1-164 (196)
37 cd02028 UMPK_like Uridine mono 98.3 2.2E-06 5.5E-11 59.6 7.6 130 4-145 1-154 (179)
38 PRK00698 tmk thymidylate kinas 98.3 6.3E-07 1.6E-11 62.8 4.8 39 2-41 3-41 (204)
39 COG0125 Tmk Thymidylate kinase 98.3 9.4E-07 2.4E-11 61.8 5.4 167 1-175 2-202 (208)
40 COG1936 Predicted nucleotide k 98.3 1.7E-05 4.4E-10 54.1 11.7 146 3-183 1-163 (180)
41 COG1102 Cmk Cytidylate kinase 98.3 4E-06 1E-10 58.0 8.0 110 4-136 2-112 (179)
42 PRK09270 frcK putative fructos 98.3 6.1E-06 1.6E-10 56.8 8.6 23 4-26 36-58 (230)
43 COG0563 Adk Adenylate kinase a 98.3 5.8E-06 1.5E-10 57.0 8.3 156 4-172 2-175 (178)
44 PRK13947 shikimate kinase; Pro 98.3 6.9E-06 1.8E-10 56.5 8.7 147 1-178 1-169 (171)
45 PRK13974 thymidylate kinase; P 98.2 2.8E-06 7.2E-11 58.9 6.2 171 2-180 3-211 (212)
46 PRK00081 coaE dephospho-CoA ki 98.2 4.1E-06 1E-10 57.9 6.8 63 116-179 128-197 (199)
47 KOG3354 consensus 98.2 9.3E-07 2.4E-11 61.8 3.3 143 4-170 14-182 (191)
48 COG0572 Udk Uridine kinase [Nu 98.2 2.4E-06 6E-11 59.3 5.4 132 4-147 10-165 (218)
49 PRK13975 thymidylate kinase; P 98.2 5.5E-06 1.4E-10 57.1 7.3 38 1-44 1-38 (198)
50 COG2074 2-phosphoglycerate kin 98.2 7.8E-06 2E-10 56.2 7.9 168 3-180 90-292 (299)
51 PRK03731 aroL shikimate kinase 98.2 1.2E-05 3E-10 55.1 8.2 148 1-179 1-170 (172)
52 TIGR03574 selen_PSTK L-seryl-t 98.2 1.3E-05 3.2E-10 54.9 8.1 148 4-179 1-169 (249)
53 PRK05541 adenylylsulfate kinas 98.2 2.4E-06 6.2E-11 59.3 4.4 146 2-179 7-172 (176)
54 TIGR02204 MsbA_rel ABC transpo 98.1 3.5E-06 8.8E-11 58.3 4.8 77 2-89 366-447 (576)
55 PRK00625 shikimate kinase; Pro 98.1 1.1E-05 2.7E-10 55.4 6.5 131 5-163 3-152 (173)
56 PRK00889 adenylylsulfate kinas 98.1 5.2E-06 1.3E-10 57.2 4.7 146 2-179 4-170 (175)
57 PRK11160 cysteine/glutathione 98.1 3.5E-06 8.8E-11 58.3 3.8 76 2-87 367-446 (575)
58 PRK06762 hypothetical protein; 98.1 1.3E-05 3.4E-10 54.8 6.6 28 1-28 1-28 (166)
59 cd02024 NRK1 Nicotinamide ribo 98.0 1.2E-05 3E-10 55.1 6.1 27 4-30 1-27 (187)
60 PRK07667 uridine kinase; Provi 98.0 5.8E-05 1.5E-09 50.9 9.1 134 4-149 16-170 (190)
61 PRK11174 cysteine/glutathione 98.0 7.2E-06 1.8E-10 56.4 4.5 77 2-89 376-456 (588)
62 PRK13946 shikimate kinase; Pro 98.0 5.2E-05 1.3E-09 51.2 8.8 138 2-174 20-184 (195)
63 PRK05057 aroK shikimate kinase 98.0 3.9E-05 1E-09 52.0 8.1 150 2-180 4-172 (172)
64 PRK03846 adenylylsulfate kinas 98.0 1.1E-05 2.8E-10 55.3 5.2 147 2-180 24-193 (198)
65 PRK00023 cmk cytidylate kinase 98.0 0.00026 6.7E-09 46.9 12.0 27 1-27 2-29 (225)
66 PRK04040 adenylate kinase; Pro 98.0 0.00016 4E-09 48.3 10.5 156 1-174 1-187 (189)
67 COG1132 MdlB ABC-type multidru 97.9 3.5E-06 9E-11 58.3 1.9 92 2-104 355-455 (567)
68 PRK13657 cyclic beta-1,2-gluca 97.9 7.7E-06 2E-10 56.2 3.5 70 2-82 361-435 (585)
69 TIGR00955 3a01204 Pigment prec 97.9 9.8E-06 2.5E-10 55.6 4.0 50 2-61 58-108 (671)
70 PRK12289 ribosome-associated G 97.9 3.7E-06 9.4E-11 58.2 1.8 24 2-25 171-194 (351)
71 TIGR00763 lon ATP-dependent pr 97.9 9.4E-06 2.4E-10 55.7 3.8 85 2-89 449-547 (941)
72 COG4088 Predicted nucleotide k 97.9 8.3E-05 2.1E-09 50.0 8.6 125 3-150 2-137 (261)
73 PRK07429 phosphoribulokinase; 97.9 5.1E-05 1.3E-09 51.2 7.4 124 4-141 10-156 (331)
74 cd01428 ADK Adenylate kinase ( 97.9 5.4E-06 1.4E-10 57.2 2.3 134 5-151 2-166 (194)
75 PRK07261 topology modulation p 97.9 9.3E-06 2.4E-10 55.7 3.3 84 5-99 3-87 (171)
76 PRK06547 hypothetical protein; 97.9 0.00028 7E-09 46.8 10.3 127 3-143 16-146 (184)
77 PRK08154 anaerobic benzoate ca 97.9 5.1E-05 1.3E-09 51.2 6.5 146 3-175 134-300 (304)
78 PRK11176 lipid transporter ATP 97.8 1.4E-05 3.6E-10 54.6 3.5 79 2-90 368-454 (581)
79 PRK10789 putative multidrug tr 97.8 1.4E-05 3.5E-10 54.7 3.2 78 2-89 341-425 (569)
80 PRK13949 shikimate kinase; Pro 97.8 0.0001 2.7E-09 49.4 7.7 29 1-31 1-29 (169)
81 PRK10522 multidrug transporter 97.8 2.7E-05 6.8E-10 53.0 4.5 51 2-62 349-399 (547)
82 pfam02223 Thymidylate_kin Thym 97.8 1.2E-05 3.1E-10 55.0 2.6 36 8-44 2-37 (186)
83 cd02026 PRK Phosphoribulokinas 97.8 8.2E-05 2.1E-09 50.0 6.7 130 4-147 1-156 (273)
84 cd03251 ABCC_MsbA MsbA is an e 97.8 3.1E-05 7.9E-10 52.6 4.5 51 2-62 28-78 (234)
85 TIGR01846 type_I_sec_HlyB type 97.8 2.8E-05 7.1E-10 52.9 4.2 49 2-62 491-541 (703)
86 cd03253 ABCC_ATM1_transporter 97.8 3.2E-05 8.2E-10 52.5 4.5 51 2-62 27-77 (236)
87 pfam03193 DUF258 Protein of un 97.8 9E-06 2.3E-10 55.8 1.6 24 2-25 35-58 (161)
88 TIGR01193 bacteriocin_ABC ABC- 97.8 2.1E-05 5.3E-10 53.6 3.5 78 1-89 499-587 (710)
89 TIGR02315 ABC_phnC phosphonate 97.8 1.8E-05 4.5E-10 54.0 3.0 57 2-68 28-94 (253)
90 TIGR02324 CP_lyasePhnL phospho 97.8 2E-05 5.1E-10 53.7 3.2 25 2-26 34-58 (224)
91 PTZ00088 adenylate kinase 1; P 97.8 2.1E-05 5.4E-10 53.6 3.3 29 4-32 2-30 (225)
92 PRK04195 replication factor C 97.8 0.00041 1E-08 45.8 9.8 119 3-134 41-172 (403)
93 COG0324 MiaA tRNA delta(2)-iso 97.8 1.3E-05 3.3E-10 54.8 2.1 54 2-55 3-65 (308)
94 KOG1384 consensus 97.7 2.1E-05 5.5E-10 53.5 3.2 124 2-139 7-162 (348)
95 KOG3079 consensus 97.7 5.4E-05 1.4E-09 51.1 5.2 160 1-175 7-192 (195)
96 pfam00406 ADK Adenylate kinase 97.7 1.5E-05 3.8E-10 54.5 2.2 117 7-137 1-124 (186)
97 TIGR02673 FtsE cell division A 97.7 2.4E-05 6.1E-10 53.2 3.1 27 2-28 28-55 (215)
98 cd01854 YjeQ_engC YjeQ/EngC. 97.7 1.2E-05 3.1E-10 55.0 1.6 25 2-26 161-185 (287)
99 cd03252 ABCC_Hemolysin The ABC 97.7 4.6E-05 1.2E-09 51.5 4.5 50 2-62 28-78 (237)
100 TIGR02203 MsbA_lipidA lipid A 97.7 2E-05 5E-10 53.8 2.5 25 2-30 388-412 (603)
101 TIGR02982 heterocyst_DevA ABC 97.7 2E-05 5.2E-10 53.7 2.5 55 2-68 31-87 (220)
102 PRK10790 putative multidrug tr 97.7 4.3E-05 1.1E-09 51.7 4.1 70 2-81 367-440 (593)
103 PRK01889 ribosome-associated G 97.7 2.4E-05 6.1E-10 53.2 2.6 25 2-26 194-218 (353)
104 TIGR01186 proV glycine betaine 97.7 3.1E-05 7.9E-10 52.6 3.2 45 2-58 19-65 (372)
105 TIGR00455 apsK adenylylsulfate 97.7 2.9E-05 7.3E-10 52.8 2.9 102 2-131 19-135 (187)
106 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.7 6.9E-05 1.8E-09 50.4 4.9 69 2-81 29-102 (238)
107 PRK13948 shikimate kinase; Pro 97.7 0.00014 3.7E-09 48.5 6.5 28 3-31 11-38 (182)
108 cd01672 TMPK Thymidine monopho 97.7 7.1E-05 1.8E-09 50.4 4.8 37 4-41 2-38 (200)
109 TIGR00041 DTMP_kinase thymidyl 97.7 7.1E-06 1.8E-10 56.4 -0.4 133 1-137 1-157 (211)
110 TIGR00235 udk uridine kinase; 97.7 0.00038 9.7E-09 46.0 8.4 162 4-176 12-217 (220)
111 cd02020 CMPK Cytidine monophos 97.6 0.00029 7.3E-09 46.7 7.6 27 4-31 1-27 (147)
112 cd03292 ABC_FtsE_transporter F 97.6 0.00012 3.1E-09 49.0 5.7 56 2-68 27-83 (214)
113 COG1126 GlnQ ABC-type polar am 97.6 5E-05 1.3E-09 51.3 3.3 23 2-24 28-50 (240)
114 TIGR00958 3a01208 antigen pept 97.6 5.3E-05 1.4E-09 51.1 3.3 75 2-90 559-642 (770)
115 PRK13973 thymidylate kinase; P 97.6 8.8E-05 2.3E-09 49.8 4.5 162 2-178 3-208 (216)
116 cd03256 ABC_PhnC_transporter A 97.6 0.00018 4.6E-09 47.9 5.8 51 2-63 27-78 (241)
117 cd03254 ABCC_Glucan_exporter_l 97.6 0.00011 2.9E-09 49.2 4.6 51 2-62 29-79 (229)
118 COG0703 AroK Shikimate kinase 97.6 0.00024 6E-09 47.2 6.3 146 1-180 1-169 (172)
119 PRK12338 hypothetical protein; 97.6 0.00025 6.3E-09 47.1 6.4 162 4-176 6-207 (320)
120 KOG3347 consensus 97.6 0.00073 1.9E-08 44.3 8.7 146 5-183 10-173 (176)
121 TIGR01842 type_I_sec_PrtD type 97.6 7.2E-05 1.8E-09 50.3 3.5 47 2-58 356-402 (556)
122 COG1162 Predicted GTPases [Gen 97.6 4E-05 1E-09 51.9 2.2 24 2-25 164-187 (301)
123 cd03248 ABCC_TAP TAP, the Tran 97.6 0.00011 2.9E-09 49.1 4.5 48 2-61 40-89 (226)
124 PRK11860 bifunctional 3-phosph 97.5 0.0019 4.9E-08 41.7 10.7 24 4-27 444-467 (662)
125 TIGR02857 CydD ABC transporter 97.5 6.5E-05 1.7E-09 50.6 3.2 55 2-61 378-434 (570)
126 cd03369 ABCC_NFT1 Domain 2 of 97.5 0.00015 3.8E-09 48.4 5.0 49 2-60 34-82 (207)
127 PRK10247 putative ABC transpor 97.5 0.00015 3.7E-09 48.5 4.9 48 2-61 33-82 (225)
128 cd03245 ABCC_bacteriocin_expor 97.5 0.00013 3.3E-09 48.8 4.6 51 2-62 30-80 (220)
129 PRK08118 topology modulation p 97.5 7.8E-05 2E-09 50.1 3.4 69 1-79 1-70 (167)
130 COG0237 CoaE Dephospho-CoA kin 97.5 0.00024 6.1E-09 47.2 5.9 159 1-180 1-196 (201)
131 cd00464 SK Shikimate kinase (S 97.5 0.00013 3.3E-09 48.8 4.5 26 5-31 2-27 (154)
132 PRK12337 2-phosphoglycerate ki 97.5 0.00035 8.9E-09 46.2 6.6 168 4-177 264-470 (492)
133 COG1136 SalX ABC-type antimicr 97.5 8.6E-05 2.2E-09 49.9 3.4 47 2-59 31-78 (226)
134 TIGR03415 ABC_choXWV_ATP choli 97.5 8.2E-05 2.1E-09 50.0 3.2 24 2-25 50-73 (382)
135 TIGR00972 3a0107s01c2 phosphat 97.5 8.1E-05 2.1E-09 50.0 3.1 74 2-87 27-113 (248)
136 PRK06761 hypothetical protein; 97.5 5.6E-05 1.4E-09 51.0 2.3 59 1-64 1-64 (281)
137 PRK13808 adenylate kinase; Pro 97.5 0.00018 4.7E-09 47.9 4.8 151 5-178 3-195 (297)
138 cd03246 ABCC_Protease_Secretio 97.5 0.00015 3.7E-09 48.5 4.3 47 2-60 28-76 (173)
139 cd03262 ABC_HisP_GlnQ_permease 97.5 9.6E-05 2.4E-09 49.6 3.3 24 2-25 26-49 (213)
140 TIGR00968 3a0106s01 sulfate AB 97.5 8.9E-05 2.3E-09 49.8 3.1 31 2-32 26-57 (241)
141 KOG0056 consensus 97.5 0.00017 4.3E-09 48.1 4.5 78 2-89 564-645 (790)
142 cd03258 ABC_MetN_methionine_tr 97.5 0.00022 5.6E-09 47.4 5.1 54 2-68 31-87 (233)
143 cd03244 ABCC_MRP_domain2 Domai 97.5 0.00019 4.9E-09 47.8 4.7 49 2-60 30-78 (221)
144 PRK10070 glycine betaine trans 97.5 9.9E-05 2.5E-09 49.5 3.2 24 2-25 54-77 (400)
145 TIGR03608 L_ocin_972_ABC putat 97.5 0.00011 2.8E-09 49.3 3.4 48 2-60 24-72 (206)
146 cd03289 ABCC_CFTR2 The CFTR su 97.5 0.00023 5.9E-09 47.3 5.0 49 2-61 30-78 (275)
147 cd03260 ABC_PstB_phosphate_tra 97.4 0.00011 2.9E-09 49.2 3.4 24 2-25 26-49 (227)
148 cd03288 ABCC_SUR2 The SUR doma 97.4 0.00021 5.2E-09 47.6 4.7 51 2-62 47-97 (257)
149 pfam08433 KTI12 Chromatin asso 97.4 0.00042 1.1E-08 45.7 6.1 111 4-138 1-120 (266)
150 KOG3209 consensus 97.4 4.3E-05 1.1E-09 51.7 1.1 53 29-83 63-115 (984)
151 cd03261 ABC_Org_Solvent_Resist 97.4 0.00012 3.1E-09 49.0 3.3 25 2-26 26-50 (235)
152 TIGR00960 3a0501s02 Type II (G 97.4 0.00012 3.1E-09 49.0 3.2 24 2-25 29-52 (216)
153 TIGR03269 met_CoM_red_A2 methy 97.4 0.00038 9.8E-09 46.0 5.8 23 2-24 26-48 (520)
154 PRK10584 putative ABC transpor 97.4 0.00028 7.1E-09 46.8 5.0 49 2-60 36-84 (228)
155 PRK10751 molybdopterin-guanine 97.4 0.00017 4.4E-09 48.1 3.9 50 1-51 1-53 (170)
156 TIGR03375 type_I_sec_LssB type 97.4 0.00019 5E-09 47.7 4.2 69 2-80 491-563 (694)
157 KOG1969 consensus 97.4 0.00053 1.3E-08 45.1 6.4 126 2-134 326-479 (877)
158 COG2019 AdkA Archaeal adenylat 97.4 0.00053 1.4E-08 45.1 6.3 157 1-175 1-187 (189)
159 cd03229 ABC_Class3 This class 97.4 0.00014 3.6E-09 48.6 3.3 24 2-25 26-49 (178)
160 cd03291 ABCC_CFTR1 The CFTR su 97.4 0.00021 5.3E-09 47.6 4.1 26 2-27 63-88 (282)
161 PRK13648 cbiO cobalt transport 97.4 0.00033 8.4E-09 46.3 5.2 24 2-25 35-58 (269)
162 TIGR01277 thiQ thiamine ABC tr 97.4 0.00027 6.8E-09 46.9 4.6 39 2-40 24-67 (213)
163 cd03257 ABC_NikE_OppD_transpor 97.4 0.0002 5.2E-09 47.6 4.0 25 2-26 31-55 (228)
164 PRK10419 nikE nickel transport 97.4 0.00044 1.1E-08 45.6 5.7 50 2-63 38-89 (266)
165 cd03300 ABC_PotA_N PotA is an 97.4 0.00015 3.9E-09 48.4 3.3 24 2-25 26-49 (232)
166 cd03290 ABCC_SUR1_N The SUR do 97.4 0.00022 5.5E-09 47.4 4.1 26 2-27 27-52 (218)
167 PRK11831 putative ABC transpor 97.4 0.00035 8.9E-09 46.2 5.1 25 2-26 34-58 (269)
168 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.00014 3.6E-09 48.5 3.1 50 2-62 50-100 (269)
169 cd03296 ABC_CysA_sulfate_impor 97.4 0.00015 3.9E-09 48.4 3.2 24 2-25 28-51 (239)
170 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00016 4E-09 48.3 3.2 24 2-25 24-47 (211)
171 COG4988 CydD ABC-type transpor 97.3 0.00033 8.5E-09 46.3 4.8 51 2-62 347-397 (559)
172 cd03301 ABC_MalK_N The N-termi 97.3 0.00018 4.6E-09 47.9 3.4 24 2-25 26-49 (213)
173 PRK10771 thiQ thiamine transpo 97.3 0.00031 8E-09 46.5 4.6 26 2-27 25-50 (233)
174 TIGR01192 chvA glucan exporter 97.3 0.00033 8.5E-09 46.3 4.7 73 2-95 361-435 (592)
175 cd03278 ABC_SMC_barmotin Barmo 97.3 0.00019 4.7E-09 47.8 3.4 21 2-23 23-43 (197)
176 COG1116 TauB ABC-type nitrate/ 97.3 0.00036 9.1E-09 46.1 4.8 65 2-77 29-93 (248)
177 cd03299 ABC_ModC_like Archeal 97.3 0.00018 4.5E-09 48.0 3.2 24 2-25 25-48 (235)
178 PRK10851 sulfate/thiosulfate t 97.3 0.00018 4.5E-09 48.0 3.2 24 2-25 28-51 (352)
179 COG3265 GntK Gluconate kinase 97.3 0.00036 9.1E-09 46.1 4.7 142 8-173 1-156 (161)
180 PRK13976 thymidylate kinase; P 97.3 0.00031 7.9E-09 46.5 4.4 41 4-44 2-43 (202)
181 cd03271 ABC_UvrA_II The excisi 97.3 0.0002 5.1E-09 47.6 3.5 22 2-23 21-42 (261)
182 cd03228 ABCC_MRP_Like The MRP 97.3 0.00034 8.7E-09 46.3 4.6 25 2-26 28-52 (171)
183 COG3839 MalK ABC-type sugar tr 97.3 0.0002 5.2E-09 47.6 3.4 23 2-24 29-51 (338)
184 cd03223 ABCD_peroxisomal_ALDP 97.3 0.00031 7.9E-09 46.5 4.2 26 2-27 27-52 (166)
185 cd03234 ABCG_White The White s 97.3 0.00022 5.7E-09 47.4 3.5 25 2-26 33-57 (226)
186 TIGR03499 FlhF flagellar biosy 97.3 0.00019 4.8E-09 47.8 3.1 23 3-25 195-217 (282)
187 cd03295 ABC_OpuCA_Osmoprotecti 97.3 0.0002 5.2E-09 47.6 3.2 24 2-25 27-50 (242)
188 PRK00098 ribosome-associated G 97.3 0.00017 4.4E-09 48.0 2.8 24 2-25 164-187 (298)
189 PRK11248 tauB taurine transpor 97.3 0.00037 9.3E-09 46.1 4.4 37 2-38 27-63 (255)
190 cd03297 ABC_ModC_molybdenum_tr 97.3 0.00021 5.4E-09 47.5 3.2 24 2-25 23-46 (214)
191 PRK11701 phnK phosphonates tra 97.3 0.00042 1.1E-08 45.7 4.7 35 2-37 32-67 (258)
192 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.00021 5.4E-09 47.5 3.2 25 2-26 30-54 (220)
193 pfam06414 Zeta_toxin Zeta toxi 97.3 0.00016 4E-09 48.3 2.5 119 3-135 13-138 (191)
194 TIGR00017 cmk cytidylate kinas 97.3 0.00029 7.3E-09 46.7 3.8 60 1-66 1-68 (223)
195 PRK11264 putative amino-acid A 97.3 0.00024 6.1E-09 47.2 3.4 24 2-25 27-50 (248)
196 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00025 6.4E-09 47.1 3.5 25 2-26 26-50 (205)
197 CHL00131 ycf16 sulfate ABC tra 97.3 0.00023 5.8E-09 47.3 3.3 23 2-24 32-54 (252)
198 TIGR00382 clpX ATP-dependent C 97.3 0.00024 6.2E-09 47.2 3.3 91 5-106 155-249 (452)
199 PRK11629 lolD lipoprotein tran 97.3 0.00041 1E-08 45.8 4.5 24 2-25 35-58 (233)
200 KOG0058 consensus 97.3 0.00031 7.8E-09 46.5 3.8 77 2-89 494-575 (716)
201 TIGR01360 aden_kin_iso1 adenyl 97.3 0.0016 4E-08 42.2 7.4 155 3-174 4-188 (191)
202 PRK13635 cbiO cobalt transport 97.3 0.00027 6.8E-09 46.9 3.4 26 2-27 33-58 (279)
203 cd03233 ABC_PDR_domain1 The pl 97.2 0.00028 7.2E-09 46.8 3.5 26 2-27 33-58 (202)
204 PRK09580 sufC cysteine desulfu 97.2 0.00027 7E-09 46.8 3.4 24 2-25 27-50 (248)
205 cd04163 Era Era subfamily. Er 97.2 0.0002 5.1E-09 47.7 2.7 41 4-44 5-45 (168)
206 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.00025 6.4E-09 47.1 3.2 25 2-26 25-49 (246)
207 PRK13543 cytochrome c biogenes 97.2 0.00047 1.2E-08 45.4 4.6 26 2-27 37-62 (214)
208 TIGR00630 uvra excinuclease AB 97.2 0.00025 6.4E-09 47.1 3.2 22 1-22 664-685 (956)
209 cd03231 ABC_CcmA_heme_exporter 97.2 0.00046 1.2E-08 45.4 4.5 26 2-27 26-51 (201)
210 cd03250 ABCC_MRP_domain1 Domai 97.2 0.00026 6.7E-09 46.9 3.3 25 2-26 31-55 (204)
211 COG1428 Deoxynucleoside kinase 97.2 0.0013 3.2E-08 42.8 6.7 26 2-27 4-29 (216)
212 cd04164 trmE TrmE (MnmE, ThdF, 97.2 0.00017 4.3E-09 48.1 2.2 42 5-46 4-45 (157)
213 PRK11000 maltose/maltodextrin 97.2 0.00026 6.7E-09 46.9 3.2 24 2-25 29-52 (369)
214 COG4639 Predicted kinase [Gene 97.2 0.00047 1.2E-08 45.4 4.4 119 1-147 1-129 (168)
215 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00047 1.2E-08 45.4 4.4 25 2-26 30-54 (218)
216 TIGR02639 ClpA ATP-dependent C 97.2 0.00026 6.6E-09 47.0 3.1 27 4-31 529-555 (774)
217 PRK13542 consensus 97.2 0.00056 1.4E-08 45.0 4.8 43 1-43 43-85 (224)
218 PRK13540 cytochrome c biogenes 97.2 0.00049 1.2E-08 45.3 4.4 25 2-26 27-51 (200)
219 cd03247 ABCC_cytochrome_bd The 97.2 0.00033 8.4E-09 46.4 3.5 25 2-26 28-52 (178)
220 PRK12288 ribosome-associated G 97.2 0.0002 5E-09 47.7 2.4 24 2-25 207-230 (344)
221 PRK11432 fbpC ferric transport 97.2 0.00025 6.3E-09 47.1 2.9 24 2-25 32-55 (351)
222 COG1763 MobB Molybdopterin-gua 97.2 0.00038 9.7E-09 46.0 3.8 50 1-51 1-53 (161)
223 PRK13634 cbiO cobalt transport 97.2 0.00026 6.7E-09 47.0 2.9 25 2-26 20-44 (276)
224 PRK11153 metN DL-methionine tr 97.2 0.00087 2.2E-08 43.8 5.6 55 2-68 31-87 (343)
225 PRK11650 ugpC glycerol-3-phosp 97.2 0.00029 7.3E-09 46.7 3.1 24 2-25 30-53 (358)
226 cd03214 ABC_Iron-Siderophores_ 97.2 0.00051 1.3E-08 45.2 4.4 26 2-27 25-50 (180)
227 cd03235 ABC_Metallic_Cations A 97.2 0.00043 1.1E-08 45.7 4.0 26 2-27 25-50 (213)
228 PRK13547 hmuV hemin importer A 97.2 0.00033 8.5E-09 46.3 3.4 26 2-27 27-52 (273)
229 KOG0061 consensus 97.2 0.00037 9.4E-09 46.0 3.6 42 2-43 56-100 (613)
230 PRK09452 potA putrescine/sperm 97.2 0.00032 8.1E-09 46.4 3.2 24 2-25 43-66 (378)
231 TIGR03258 PhnT 2-aminoethylpho 97.2 0.00032 8.1E-09 46.4 3.2 24 2-25 31-54 (362)
232 PRK10744 phosphate transporter 97.2 0.00035 9E-09 46.2 3.4 24 2-25 36-59 (257)
233 PRK11124 artP arginine transpo 97.2 0.00035 8.9E-09 46.2 3.4 23 2-24 28-50 (242)
234 PRK09493 glnQ glutamine ABC tr 97.2 0.00038 9.7E-09 46.0 3.6 25 2-26 27-51 (240)
235 PRK10619 histidine/lysine/argi 97.2 0.00035 8.9E-09 46.2 3.3 24 2-25 31-54 (257)
236 COG2274 SunT ABC-type bacterio 97.2 0.00068 1.7E-08 44.4 4.8 64 2-76 499-566 (709)
237 PRK09984 phosphonate/organopho 97.2 0.00036 9.1E-09 46.1 3.3 24 2-25 30-53 (262)
238 cd03236 ABC_RNaseL_inhibitor_d 97.2 0.00036 9.1E-09 46.1 3.3 24 2-25 26-49 (255)
239 PRK11247 ssuB aliphatic sulfon 97.2 0.00032 8.2E-09 46.4 3.1 27 2-28 38-65 (257)
240 cd02030 NDUO42 NADH:Ubiquinone 97.2 0.00088 2.2E-08 43.8 5.3 24 4-27 1-24 (219)
241 PRK13642 cbiO cobalt transport 97.2 0.00048 1.2E-08 45.3 4.0 26 2-27 33-58 (277)
242 PRK13631 cbiO cobalt transport 97.2 0.00038 9.7E-09 46.0 3.4 25 2-26 52-76 (320)
243 pfam01121 CoaE Dephospho-CoA k 97.2 0.00037 9.6E-09 46.0 3.4 48 116-164 124-178 (179)
244 COG3842 PotA ABC-type spermidi 97.2 0.00039 9.9E-09 45.9 3.4 39 2-40 31-74 (352)
245 PRK13548 hmuV hemin importer A 97.1 0.00057 1.4E-08 44.9 4.2 25 2-26 28-52 (257)
246 COG3840 ThiQ ABC-type thiamine 97.1 0.00073 1.9E-08 44.3 4.8 41 2-42 25-70 (231)
247 PRK13544 consensus 97.1 0.00057 1.5E-08 44.9 4.2 26 2-27 27-52 (208)
248 cd01673 dNK Deoxyribonucleosid 97.1 0.00052 1.3E-08 45.1 4.0 23 4-26 1-23 (193)
249 PRK10575 iron-hydroxamate tran 97.1 0.00059 1.5E-08 44.8 4.3 25 2-26 37-61 (265)
250 cd03213 ABCG_EPDR ABCG transpo 97.1 0.00038 9.6E-09 46.0 3.3 23 2-24 35-57 (194)
251 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.00038 9.7E-09 46.0 3.3 24 2-25 26-49 (200)
252 PRK05703 flhF flagellar biosyn 97.1 0.00034 8.7E-09 46.3 3.0 25 2-26 210-234 (412)
253 TIGR01351 adk adenylate kinase 97.1 0.00037 9.5E-09 46.0 3.2 28 5-32 2-29 (232)
254 PRK03003 engA GTP-binding prot 97.1 0.00011 2.8E-09 49.2 0.5 90 4-102 213-304 (474)
255 COG4619 ABC-type uncharacteriz 97.1 0.00083 2.1E-08 43.9 5.0 51 2-63 29-80 (223)
256 PRK09536 btuD corrinoid ABC tr 97.1 0.00079 2E-08 44.0 4.8 26 2-27 28-53 (409)
257 PRK13646 cbiO cobalt transport 97.1 0.00059 1.5E-08 44.8 4.1 25 2-26 33-57 (286)
258 TIGR03265 PhnT2 putative 2-ami 97.1 0.0004 1E-08 45.9 3.2 24 2-25 30-53 (353)
259 PRK13633 cobalt transporter AT 97.1 0.00042 1.1E-08 45.7 3.3 24 2-25 37-60 (281)
260 PRK10908 cell division protein 97.1 0.00065 1.7E-08 44.5 4.2 24 2-25 28-51 (222)
261 PRK13637 cbiO cobalt transport 97.1 0.00037 9.3E-09 46.1 2.9 25 2-26 33-57 (287)
262 cd03216 ABC_Carb_Monos_I This 97.1 0.00085 2.2E-08 43.8 4.8 46 2-58 26-72 (163)
263 cd03232 ABC_PDR_domain2 The pl 97.1 0.00046 1.2E-08 45.5 3.4 24 2-25 33-56 (192)
264 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00048 1.2E-08 45.3 3.5 24 2-25 27-50 (211)
265 PRK12269 bifunctional cytidyla 97.1 0.00074 1.9E-08 44.2 4.4 27 1-27 32-59 (863)
266 PRK13538 cytochrome c biogenes 97.1 0.00077 2E-08 44.1 4.5 25 2-26 27-51 (204)
267 cd03238 ABC_UvrA The excision 97.1 0.00054 1.4E-08 45.1 3.7 27 2-28 21-47 (176)
268 PRK10418 nikD nickel transport 97.1 0.00045 1.1E-08 45.5 3.2 26 2-27 29-54 (254)
269 cd03240 ABC_Rad50 The catalyti 97.1 0.00051 1.3E-08 45.2 3.5 24 2-25 22-45 (204)
270 PRK13632 cbiO cobalt transport 97.1 0.00064 1.6E-08 44.6 4.0 25 2-26 36-60 (273)
271 PRK13640 cbiO cobalt transport 97.1 0.00046 1.2E-08 45.5 3.2 24 2-25 34-57 (283)
272 PRK09700 D-allose transporter 97.1 0.0011 2.7E-08 43.3 5.0 26 2-27 31-56 (510)
273 TIGR02868 CydC ABC transporter 97.1 0.00045 1.2E-08 45.5 3.0 50 2-63 387-438 (566)
274 PRK11308 dppF dipeptide transp 97.1 0.0011 2.9E-08 43.1 5.0 48 2-61 41-90 (327)
275 PRK11231 fecE iron-dicitrate t 97.1 0.00081 2.1E-08 44.0 4.3 25 2-26 28-52 (255)
276 PRK13652 cbiO cobalt transport 97.1 0.00049 1.2E-08 45.3 3.1 25 2-26 30-54 (277)
277 PRK11607 potG putrescine trans 97.1 0.00047 1.2E-08 45.4 3.1 24 2-25 45-68 (377)
278 PRK13650 cbiO cobalt transport 97.1 0.0005 1.3E-08 45.2 3.2 25 2-26 30-54 (276)
279 PRK13651 cobalt transporter AT 97.0 0.00056 1.4E-08 44.9 3.4 24 2-25 33-56 (304)
280 pfam10662 PduV-EutP Ethanolami 97.0 0.00043 1.1E-08 45.6 2.8 24 1-25 1-24 (143)
281 PRK13641 cbiO cobalt transport 97.0 0.00045 1.1E-08 45.5 2.9 25 2-26 33-57 (286)
282 PRK13647 cbiO cobalt transport 97.0 0.00089 2.3E-08 43.7 4.4 25 2-26 31-55 (273)
283 COG3638 ABC-type phosphate/pho 97.0 0.00054 1.4E-08 45.1 3.2 23 2-24 30-52 (258)
284 cd03224 ABC_TM1139_LivF_branch 97.0 0.00098 2.5E-08 43.5 4.5 26 2-27 26-51 (222)
285 PRK13644 cbiO cobalt transport 97.0 0.00058 1.5E-08 44.9 3.4 25 2-26 28-52 (274)
286 PRK03695 vitamin B12-transport 97.0 0.00062 1.6E-08 44.7 3.5 26 2-27 23-48 (245)
287 pfam00437 GSPII_E Type II/IV s 97.0 0.00068 1.7E-08 44.4 3.7 115 2-139 139-260 (283)
288 PRK13645 cbiO cobalt transport 97.0 0.00054 1.4E-08 45.0 3.2 24 2-25 37-60 (289)
289 COG1127 Ttg2A ABC-type transpo 97.0 0.0012 3.1E-08 42.9 4.9 51 2-64 34-86 (263)
290 PRK05342 clpX ATP-dependent pr 97.0 0.00091 2.3E-08 43.7 4.3 33 4-37 111-143 (411)
291 PRK11614 livF leucine/isoleuci 97.0 0.0011 2.7E-08 43.3 4.5 25 2-26 31-55 (237)
292 PRK09544 znuC high-affinity zi 97.0 0.00066 1.7E-08 44.5 3.5 26 2-27 30-55 (251)
293 PRK12402 replication factor C 97.0 0.0022 5.5E-08 41.4 6.1 22 5-26 39-60 (337)
294 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00068 1.7E-08 44.4 3.5 24 2-25 25-48 (177)
295 PRK10787 DNA-binding ATP-depen 97.0 0.0011 2.7E-08 43.3 4.4 27 2-28 349-375 (784)
296 PRK10261 glutathione transport 97.0 0.0013 3.3E-08 42.8 4.8 27 2-28 42-68 (623)
297 cd01894 EngA1 EngA1 subfamily. 97.0 0.00023 5.8E-09 47.3 0.9 48 7-54 2-51 (157)
298 TIGR01978 sufC FeS assembly AT 97.0 0.0013 3.4E-08 42.7 4.9 58 2-70 26-83 (248)
299 PRK10895 putative ABC transpor 97.0 0.00073 1.9E-08 44.3 3.4 26 2-27 29-54 (241)
300 PRK13768 GTPase; Provisional 97.0 0.00084 2.1E-08 43.9 3.7 27 1-27 1-27 (253)
301 PRK11022 dppD dipeptide transp 97.0 0.0012 3E-08 43.0 4.5 53 2-62 33-87 (327)
302 PRK10535 macrolide transporter 97.0 0.0017 4.4E-08 42.0 5.3 23 2-24 34-56 (648)
303 cd03259 ABC_Carb_Solutes_like 97.0 0.0011 2.9E-08 43.1 4.4 26 2-27 26-51 (213)
304 pfam01583 APS_kinase Adenylyls 97.0 0.00081 2.1E-08 44.0 3.6 25 2-26 2-26 (157)
305 PRK13539 cytochrome c biogenes 97.0 0.0013 3.2E-08 42.8 4.6 26 1-26 27-52 (206)
306 KOG0057 consensus 97.0 0.00078 2E-08 44.1 3.5 78 2-91 378-460 (591)
307 TIGR00174 miaA tRNA delta(2)-i 97.0 0.00036 9.1E-09 46.1 1.7 83 4-98 1-94 (307)
308 PRK10938 putative molybdenum t 97.0 0.00073 1.9E-08 44.2 3.3 26 2-27 29-54 (490)
309 PRK13639 cbiO cobalt transport 97.0 0.00073 1.9E-08 44.3 3.3 25 2-26 28-52 (275)
310 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0012 3E-08 43.0 4.3 25 2-26 25-49 (157)
311 cd01130 VirB11-like_ATPase Typ 96.9 0.00099 2.5E-08 43.4 3.9 135 2-159 25-171 (186)
312 PRK13549 xylose transporter AT 96.9 0.00083 2.1E-08 43.9 3.5 26 2-27 31-56 (513)
313 PRK13638 cbiO cobalt transport 96.9 0.0013 3.3E-08 42.7 4.5 25 2-26 27-51 (271)
314 PRK11300 livG leucine/isoleuci 96.9 0.0013 3.4E-08 42.7 4.5 26 2-27 31-56 (255)
315 cd01897 NOG NOG1 is a nucleola 96.9 0.00067 1.7E-08 44.5 2.9 50 4-54 2-53 (168)
316 TIGR01187 potA polyamine ABC t 96.9 0.00054 1.4E-08 45.1 2.5 40 7-46 1-45 (331)
317 PRK13541 cytochrome c biogenes 96.9 0.0014 3.4E-08 42.6 4.5 25 2-26 26-50 (195)
318 PRK11144 modC molybdate transp 96.9 0.0008 2E-08 44.0 3.3 24 2-25 24-47 (352)
319 PRK10246 exonuclease subunit S 96.9 0.00085 2.2E-08 43.8 3.4 23 2-24 30-52 (1047)
320 PRK10253 iron-enterobactin tra 96.9 0.0011 2.9E-08 43.1 4.0 25 2-26 33-57 (265)
321 PRK13643 cbiO cobalt transport 96.9 0.00076 1.9E-08 44.2 3.2 25 2-26 32-56 (288)
322 KOG2004 consensus 96.9 0.0011 2.7E-08 43.3 3.9 44 2-48 438-483 (906)
323 PTZ00265 multidrug resistance 96.9 0.0013 3.4E-08 42.7 4.4 21 2-22 411-431 (1467)
324 PRK13636 cbiO cobalt transport 96.9 0.00085 2.2E-08 43.9 3.4 25 2-26 32-56 (285)
325 PRK13649 cbiO cobalt transport 96.9 0.00079 2E-08 44.0 3.2 25 2-26 33-57 (280)
326 cd01895 EngA2 EngA2 subfamily. 96.9 0.00044 1.1E-08 45.6 1.9 50 5-54 5-56 (174)
327 COG0466 Lon ATP-dependent Lon 96.9 0.0013 3.4E-08 42.7 4.3 84 2-89 350-445 (782)
328 PRK10762 D-ribose transporter 96.9 0.0015 3.7E-08 42.4 4.5 25 2-26 30-54 (501)
329 COG1125 OpuBA ABC-type proline 96.9 0.0008 2E-08 44.0 3.2 21 2-22 27-47 (309)
330 TIGR02788 VirB11 P-type DNA tr 96.9 0.0012 3.1E-08 42.9 4.0 33 2-34 158-190 (328)
331 PRK00440 rfc replication facto 96.9 0.0023 6E-08 41.2 5.4 22 5-26 40-61 (318)
332 cd03263 ABC_subfamily_A The AB 96.9 0.00095 2.4E-08 43.6 3.4 25 2-26 28-52 (220)
333 TIGR00630 uvra excinuclease AB 96.9 0.00056 1.4E-08 44.9 2.2 18 2-19 22-39 (956)
334 PTZ00265 multidrug resistance 96.9 0.0014 3.6E-08 42.5 4.2 26 2-27 1195-1220(1467)
335 PRK09087 hypothetical protein; 96.9 0.012 3.1E-07 36.9 8.9 27 3-29 45-71 (226)
336 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0017 4.3E-08 42.1 4.5 25 2-26 26-50 (144)
337 TIGR03410 urea_trans_UrtE urea 96.9 0.0011 2.8E-08 43.2 3.5 25 2-26 26-50 (230)
338 pfam03308 ArgK ArgK protein. T 96.8 0.028 7.1E-07 34.7 10.7 123 3-136 30-164 (267)
339 PRK05564 DNA polymerase III su 96.8 0.0093 2.4E-07 37.6 8.2 25 1-25 25-49 (313)
340 PRK09518 bifunctional cytidyla 96.8 0.00033 8.5E-09 46.3 0.8 26 2-27 4-29 (714)
341 PRK09473 oppD oligopeptide tra 96.8 0.001 2.6E-08 43.4 3.3 50 2-61 42-94 (330)
342 KOG3220 consensus 96.8 0.0039 1E-07 39.8 6.2 162 4-180 3-198 (225)
343 PRK06995 flhF flagellar biosyn 96.8 0.00091 2.3E-08 43.7 2.9 25 2-26 176-200 (404)
344 PRK00349 uvrA excinuclease ABC 96.8 0.00089 2.3E-08 43.7 2.8 18 2-19 26-43 (944)
345 PRK10982 galactose/methyl gala 96.8 0.002 5E-08 41.6 4.5 26 2-27 24-49 (491)
346 PRK05291 trmE tRNA modificatio 96.8 0.0011 2.8E-08 43.2 3.2 53 2-54 216-270 (445)
347 cd01896 DRG The developmentall 96.8 0.00073 1.9E-08 44.2 2.3 41 5-46 3-43 (233)
348 PRK13546 teichoic acids export 96.8 0.0012 3.1E-08 42.9 3.3 25 2-26 50-74 (264)
349 PRK00089 era GTP-binding prote 96.8 0.00079 2E-08 44.0 2.3 41 4-44 10-50 (296)
350 PRK06217 hypothetical protein; 96.8 0.0013 3.4E-08 42.7 3.4 25 1-26 1-25 (185)
351 PRK08058 DNA polymerase III su 96.8 0.005 1.3E-07 39.2 6.3 25 1-25 27-51 (329)
352 COG4618 ArpD ABC-type protease 96.8 0.0017 4.4E-08 42.0 3.9 49 2-60 362-410 (580)
353 cd03215 ABC_Carb_Monos_II This 96.8 0.0011 2.8E-08 43.1 3.0 25 2-26 26-50 (182)
354 COG2884 FtsE Predicted ATPase 96.8 0.0013 3.4E-08 42.7 3.3 24 2-25 28-51 (223)
355 cd01876 YihA_EngB The YihA (En 96.8 0.0011 2.7E-08 43.3 2.8 35 5-40 2-38 (170)
356 cd03269 ABC_putative_ATPase Th 96.8 0.00033 8.5E-09 46.3 0.3 26 2-27 26-51 (210)
357 PRK13851 type IV secretion sys 96.7 0.0018 4.7E-08 41.8 4.0 39 2-40 162-201 (343)
358 COG0529 CysC Adenylylsulfate k 96.7 0.0015 3.8E-08 42.4 3.4 108 2-131 23-137 (197)
359 PRK11288 araG L-arabinose tran 96.7 0.0025 6.4E-08 41.0 4.6 24 2-25 30-53 (501)
360 cd00880 Era_like Era (E. coli 96.7 0.00052 1.3E-08 45.2 1.1 40 7-46 1-40 (163)
361 TIGR00618 sbcc exonuclease Sbc 96.7 0.0012 3.1E-08 42.9 3.0 21 3-23 31-51 (1063)
362 COG0396 sufC Cysteine desulfur 96.7 0.0032 8.2E-08 40.4 5.1 68 2-83 30-99 (251)
363 cd01882 BMS1 Bms1. Bms1 is an 96.7 0.0015 3.8E-08 42.4 3.4 25 4-28 41-65 (225)
364 cd03267 ABC_NatA_like Similar 96.7 0.0014 3.6E-08 42.5 3.3 25 2-26 47-71 (236)
365 PRK11147 ABC transporter ATPas 96.7 0.0022 5.5E-08 41.4 4.2 26 2-27 29-54 (632)
366 COG1618 Predicted nucleotide k 96.7 0.0033 8.4E-08 40.3 5.1 42 1-43 4-47 (179)
367 COG1131 CcmA ABC-type multidru 96.7 0.0026 6.7E-08 40.9 4.6 25 2-26 31-55 (293)
368 TIGR00176 mobB molybdopterin-g 96.7 0.00073 1.9E-08 44.3 1.7 45 4-49 1-51 (165)
369 PRK13900 type IV secretion sys 96.7 0.002 5.2E-08 41.6 4.0 37 3-39 161-198 (332)
370 PRK12724 flagellar biosynthesi 96.7 0.0015 3.8E-08 42.4 3.2 24 3-26 224-247 (432)
371 pfam03266 DUF265 Protein of un 96.7 0.0014 3.5E-08 42.6 3.0 44 5-49 2-48 (168)
372 TIGR03015 pepcterm_ATPase puta 96.7 0.0034 8.6E-08 40.2 5.0 25 3-27 44-68 (269)
373 PRK10636 putative ABC transpor 96.7 0.0022 5.6E-08 41.3 4.0 26 2-27 27-52 (638)
374 PRK00093 engA GTP-binding prot 96.7 0.00041 1E-08 45.8 0.2 54 5-58 175-230 (438)
375 TIGR00602 rad24 checkpoint pro 96.7 0.0015 3.9E-08 42.3 3.1 25 2-26 118-142 (670)
376 KOG0744 consensus 96.7 0.0015 3.9E-08 42.3 3.2 25 2-26 177-201 (423)
377 cd03218 ABC_YhbG The ABC trans 96.7 0.0017 4.4E-08 42.0 3.4 25 2-26 26-50 (232)
378 cd01878 HflX HflX subfamily. 96.7 0.002 5E-08 41.6 3.7 39 4-43 43-81 (204)
379 COG1118 CysA ABC-type sulfate/ 96.7 0.0017 4.2E-08 42.1 3.3 29 2-30 28-57 (345)
380 cd02027 APSK Adenosine 5'-phos 96.7 0.0015 3.7E-08 42.4 3.0 23 4-26 1-23 (149)
381 cd03270 ABC_UvrA_I The excisio 96.7 0.0014 3.7E-08 42.5 3.0 21 2-22 21-41 (226)
382 COG1120 FepC ABC-type cobalami 96.7 0.0018 4.6E-08 41.9 3.4 24 2-25 28-51 (258)
383 PRK11147 ABC transporter ATPas 96.7 0.0024 6.2E-08 41.1 4.1 26 2-27 345-370 (632)
384 smart00382 AAA ATPases associa 96.7 0.002 5.1E-08 41.6 3.7 28 1-28 1-28 (148)
385 TIGR02770 nickel_nikD nickel i 96.7 0.0034 8.6E-08 40.2 4.8 54 1-63 11-67 (239)
386 PRK12723 flagellar biosynthesi 96.7 0.0016 4E-08 42.3 3.1 25 2-26 174-198 (388)
387 pfam03976 PPK2 Polyphosphate k 96.7 0.015 3.7E-07 36.4 8.1 123 4-138 33-159 (229)
388 TIGR00956 3a01205 Pleiotropic 96.6 0.0011 2.8E-08 43.2 2.3 24 2-25 853-876 (1466)
389 cd02019 NK Nucleoside/nucleoti 96.6 0.0023 5.9E-08 41.2 3.9 23 4-26 1-23 (69)
390 pfam03215 Rad17 Rad17 cell cyc 96.6 0.002 5.2E-08 41.6 3.6 29 2-31 45-73 (490)
391 PRK13342 recombination factor 96.6 0.0029 7.5E-08 40.6 4.4 33 5-37 40-72 (417)
392 PRK00635 excinuclease ABC subu 96.6 0.0014 3.6E-08 42.5 2.7 18 2-19 961-978 (1809)
393 PRK13477 bifunctional pantoate 96.6 0.0026 6.7E-08 40.9 4.1 26 2-27 284-309 (512)
394 PRK13341 recombination factor 96.6 0.0032 8.1E-08 40.4 4.5 33 5-37 55-87 (726)
395 PTZ00243 ABC transporter; Prov 96.6 0.0033 8.3E-08 40.3 4.5 32 2-33 686-717 (1560)
396 COG1160 Predicted GTPases [Gen 96.6 0.0013 3.3E-08 42.8 2.4 88 5-101 181-270 (444)
397 TIGR03411 urea_trans_UrtD urea 96.6 0.0021 5.3E-08 41.5 3.4 25 2-26 28-52 (242)
398 COG1124 DppF ABC-type dipeptid 96.6 0.002 5.2E-08 41.6 3.4 24 2-25 33-56 (252)
399 cd00009 AAA The AAA+ (ATPases 96.6 0.0031 7.8E-08 40.5 4.2 24 3-26 20-43 (151)
400 pfam02421 FeoB_N Ferrous iron 96.6 0.0016 4.1E-08 42.2 2.7 49 5-54 2-52 (188)
401 COG1419 FlhF Flagellar GTP-bin 96.6 0.002 5E-08 41.6 3.1 26 2-27 203-228 (407)
402 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0034 8.6E-08 40.2 4.3 25 2-26 26-50 (173)
403 cd03219 ABC_Mj1267_LivG_branch 96.5 0.0023 5.9E-08 41.2 3.4 25 2-26 26-50 (236)
404 PRK13695 putative NTPase; Prov 96.5 0.0025 6.5E-08 41.0 3.6 45 4-49 5-52 (174)
405 TIGR03598 GTPase_YsxC ribosome 96.5 0.0022 5.5E-08 41.4 3.2 36 4-40 20-57 (179)
406 TIGR02211 LolD_lipo_ex lipopro 96.5 0.0019 4.9E-08 41.7 2.9 152 2-184 31-194 (221)
407 PRK06851 hypothetical protein; 96.5 0.0023 5.9E-08 41.2 3.3 25 2-26 31-55 (368)
408 COG4175 ProV ABC-type proline/ 96.5 0.0021 5.4E-08 41.5 3.0 78 2-89 54-140 (386)
409 cd01898 Obg Obg subfamily. Th 96.5 0.0023 5.8E-08 41.3 3.2 41 5-46 3-43 (170)
410 COG0283 Cmk Cytidylate kinase 96.5 0.0034 8.6E-08 40.2 4.1 28 1-28 1-30 (222)
411 cd04120 Rab12 Rab12 subfamily. 96.5 0.014 3.7E-07 36.4 7.3 148 5-177 3-166 (202)
412 cd02022 DPCK Dephospho-coenzym 96.5 0.0031 7.9E-08 40.4 3.9 46 116-162 124-175 (179)
413 cd03116 MobB Molybdenum is an 96.5 0.0026 6.7E-08 40.9 3.5 46 3-49 2-50 (159)
414 TIGR02533 type_II_gspE general 96.5 0.002 5.1E-08 41.6 2.9 104 4-135 247-383 (495)
415 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0027 6.9E-08 40.8 3.5 26 2-27 78-103 (361)
416 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.5 0.0028 7E-08 40.8 3.5 26 2-27 48-73 (224)
417 pfam07728 AAA_5 AAA domain (dy 96.5 0.0053 1.3E-07 39.1 4.9 23 5-27 2-24 (139)
418 PRK11819 putative ABC transpor 96.5 0.0036 9.2E-08 40.1 4.0 25 2-26 33-57 (556)
419 COG1117 PstB ABC-type phosphat 96.5 0.0025 6.3E-08 41.0 3.2 23 2-24 33-55 (253)
420 KOG1970 consensus 96.5 0.0012 3.1E-08 42.9 1.5 78 2-82 110-189 (634)
421 cd02025 PanK Pantothenate kina 96.5 0.0022 5.7E-08 41.3 2.9 22 4-25 1-22 (220)
422 cd03264 ABC_drug_resistance_li 96.5 0.0026 6.6E-08 40.9 3.2 24 2-26 26-49 (211)
423 COG1123 ATPase components of v 96.4 0.003 7.6E-08 40.5 3.4 24 2-25 317-340 (539)
424 KOG1191 consensus 96.4 0.0023 5.7E-08 41.3 2.7 50 4-53 270-321 (531)
425 COG0486 ThdF Predicted GTPase 96.4 0.0025 6.3E-08 41.0 2.9 47 3-49 218-266 (454)
426 PRK10636 putative ABC transpor 96.4 0.0026 6.6E-08 40.9 3.1 25 2-26 338-362 (638)
427 PRK09183 transposase/IS protei 96.4 0.0019 4.9E-08 41.7 2.4 35 3-37 102-136 (258)
428 COG4107 PhnK ABC-type phosphon 96.4 0.0067 1.7E-07 38.4 5.1 66 2-76 32-97 (258)
429 PRK03918 chromosome segregatio 96.4 0.0027 7E-08 40.8 3.1 21 3-23 24-44 (882)
430 KOG0055 consensus 96.4 0.0038 9.7E-08 39.9 3.8 22 2-23 379-400 (1228)
431 COG0419 SbcC ATPase involved i 96.4 0.0034 8.5E-08 40.2 3.5 22 2-23 25-46 (908)
432 TIGR01420 pilT_fam twitching m 96.4 0.0027 7E-08 40.8 3.1 43 4-57 129-175 (350)
433 PRK10938 putative molybdenum t 96.4 0.0052 1.3E-07 39.1 4.5 26 2-27 286-311 (490)
434 PRK00093 engA GTP-binding prot 96.4 0.00046 1.2E-08 45.4 -1.0 51 3-53 2-54 (438)
435 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0035 8.9E-08 40.1 3.5 26 2-27 26-51 (208)
436 cd01131 PilT Pilus retraction 96.4 0.0037 9.5E-08 40.0 3.6 114 4-136 3-122 (198)
437 cd03266 ABC_NatA_sodium_export 96.4 0.0037 9.5E-08 40.0 3.6 25 2-26 31-55 (218)
438 PRK09435 arginine/ornithine tr 96.4 0.054 1.4E-06 32.9 9.5 117 3-128 50-178 (325)
439 cd04111 Rab39 Rab39 subfamily. 96.4 0.033 8.5E-07 34.2 8.4 152 5-182 5-174 (211)
440 PRK00454 engB GTPase EngB; Rev 96.4 0.0024 6E-08 41.2 2.5 35 4-39 26-62 (196)
441 cd03265 ABC_DrrA DrrA is the A 96.3 0.0036 9.2E-08 40.1 3.3 25 2-26 26-50 (220)
442 TIGR03522 GldA_ABC_ATP gliding 96.3 0.0038 9.6E-08 40.0 3.4 25 2-26 28-52 (301)
443 PRK11819 putative ABC transpor 96.3 0.0036 9.3E-08 40.0 3.3 26 2-27 350-375 (556)
444 cd03227 ABC_Class2 ABC-type Cl 96.3 0.0039 9.9E-08 39.9 3.4 22 2-23 21-42 (162)
445 PRK05506 bifunctional sulfate 96.3 0.0041 1E-07 39.7 3.5 147 2-179 443-611 (613)
446 KOG0055 consensus 96.3 0.0047 1.2E-07 39.4 3.8 23 2-25 1016-1038(1228)
447 TIGR00956 3a01205 Pleiotropic 96.3 0.0039 9.9E-08 39.9 3.4 55 2-68 88-142 (1466)
448 TIGR03594 GTPase_EngA ribosome 96.3 0.0021 5.5E-08 41.4 1.9 55 5-59 175-231 (429)
449 TIGR02782 TrbB_P P-type conjug 96.3 0.0036 9.3E-08 40.0 3.0 47 5-51 142-193 (315)
450 cd04160 Arfrp1 Arfrp1 subfamil 96.2 0.0038 9.7E-08 39.9 3.1 23 5-27 2-24 (167)
451 COG1219 ClpX ATP-dependent pro 96.2 0.007 1.8E-07 38.3 4.4 92 5-106 100-194 (408)
452 pfam01202 SKI Shikimate kinase 96.2 0.015 3.8E-07 36.3 6.1 56 114-170 85-153 (158)
453 PRK13537 lipooligosaccharide t 96.2 0.0045 1.2E-07 39.5 3.4 27 2-28 31-58 (304)
454 PRK04213 GTP-binding protein; 96.2 0.0027 6.9E-08 40.8 2.2 36 4-40 3-38 (195)
455 TIGR03594 GTPase_EngA ribosome 96.2 0.00066 1.7E-08 44.5 -1.0 49 4-52 1-49 (429)
456 PRK13536 nodulation factor exp 96.2 0.0047 1.2E-07 39.4 3.4 25 2-26 33-57 (306)
457 COG0645 Predicted kinase [Gene 96.2 0.075 1.9E-06 32.1 9.5 137 2-160 1-155 (170)
458 pfam00004 AAA ATPase family as 96.2 0.0053 1.4E-07 39.0 3.6 23 5-27 1-23 (131)
459 pfam05729 NACHT NACHT domain. 96.2 0.0047 1.2E-07 39.4 3.3 23 3-25 1-23 (165)
460 TIGR00929 VirB4_CagE type IV s 96.2 0.0036 9.3E-08 40.0 2.7 26 6-31 520-545 (931)
461 PRK10865 protein disaggregatio 96.2 0.0044 1.1E-07 39.5 3.1 21 5-25 601-621 (857)
462 COG4778 PhnL ABC-type phosphon 96.2 0.005 1.3E-07 39.2 3.4 25 2-26 37-61 (235)
463 PRK08181 transposase; Validate 96.2 0.0031 8E-08 40.4 2.4 35 3-37 107-141 (269)
464 PRK05707 DNA polymerase III su 96.2 0.018 4.7E-07 35.8 6.3 24 2-25 22-45 (328)
465 cd01881 Obg_like The Obg-like 96.2 0.0017 4.4E-08 42.0 1.0 37 7-44 1-37 (176)
466 CHL00095 clpC Clp protease ATP 96.2 0.0046 1.2E-07 39.4 3.2 22 4-25 541-562 (823)
467 cd01859 MJ1464 MJ1464. This f 96.2 0.003 7.5E-08 40.6 2.2 34 5-38 104-137 (156)
468 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0052 1.3E-07 39.1 3.4 25 3-27 39-63 (226)
469 PRK00349 uvrA excinuclease ABC 96.1 0.005 1.3E-07 39.2 3.3 23 1-23 634-656 (944)
470 TIGR03269 met_CoM_red_A2 methy 96.1 0.0078 2E-07 38.0 4.2 26 2-27 310-335 (520)
471 COG0542 clpA ATP-binding subun 96.1 0.0046 1.2E-07 39.4 3.0 22 4-25 523-544 (786)
472 PRK06526 transposase; Provisio 96.1 0.0031 7.9E-08 40.5 2.1 35 3-37 99-133 (254)
473 COG1122 CbiO ABC-type cobalt t 96.1 0.0053 1.3E-07 39.0 3.3 24 2-25 30-53 (235)
474 TIGR03346 chaperone_ClpB ATP-d 96.1 0.0049 1.2E-07 39.3 3.1 22 4-25 597-618 (852)
475 PRK09518 bifunctional cytidyla 96.1 0.0082 2.1E-07 37.9 4.2 90 4-102 454-545 (714)
476 COG1072 CoaA Panthothenate kin 96.1 0.024 6E-07 35.1 6.5 119 4-136 84-232 (283)
477 pfam09439 SRPRB Signal recogni 96.1 0.0058 1.5E-07 38.8 3.4 32 3-38 4-35 (181)
478 COG4525 TauB ABC-type taurine 96.1 0.0098 2.5E-07 37.4 4.4 74 2-87 31-106 (259)
479 PRK13764 ATPase; Provisional 96.1 0.0058 1.5E-07 38.8 3.2 67 4-71 261-345 (605)
480 PRK05416 hypothetical protein; 96.1 0.0089 2.3E-07 37.7 4.2 136 2-172 6-153 (292)
481 PRK12377 putative replication 96.0 0.0041 1E-07 39.7 2.4 34 4-37 103-136 (248)
482 pfam00448 SRP54 SRP54-type pro 96.0 0.0048 1.2E-07 39.3 2.8 24 3-26 2-25 (196)
483 PRK05201 hslU ATP-dependent pr 96.0 0.0077 2E-07 38.1 3.8 30 2-32 50-79 (442)
484 PRK10261 glutathione transport 96.0 0.015 3.7E-07 36.4 5.1 25 2-26 350-374 (623)
485 PRK00635 excinuclease ABC subu 96.0 0.0068 1.7E-07 38.4 3.4 18 2-19 26-43 (1809)
486 TIGR03345 VI_ClpV1 type VI sec 96.0 0.0062 1.6E-07 38.6 3.2 22 4-25 598-619 (852)
487 cd04105 SR_beta Signal recogni 96.0 0.0051 1.3E-07 39.1 2.7 34 4-41 2-35 (203)
488 PRK13409 putative ATPase RIL; 96.0 0.0066 1.7E-07 38.5 3.3 29 2-30 99-128 (590)
489 PRK01156 chromosome segregatio 96.0 0.006 1.5E-07 38.7 3.1 22 3-24 24-45 (895)
490 COG4987 CydC ABC-type transpor 96.0 0.0078 2E-07 38.0 3.6 26 2-27 364-389 (573)
491 PRK13549 xylose transporter AT 96.0 0.007 1.8E-07 38.3 3.4 26 2-27 288-313 (513)
492 PRK13833 conjugal transfer pro 96.0 0.006 1.5E-07 38.7 3.0 26 2-27 144-169 (323)
493 COG1100 GTPase SAR1 and relate 96.0 0.0064 1.6E-07 38.6 3.1 23 4-26 7-29 (219)
494 pfam03668 ATP_bind_2 P-loop AT 96.0 0.0097 2.5E-07 37.4 4.0 142 3-178 2-155 (284)
495 pfam01695 IstB IstB-like ATP b 96.0 0.0048 1.2E-07 39.3 2.5 36 2-37 47-82 (178)
496 TIGR02528 EutP ethanolamine ut 95.9 0.0034 8.7E-08 40.2 1.6 87 4-121 2-90 (144)
497 cd03115 SRP The signal recogni 95.9 0.0068 1.7E-07 38.4 3.1 22 4-25 2-23 (173)
498 PRK11331 5-methylcytosine-spec 95.9 0.0075 1.9E-07 38.1 3.3 25 1-25 193-217 (459)
499 pfam00931 NB-ARC NB-ARC domain 95.9 0.0072 1.8E-07 38.2 3.2 23 3-25 20-42 (285)
500 TIGR00635 ruvB Holliday juncti 95.9 0.0095 2.4E-07 37.5 3.7 47 5-54 33-88 (305)
No 1
>PRK00300 gmk guanylate kinase; Provisional
Probab=100.00 E-value=0 Score=399.12 Aligned_cols=181 Identities=32% Similarity=0.491 Sum_probs=169.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 9719999879999989999999851898-179986027888988334642010014554221027818766661287045
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
.|+||||+|||||||+||++.|++.+|. |.+++||||||||+||+||+||||||+++|++|+++|+|+||+++|||+||
T Consensus 6 ~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g~~YG 85 (208)
T PRK00300 6 RGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFGNYYG 85 (208)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf 88389999999889999999999729986899897468898998778965799619999999862836678998387035
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH------HC
Q ss_conf 442200233431024200254200024442054320000002321899998762014544899999999865------35
Q gi|254780132|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKN------HS 153 (186)
Q Consensus 80 ts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~------~~ 153 (186)
||+++|++++++|++|||+||++|++++|+.++ ++++|||.|||.++|++||.+|++|+++.|++|+..+. +.
T Consensus 86 T~~~~I~~~~~~G~~vildidvqGa~~lk~~~~-~~~~IFI~Pps~e~L~~RL~~Rg~es~~~I~~Rl~~A~~El~~~~~ 164 (208)
T PRK00300 86 TPREPVEEALAAGKDVLLEIDWQGAQQVKKKMP-DAVSIFILPPSLEELERRLRGRGTDSEEVIARRLEAAKEEIAHASE 164 (208)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 246999999856998797467899999998597-7579998288999999999863899888999999999999988855
Q ss_pred CCEEEECCCHHHHHHHHHHHH--HHHHHCCC
Q ss_conf 988999397899999999999--99973012
Q gi|254780132|r 154 YSFTIVNNHLPTACRQVGLIR--EFVKRGKK 182 (186)
Q Consensus 154 fD~iIiNddle~a~~~l~~Ii--e~l~~~~~ 182 (186)
|||+|+|||+++|+++|..|+ |.+++.++
T Consensus 165 fD~vIiNddl~~a~~~l~~ii~~e~~~~~~q 195 (208)
T PRK00300 165 YDYVIVNDDLETALEELKAIIRAERLRRDRQ 195 (208)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9999989999999999999999986026879
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=392.43 Aligned_cols=173 Identities=31% Similarity=0.475 Sum_probs=166.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE
Q ss_conf 97199998799999899999998518981799860278889883346420100145542210278187666612870454
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt 80 (186)
||+||||+||||+||+||++.|++.. .+.++||+|||+||+||+||+||||||+++|++|+++++||||++|+||||||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 86399998998888899999998634-93799985267999987578024757799999987568747887771973248
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCC
Q ss_conf 4220023343102420025420002444205432000000232189999876201454489999999986------5359
Q gi|254780132|r 81 LKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK------NHSY 154 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~------~~~f 154 (186)
|+..|+..+++|++|+|+||+||++++|+.++ +++.|||.|||.++|++||..||+|+++.|++|+.++ ..+|
T Consensus 82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~f 160 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEF 160 (191)
T ss_pred CHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 68899999866990899985399999997499-96999975999999999997159997999999999999999888759
Q ss_pred CEEEECCCHHHHHHHHHHHHH
Q ss_conf 889993978999999999999
Q gi|254780132|r 155 SFTIVNNHLPTACRQVGLIRE 175 (186)
Q Consensus 155 D~iIiNddle~a~~~l~~Iie 175 (186)
||+|+|||+++|+++|+.|+.
T Consensus 161 dyvivNdd~e~a~~~l~~ii~ 181 (191)
T COG0194 161 DYVIVNDDLEKALEELKSIIL 181 (191)
T ss_pred CEEEECCCHHHHHHHHHHHHH
T ss_conf 999989549999999999999
No 3
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=100.00 E-value=0 Score=386.63 Aligned_cols=173 Identities=33% Similarity=0.518 Sum_probs=164.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102781876666128704544
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
|+||||+|||||||+||+++|++.+|.+.+++||||||||+||+||+||||||+++|++|+++|+|+||+++|||+||||
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEEEECCCCCCCC
T ss_conf 93999989998899999999997689944887044689799877887347850899999986496488767716763574
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCCC
Q ss_conf 220023343102420025420002444205432000000232189999876201454489999999986------53598
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK------NHSYS 155 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~------~~~fD 155 (186)
+++|++++++|++||+++|++|+++|++.++ ++++|||.|||.++|++||.+||++++++|++|+..+ .+.||
T Consensus 81 ~~~i~~~~~~gk~vil~id~~G~~~lk~~~~-~~~~IfI~pps~~~L~~RL~~Rg~e~~~~i~~Rl~~a~~E~~~~~~fD 159 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKFP-DAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFD 159 (180)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHHHCC-CEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7999999960998999878999999997588-648999968899999999996489998999999999999998774399
Q ss_pred EEEECCCHHHHHHHHHHHHH
Q ss_conf 89993978999999999999
Q gi|254780132|r 156 FTIVNNHLPTACRQVGLIRE 175 (186)
Q Consensus 156 ~iIiNddle~a~~~l~~Iie 175 (186)
++|+|+||++|+++|..|+.
T Consensus 160 ~vIvNddle~a~~~l~~ii~ 179 (180)
T TIGR03263 160 YVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred EEEECCCHHHHHHHHHHHHC
T ss_conf 99989799999999999971
No 4
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=100.00 E-value=0 Score=366.29 Aligned_cols=172 Identities=30% Similarity=0.404 Sum_probs=163.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 1999987999998999999985189-817998602788898833464201001455422102781876666128704544
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
|+|||+|||||||+||+++|++++| .|.+++||||||||+||+||+||||||+++|++|+++|+|+||++++||+|||+
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 81 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAEFNGNYYGTS 81 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 86999898999999999999984866734457655479998787896579965899999875437776264079725640
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH------HCCC
Q ss_conf 2200233431024200254200024442054320000002321899998762014544899999999865------3598
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKN------HSYS 155 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~------~~fD 155 (186)
+++|+.++++|++|++++|++|+++|++.+ .++++|||.|||.++|++||.+||+++++.|++|+.++. ..||
T Consensus 82 ~~~I~~~~~~g~~vvl~id~~g~~~lk~~~-~~~~~IfI~pps~~~L~~RL~~Rg~~~~~~i~~Rl~~a~~e~~~~~~fD 160 (182)
T pfam00625 82 KEAIEQIAESGKICILDVDIQGVKQLRKAE-LSPISVFIKPPSLKVLQRRLKGRGTEQEEKINKRMEAAEQEFQHYAEFD 160 (182)
T ss_pred HHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 277799986799699997289999998749-5748999938799999999981488889999999999999973486199
Q ss_pred EEEECCCHHHHHHHHHHHHH
Q ss_conf 89993978999999999999
Q gi|254780132|r 156 FTIVNNHLPTACRQVGLIRE 175 (186)
Q Consensus 156 ~iIiNddle~a~~~l~~Iie 175 (186)
++|+||||++|+++|..|++
T Consensus 161 ~vIvNddle~a~~~l~~ii~ 180 (182)
T pfam00625 161 YIIVNDDLDEAYKKLKEILE 180 (182)
T ss_pred EEEECCCHHHHHHHHHHHHH
T ss_conf 99989899999999999997
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=0 Score=354.94 Aligned_cols=174 Identities=34% Similarity=0.467 Sum_probs=163.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE
Q ss_conf 71999987999998999999985189-81799860278889883346420100145542210278187666612870454
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt 80 (186)
.|+|||+|||||||+||++.|++++| .|.+++||||||||+||++|+||||||+++|++|+++|+|+||++++||+|||
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~flE~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCC
T ss_conf 97799999999999999999986396450577876727998899999636997179999998727417888747877541
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCC
Q ss_conf 4220023343102420025420002444205432000000232189999876201454489999999986------5359
Q gi|254780132|r 81 LKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK------NHSY 154 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~------~~~f 154 (186)
++++|++++++|++|++++|++|+.+|++.++ ++++|||.|||.++|++||..|++++++.+++|+.++ .+.|
T Consensus 82 ~~~~I~~~~~~g~~~ildi~~~g~~~l~~~~~-~~~~Ifi~pps~e~L~~RL~~Rg~~~~~~i~~Rl~~a~~e~~~~~~f 160 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQL-YPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLF 160 (184)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 06789998726986999962999999998588-80799993899999999997169999999999999999999647339
Q ss_pred CEEEECCCHHHHHHHHHHHHHH
Q ss_conf 8899939789999999999999
Q gi|254780132|r 155 SFTIVNNHLPTACRQVGLIREF 176 (186)
Q Consensus 155 D~iIiNddle~a~~~l~~Iie~ 176 (186)
|++|+|+|+++|+++|..|++.
T Consensus 161 d~vIvN~dl~~a~~~l~~iI~~ 182 (184)
T smart00072 161 DYVIVNDDLEDAYEELKEILEA 182 (184)
T ss_pred CEEEECCCHHHHHHHHHHHHHH
T ss_conf 9999898999999999999985
No 6
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=100.00 E-value=0 Score=321.48 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=158.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 97199998799999899999998518-98179986027888988334642010014554221027818766661287045
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~-~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
||+|||||||||+||+||++.|++.. +.+.+++|+||||++.| |+||||||+++|++|+++|.|+|||++||+|||
T Consensus 1 mG~LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~e~~---g~dy~fvs~eeF~~~i~~g~F~~~w~~~g~~YG 77 (184)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (184)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CCCCEECCHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 97099998998699999999998448998899987237899999---968288799999999977982999986695667
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCEE
Q ss_conf 4422002334310242002542000244420543200000023218999987620145448999999998653--59889
Q gi|254780132|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNH--SYSFT 157 (186)
Q Consensus 80 ts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~--~fD~i 157 (186)
|+. +|+..+++|++++++++++|+.++++.++.. +.+|+.|||.++|++||.+||+|+++.|++|+..+.+ .||++
T Consensus 78 ~~~-~v~~~l~~G~dVi~~g~~~~~~~~~~~~~~~-~~~~~i~ps~~~L~~RL~~RGtEs~e~I~~RL~~A~~~~~~d~~ 155 (184)
T PRK10078 78 VGI-EIDLWLHAGFDVVVNGSRAHLPQARARYQSA-LLPVCLQVSPEILRQRLENRGRENASEINARLARAARYQPQDCH 155 (184)
T ss_pred CCH-HHHHHHHCCCEEEEECHHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 078-9999997499499951798999999867985-89999579999999999972999999999999961215788999
Q ss_pred EECCC--HHHHHHHHHHHHHHHHHCC
Q ss_conf 99397--8999999999999997301
Q gi|254780132|r 158 IVNNH--LPTACRQVGLIREFVKRGK 181 (186)
Q Consensus 158 IiNdd--le~a~~~l~~Iie~l~~~~ 181 (186)
|+||| |++|+++|..|+..-+++.
T Consensus 156 vInnDg~le~av~~l~~ii~~~~~~~ 181 (184)
T PRK10078 156 TLNNDGSLRQSVDTLLTLLHQKEKHH 181 (184)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99899889999999999999987403
No 7
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=100.00 E-value=1.4e-45 Score=297.21 Aligned_cols=130 Identities=33% Similarity=0.544 Sum_probs=123.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 999987999998999999985189-8179986027888988334642010014554221027818766661287045442
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
||||+|||||||+||+++|++..| .+.+++||||||||+||+||+||||||+++|++|+++|+|+||++++||+|||++
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~E~~G~dY~Fvs~~~F~~~i~~g~f~E~~~~~g~~YGt~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCEEEEEEEECCCCCCCCH
T ss_conf 99999999889999999998519877687566037899888778967898679999999866914999999880662789
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH
Q ss_conf 2002334310242002542000244420543200000023218999987620
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK 134 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~ 134 (186)
++|.+++++|++||+++|++|+++||+.++ ++++|||.|||.+.+..+|.+
T Consensus 81 ~~I~~~~~~G~~vil~id~~g~~~lk~~~~-~~~~IFI~PP~~~i~~~~~~~ 131 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYP-DAVSIFILPPDYVIVNDDLEK 131 (137)
T ss_pred HHHHHHHHCCCEEEEEEEHHHHHHHHHCCC-CEEEEEEECCCHHHHHHHHHH
T ss_conf 999999963994999974899999997099-819999979096899999999
No 8
>KOG0609 consensus
Probab=100.00 E-value=2.9e-44 Score=288.79 Aligned_cols=179 Identities=27% Similarity=0.350 Sum_probs=157.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 1999987999998999999985189-817998602788898833464201001455422102781876666128704544
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
|.+||+||+|+|...|.+.|+...| +|..+|||||||||++|+||++|||||+++|+.+|.+|+|+||++|.+|+|||+
T Consensus 341 rtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs 420 (542)
T KOG0609 341 RTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTS 420 (542)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEECCCCHHCCCCCH
T ss_conf 32899777663669999999863865556678776779887777985423510487765565188552475020206660
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC-------CCCHH---HH----HHHH
Q ss_conf 2200233431024200254200024442054320000002321899998762014-------54489---99----9999
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDIPF---NL----DPDL 147 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~e~~~---~i----~~r~ 147 (186)
+++|..++.+||+|+||+.|+..+.|+.. .+.|++|||.||+.+++++-...-. .-.+. +| ++..
T Consensus 421 ~dsVr~v~~~gKicvLdv~Pqalk~lRt~-Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i~~eS~~ie 499 (542)
T KOG0609 421 LDSVRNVIASGKICVLDVEPQALKVLRTA-EFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEIIDESARIE 499 (542)
T ss_pred HHHHHHHHHHCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999738778874477775323330-35644998359970667887653035665454578799999999999999
Q ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98653598899939789999999999999973012
Q gi|254780132|r 148 FGKNHSYSFTIVNNHLPTACRQVGLIREFVKRGKK 182 (186)
Q Consensus 148 ~~~~~~fD~iIiNddle~a~~~l~~Iie~l~~~~~ 182 (186)
..+.|.||.+|+|+|++.|+++|+.+++.+...++
T Consensus 500 ~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepq 534 (542)
T KOG0609 500 QQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQ 534 (542)
T ss_pred HHHHHHEEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 87300023899747478899999999997404883
No 9
>KOG0707 consensus
Probab=100.00 E-value=2.5e-41 Score=271.07 Aligned_cols=172 Identities=28% Similarity=0.364 Sum_probs=161.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 19999879999989999999851898-17998602788898833464201001455422102781876666128704544
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
+-+||+||||+||+||.++|++.+|. |.+++|||||.||++|+||+||||++.++|+.|++.++|+||+.++||+|||+
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts 117 (231)
T KOG0707 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS 117 (231)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 52798588775435799999987377613774577789986011677443336789998860002556666436657722
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH---------
Q ss_conf 22002334310242002542000244420543200000023218999987620145448999999998653---------
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNH--------- 152 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~--------- 152 (186)
++++......|+.|++|||.+|++.++.. ..+++.+|+.||+...+++||..|++|.++++.+|+.++..
T Consensus 118 i~av~~~~~~gk~~ildId~qg~~~i~~~-~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g 196 (231)
T KOG0707 118 IAAVQRLMLSGKVCILDIDLQGVQPIRAT-SLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENSG 196 (231)
T ss_pred HHHHHHHHHCCCCCEEEHHHCCCEEEECC-CCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997359820310222071332058-87657898228860158887541474019999999886565320234776
Q ss_pred CCCEEEEC-CCHHHHHHHHHHHHH
Q ss_conf 59889993-978999999999999
Q gi|254780132|r 153 SYSFTIVN-NHLPTACRQVGLIRE 175 (186)
Q Consensus 153 ~fD~iIiN-ddle~a~~~l~~Iie 175 (186)
.||++++| +++++|++++..++.
T Consensus 197 ~~d~~~~ns~~lee~~kel~~~~~ 220 (231)
T KOG0707 197 SFDLVIVNSDRLEEAYKELEIFIS 220 (231)
T ss_pred CCCCEECCCCCHHHHHHHHHHHHH
T ss_conf 345212178862454555432346
No 10
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=99.97 E-value=6.6e-31 Score=207.99 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=138.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 71999987999998999999985---189817998602788898833464201001455422102781876666128704
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL---NSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYY 78 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~---~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~Y 78 (186)
|+||+|+||||||||||+...-+ ..|++.|+.+|.|||--.| |+|+-=+|.+||..+...|.|.-+|+.||.+|
T Consensus 1 G~li~vvGPSGaGKDtLl~~AR~~l~~~~r~~F~rRvITR~a~Ag---gEnH~Als~~EF~~~~~~G~FAl~W~AHGL~Y 77 (183)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPADAG---GENHDALSTEEFDAREDGGAFALSWQAHGLSY 77 (183)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC---CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 937899707788677899999997048996588312774375224---66764047789999971898189861367435
Q ss_pred EEECCCHHHHHHHCCCCCCCCCCCHHHH----HHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH--
Q ss_conf 5442200233431024200254200024----4420543200000023218999987620145448999999998653--
Q gi|254780132|r 79 GYLKEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNH-- 152 (186)
Q Consensus 79 Gts~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~-- 152 (186)
|++. +|+..+.+|.++|. ||+++ ++..|+ +..+|.|++ +.++|++||..||+|+.++|++||.....
T Consensus 78 GiP~-eid~wL~~G~~Vv~----NGSRa~Lp~ar~rYp-~L~~V~Ita-~~dVLa~RL~~RgRE~~~~I~~RL~Rs~~~~ 150 (183)
T TIGR02322 78 GIPV-EIDQWLEAGDVVVV----NGSRAVLPEARQRYP-NLLVVNITA-SPDVLAQRLAARGRESAEEIEERLARSARFA 150 (183)
T ss_pred CCCH-HHHHHHHCCCEEEE----ECHHHHHHHHHHHHH-CCEEEEEEC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 7830-37878754998999----752889999987432-460278745-8128999999758989889999988775311
Q ss_pred ------CCCEE-EECC-CHHHHHHHHHHHH
Q ss_conf ------59889-9939-7899999999999
Q gi|254780132|r 153 ------SYSFT-IVNN-HLPTACRQVGLIR 174 (186)
Q Consensus 153 ------~fD~i-IiNd-dle~a~~~l~~Ii 174 (186)
.+|.+ |.|+ .++.|.+.|-.++
T Consensus 151 ~dll~~~~dv~~i~NsG~~~~ag~~L~~ll 180 (183)
T TIGR02322 151 GDLLLEPADVTTIDNSGSLEVAGETLLRLL 180 (183)
T ss_pred CHHHCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 022005987279846802789999999998
No 11
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.2e-26 Score=178.90 Aligned_cols=164 Identities=21% Similarity=0.254 Sum_probs=136.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 9719999879999989999999851---8981799860278889883346420100145542210278187666612870
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLN---SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~---~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
||++|+++||||+|||||+..+... .|++.|+.++.|||.-+| |+|+--+|..+|.++-.+|.|.-+|+.||.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC---CCCCCCCCHHHHHHHHHCCCEEEEEHHCCCC
T ss_conf 7549999888877767799999987266874599999864667777---6554345889999885357626773104822
Q ss_pred EEEECCCHHHHHHHCCCCCCCCCCCHHH----HHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH-
Q ss_conf 4544220023343102420025420002----44420543200000023218999987620145448999999998653-
Q gi|254780132|r 78 YGYLKEDINNPMEHGYDILLILTHQGLA----PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNH- 152 (186)
Q Consensus 78 YGts~~~i~~~~~~g~~~il~id~~G~~----~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~- 152 (186)
||++. +|+..+..|.++|. +|++ +.+..|+ +..+|-|.+ +.++|.+||..||+|+.++|.+|+.....
T Consensus 81 Ygip~-eId~wl~~G~vvl~----NgSRa~Lp~arrry~-~Llvv~ita-~p~VLaqRL~~RGREs~eeI~aRL~R~a~~ 153 (192)
T COG3709 81 YGIPA-EIDLWLAAGDVVLV----NGSRAVLPQARRRYP-QLLVVCITA-SPEVLAQRLAERGRESREEILARLARAARY 153 (192)
T ss_pred CCCCH-HHHHHHHCCCEEEE----ECCHHHHHHHHHHHH-CCEEEEEEC-CHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 25716-59999857988998----262766088998600-323699724-878999999986547999999999751434
Q ss_pred ---CCCEEEECC--CHHHHHHHHHHHH
Q ss_conf ---598899939--7899999999999
Q gi|254780132|r 153 ---SYSFTIVNN--HLPTACRQVGLIR 174 (186)
Q Consensus 153 ---~fD~iIiNd--dle~a~~~l~~Ii 174 (186)
..|.+-+|| .++.+.+++...+
T Consensus 154 ~~~~~dv~~idNsG~l~~ag~~ll~~l 180 (192)
T COG3709 154 TAGPGDVTTIDNSGELEDAGERLLALL 180 (192)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 358998689738986778999999999
No 12
>KOG0708 consensus
Probab=99.76 E-value=6.4e-18 Score=129.38 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=126.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 999987999998999999985189-8179986027888988334642010014554221027818766661287045442
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
=++|.||- |+-|.+.|+..+| .|..+++|||||. +++|+..++.+.|++++++++++|||+.
T Consensus 189 PVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~~tsv 251 (359)
T KOG0708 189 PVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLYGTSV 251 (359)
T ss_pred CEEECCCH---HHHHHHHHHHHHHCCCCCCCHHHHCCC--------------HHHHHHHCCCCCEEEECCCCCCCCEEHH
T ss_conf 26750426---899999998742010240516650600--------------8876231245751210334797322358
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC----CCEEE
Q ss_conf 20023343102420025420002444205432000000232189999876201454489999999986535----98899
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNHS----YSFTI 158 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~~----fD~iI 158 (186)
.+|.++.++|++||||+..++.+.|... ..-|++|||.|-|.+.++.+-.++..+..+++-.+-+..+.+ |..+|
T Consensus 252 ~si~~va~k~~HCiLdv~~~ai~rLq~~-~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~klEqe~~~~~t~vv 330 (359)
T KOG0708 252 ASIREVAEKGKHCLLDVGGDAIRRLQRN-QIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERARKLEQELDRYFTLVV 330 (359)
T ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHC-CEECEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_conf 8799986279862774273458788866-510369999723278899876135668899999999976765620617998
Q ss_pred ECCCHHHHHHHHHHHHHHH
Q ss_conf 9397899999999999999
Q gi|254780132|r 159 VNNHLPTACRQVGLIREFV 177 (186)
Q Consensus 159 iNddle~a~~~l~~Iie~l 177 (186)
.-+.++..+.+++.+|+..
T Consensus 331 ~~~s~e~i~~qvk~~I~~E 349 (359)
T KOG0708 331 QGGSLEELLSQVKDIIEDE 349 (359)
T ss_pred ECCCHHHHHHHHHHHHHHH
T ss_conf 2554799999999999874
No 13
>PRK08356 hypothetical protein; Provisional
Probab=98.86 E-value=2.9e-09 Score=76.95 Aligned_cols=152 Identities=18% Similarity=0.264 Sum_probs=79.8
Q ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHCCCEEEEEEEC----------CC-------CCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 971999-987999998999999985189817998602----------78-------889883346420100145542210
Q gi|254780132|r 1 MAHIFV-LIGASGVGKTTIAKQVVLNSEYLVMPVGVT----------TR-------RPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 1 m~kiiv-i~GpsGsGK~tl~~~L~~~~~~~~~~v~~T----------TR-------~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|.|||| |+|..||||+|+++.| ++. +|.. +|+- |+ -++.+| .|++.+.+.-
T Consensus 3 ~~kmIIgitG~~gSGK~tva~~l-~~~-G~~~-~s~sd~lrd~~~~~~~~~~~~~e~~~~~e--------~tre~l~~~~ 71 (195)
T PRK08356 3 VEKMIVGIAGKIAAGKTTVAKFL-EEL-GFCR-ISCSEPLIDILTGNVSDYSWVPEVPFKGE--------PTRENLIELG 71 (195)
T ss_pred CCEEEEEEECCCCCCHHHHHHHH-HHC-CCEE-EECCHHHHHHHHCCCCCCCCHHHHHHCCC--------CCHHHHHHHH
T ss_conf 75269998589988789999999-986-9928-84227899998402320001155551479--------9889999999
Q ss_pred CCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHH------HHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC
Q ss_conf 2781876666128704544220023343102420025420002------4442054320000002321899998762014
Q gi|254780132|r 63 HTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA------PLKKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 63 ~~~~FiE~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~------~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (186)
..+ -+-+|.-+- .+..+++ +..+++++++ |++ .+|+. +. ..|.|.+| .+.--+||..|+
T Consensus 72 ---~~L--R~~~G~~i~-a~~~~~~-i~~~~~vVId----giR~~~Eve~lk~~-~~--~lI~V~A~-~~~R~eRl~~Rg 136 (195)
T PRK08356 72 ---RYL--KEKYGEDIL-IRLAVDK-LRHCKNIAID----GVRSRGEVEAIKRM-GG--KVIYVEAK-PEIRFERLRRRG 136 (195)
T ss_pred ---HHH--HHHHCCHHH-HHHHHHH-HHCCCCEEEE----CCCCHHHHHHHHHC-CC--EEEEEECC-HHHHHHHHHHCC
T ss_conf ---999--998692589-9999999-7448978994----89988999999965-99--79999677-878999999768
Q ss_pred CCCHH---HHH----HHHHHH--------HHCCCEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 54489---999----999986--------53598899939-78999999999999997
Q gi|254780132|r 137 EDIPF---NLD----PDLFGK--------NHSYSFTIVNN-HLPTACRQVGLIREFVK 178 (186)
Q Consensus 137 ~e~~~---~i~----~r~~~~--------~~~fD~iIiNd-dle~a~~~l~~Iie~l~ 178 (186)
.+.+. ..+ ++.... -...||+|+|+ ++++-.+++..|+..++
T Consensus 137 r~~D~~~~s~e~fl~~d~~e~~~~~~~~~i~~ADy~I~N~gtleel~~~i~~il~~i~ 194 (195)
T PRK08356 137 AEKDRGIKSLEDLLKFDEWEEKLYQTTKLKDKADYVIVNEGTLEELRKKVEEILRELK 194 (195)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 9888650429999986488886048788998799999829989999999999999833
No 14
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.86 E-value=1.6e-08 Score=72.41 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=85.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 19999879999989999999851898179986027888988334642010014554221027818766661287045442
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
++||++|+||+||+||.+.|.+.. +..| +||=||| +++.-++|- +|.=|.-..-.+++ -.-.
T Consensus 9 ~iiVVMGVsGsGKSTig~~LA~~l-~~~f-------------iegDdfH--p~~Ni~KM~-~GiPLtD~DR~pWL-~~l~ 70 (177)
T PRK11545 9 HIYVLMGVSGSGKSAVASAVAHQL-HAAF-------------LDGDFLH--PRCNIEKMA-SGEPLNDDDRKPWL-QALN 70 (177)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-CCCE-------------ECCCCCC--CHHHHHHHH-CCCCCCHHHHHHHH-HHHH
T ss_conf 599998479899999999999981-9985-------------5365558--999999862-89999868889999-9999
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHCC-------CCCEEEEHCCCCCHHHHHHHHHHCCC-CCHHH-HHHHHHHH---
Q ss_conf 20023343102420025420002444205-------43200000023218999987620145-44899-99999986---
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLY-------EDQVTSIFIAPPSEAELIQRRIKRRE-DIPFN-LDPDLFGK--- 150 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~-------~~~~~~IfI~pps~~~L~~RL~~R~~-e~~~~-i~~r~~~~--- 150 (186)
+.+......+..+++-+ . +||+.| ..++..||+.. +.+.+.+||..|.. -.+.. +...+..-
T Consensus 71 ~~~~~~~~~~~~~VlaC---S--ALKr~YRd~Lr~~~~~~~fv~L~g-~~~~i~~Rl~~R~~HFmp~~LL~SQf~tLE~P 144 (177)
T PRK11545 71 DAAFAMQRTNKVSLIVC---S--ALKKHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQFETLQEP 144 (177)
T ss_pred HHHHHHHCCCCCEEEEE---C--CCCHHHHHHHHHCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999972699669987---0--111999999980699759999729-99999999974646899878999899981799
Q ss_pred -HHCCCEEEECC--CHHHHHHHHHHHHHHHHHCCC
Q ss_conf -53598899939--789999999999999973012
Q gi|254780132|r 151 -NHSYSFTIVNN--HLPTACRQVGLIREFVKRGKK 182 (186)
Q Consensus 151 -~~~fD~iIiNd--dle~a~~~l~~Iie~l~~~~~ 182 (186)
..+.|.+.++- .+++.+ ..|++.+++++-
T Consensus 145 ~~~E~~~~~vdi~~~~e~iv---~~il~~l~~g~~ 176 (177)
T PRK11545 145 GADETDVLVVDIDQPLEGVV---ASTIEVIKKGKT 176 (177)
T ss_pred CCCCCCEEEEECCCCHHHHH---HHHHHHHHCCCC
T ss_conf 98889869997899999999---999999975387
No 15
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.75 E-value=2.6e-08 Score=71.17 Aligned_cols=154 Identities=13% Similarity=0.182 Sum_probs=87.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102781876666128704544
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
|+-||++|+|||||||+.+.|.+.. +..|. ||=||| +++.-++|-+ |.=+.-..-..+. -+.
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L-~~~fi-------------egDd~H--p~~Ni~KM~~-GiPL~D~DR~pWL-~~l 64 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF-SAKFI-------------DGDDLH--PAKNIDKMSQ-GIPLTDEDRLPWL-ERL 64 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH-CCCEE-------------CCCCCC--CHHHHHHHHC-CCCCCHHHHHHHH-HHH
T ss_conf 8579998289899899999999995-98776-------------234437--8989999868-9998866799999-999
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHHHCC-------CCCEEEEHCCCCCHHHHHHHHHHCCC-CCHHH-HHHHHHHH--
Q ss_conf 220023343102420025420002444205-------43200000023218999987620145-44899-99999986--
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLY-------EDQVTSIFIAPPSEAELIQRRIKRRE-DIPFN-LDPDLFGK-- 150 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~-------~~~~~~IfI~pps~~~L~~RL~~R~~-e~~~~-i~~r~~~~-- 150 (186)
.+.+.....+|..+++-+ .+ ||+.| ..++..||+.. +.+.+.+|+..|.. -.+.. ++..+..-
T Consensus 65 ~~~~~~~~~~~~~~VvaC---SA--LK~~YRd~Lr~~~~~v~fv~L~g-~~~~i~~Rl~~R~gHFMp~~LL~SQf~tLE~ 138 (176)
T PRK09825 65 NDASYSLYKKNETGFIVC---SS--LKKQYRDILRKSSPNVHFLWLDG-DYETILARMQRRAGHFMPPDLLQSQFDALER 138 (176)
T ss_pred HHHHHHHHHCCCCEEEEE---HH--HHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 999999996499829971---88--67999999974799879999718-9999999997460379997999989998179
Q ss_pred --HHCCCEEEEC--CCHHHHHHHHHHHHHHHHH
Q ss_conf --5359889993--9789999999999999973
Q gi|254780132|r 151 --NHSYSFTIVN--NHLPTACRQVGLIREFVKR 179 (186)
Q Consensus 151 --~~~fD~iIiN--ddle~a~~~l~~Iie~l~~ 179 (186)
..+-|.+.++ ..+++.++++...+..+++
T Consensus 139 P~~dE~~v~~idi~~~~e~iv~~~~~al~a~~~ 171 (176)
T PRK09825 139 PCADEHDIARIDVNHDIENVTEQCRQAVQAFRQ 171 (176)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 998889869997899999999999999999998
No 16
>PRK08233 hypothetical protein; Provisional
Probab=98.70 E-value=2.2e-07 Score=65.52 Aligned_cols=145 Identities=17% Similarity=0.260 Sum_probs=74.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHH-CCHHHHHHHHCCC-EEEEEEEECCCEEEE
Q ss_conf 19999879999989999999851898179986027888988334642010-0145542210278-187666612870454
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRF-ISQSQFKGWKHTG-LFIETTKVRDEYYGY 80 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~F-vs~~~F~~~i~~~-~FiE~~~~~g~~YGt 80 (186)
.+|-|+|+||||||||+++|.+..|.-.. .+. | +|++ .+.+.+......+ .|- .+--.
T Consensus 4 ~IIgIaGgSgSGKTtla~~l~~~l~~~~~-~~~----------D--~y~~~~~~~~~~~~~~~~~~~d-------~~d~~ 63 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKA-LYF----------D--RYDFDNCPEDICKWIDDGANYS-------EWVLT 63 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEE-EEE----------C--CCCCCCCHHHHHHHHCCCCCCC-------HHHHH
T ss_conf 89999688867899999999997467758-996----------6--6555468788998740677866-------66699
Q ss_pred -ECCCHHHHHHHCCCC-CCCCCCCHHH-----HHHHCCCCCEEEEHCCCCCHHHHHHHHHH----C-CCCCHHHHHHHHH
Q ss_conf -422002334310242-0025420002-----44420543200000023218999987620----1-4544899999999
Q gi|254780132|r 81 -LKEDINNPMEHGYDI-LLILTHQGLA-----PLKKLYEDQVTSIFIAPPSEAELIQRRIK----R-REDIPFNLDPDLF 148 (186)
Q Consensus 81 -s~~~i~~~~~~g~~~-il~id~~G~~-----~lk~~~~~~~~~IfI~pps~~~L~~RL~~----R-~~e~~~~i~~r~~ 148 (186)
....+.. +.+|..+ ++. ++|.. .|++.+. +.|||..|....|.+|+.+ | |++.+..+.+-+.
T Consensus 64 ~l~~~l~~-l~~~~~~d~iI--vEgil~l~~~~lr~l~D---~kIfVdtp~Dirl~RRi~RDi~Er~gr~i~svl~qY~~ 137 (182)
T PRK08233 64 PLIKDIQE-LIAKSNVDYII--VDYPFAYLNSEMRQYID---VTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN 137 (182)
T ss_pred HHHHHHHH-HHCCCCCCEEE--EEEEHHHCCHHHHHHHC---EEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999-85599872899--96443626898997718---78997286899999988888777618878999999999
Q ss_pred HH-----------HHCCCEEEECC-CHHHHHHHHHHH
Q ss_conf 86-----------53598899939-789999999999
Q gi|254780132|r 149 GK-----------NHSYSFTIVNN-HLPTACRQVGLI 173 (186)
Q Consensus 149 ~~-----------~~~fD~iIiNd-dle~a~~~l~~I 173 (186)
.. ...-|.+|.|. .++..++.++..
T Consensus 138 ~VrPm~~~fvePsk~~ADiIId~~~aid~i~~~i~~~ 174 (182)
T PRK08233 138 YARPLYLEALDTVKPNADIVLDGALSVEEIINQIEEE 174 (182)
T ss_pred HHHHHHHHHHCHHHHCCCEEEECCCCHHHHHHHHHHH
T ss_conf 8788999985700321968985860799999999999
No 17
>PRK02496 adk adenylate kinase; Provisional
Probab=98.66 E-value=8.4e-08 Score=68.11 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=84.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE
Q ss_conf 97199998799999899999998518981799860278889883346420100145542210278187666612870454
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt 80 (186)
|.||++ .||+||||+|.++.|.+++.-.+++..--=|. |+.... -.-.+.+..+++|.++.-.-+..-
T Consensus 1 m~riil-lG~PGSGKgTqa~~L~~~~~~~his~GdllR~----~~~~~s---~lg~~i~~~i~~G~lvpd~iv~~l---- 68 (185)
T PRK02496 1 MARLIF-LGPPGAGKGTQAVVLAEHLQIPHISTGDILRQ----AITEQT---PLGIKAQGYVDSGELVPDQLVLGL---- 68 (185)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHCCEEECHHHHHHH----HHHCCC---HHHHHHHHHHHCCCCCCCHHHHHH----
T ss_conf 918999-79999998999999999969977888899999----987499---889999999987996772889999----
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCHHHHH---HH---CCCCC-EEEEHCCCCCHHHHHHHHHHCC--CCCHHHHHHHHHHHH
Q ss_conf 422002334310242002542000244---42---05432-0000002321899998762014--544899999999865
Q gi|254780132|r 81 LKEDINNPMEHGYDILLILTHQGLAPL---KK---LYEDQ-VTSIFIAPPSEAELIQRRIKRR--EDIPFNLDPDLFGKN 151 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~id~~G~~~l---k~---~~~~~-~~~IfI~pps~~~L~~RL~~R~--~e~~~~i~~r~~~~~ 151 (186)
-.+.+...- ..+-.|+|==|.-..|. .. ..+.. ..+|++..| .+++.+|+..|+ +|.++.+.+|+..+.
T Consensus 69 i~~~l~~~~-~~~g~ilDGfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~R~DD~~e~i~~Rl~~y~ 146 (185)
T PRK02496 69 VQERLQQPD-AANGWILDGFPRNVTQAAFLDELLQEINQSGDRVVNLDVP-DDVIVERLLARGRKDDTEEVIRRRLEVYR 146 (185)
T ss_pred HHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 999984845-3387788689885788999999999705673033330499-99999998746767898899999999999
Q ss_pred H-------CC----CEEEEC--CCHHHHHHHHHHHH
Q ss_conf 3-------59----889993--97899999999999
Q gi|254780132|r 152 H-------SY----SFTIVN--NHLPTACRQVGLIR 174 (186)
Q Consensus 152 ~-------~f----D~iIiN--ddle~a~~~l~~Ii 174 (186)
. .| -++.+| .++++.+++|..++
T Consensus 147 ~~t~pvi~~y~~~~~~~~Idg~~~ieeV~~~I~~~l 182 (185)
T PRK02496 147 EQTAPLIDYYRDRQKLLTIDGNQSVEAVTTRLKAAL 182 (185)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 999999999984697899989999899999999986
No 18
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=98.63 E-value=2.7e-07 Score=65.07 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE---ECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 719999879999989999999851898--179986---027888988334642010014554221027818766661287
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY--LVMPVG---VTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDE 76 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~--~~~~v~---~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~ 76 (186)
|+||+|-|+|-||||||++.|....+. +.+++= .+.+|.+...-+|.+ |..... +++.+..-
T Consensus 1 G~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~gl~--~~~~~~-----------~~g~~~~~ 67 (174)
T pfam07931 1 GRIILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEAMPPKRQDSGDGLE--WSTVGP-----------VIGPEFPL 67 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--CCCCCC-----------CHHHHHHH
T ss_conf 91999748998887999999998474746764285888767711258877766--366665-----------23566999
Q ss_pred EEEEECCCHHHHHHHCCCCCCC---CCCCHHHH-HHHCC-CCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHH---H
Q ss_conf 0454422002334310242002---54200024-44205-432000000232189999876201454489999999---9
Q gi|254780132|r 77 YYGYLKEDINNPMEHGYDILLI---LTHQGLAP-LKKLY-EDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDL---F 148 (186)
Q Consensus 77 ~YGts~~~i~~~~~~g~~~il~---id~~G~~~-lk~~~-~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~---~ 148 (186)
.+.--..+|...+++|.++|+| .++..... +++.+ +..++.|=|.+| .+++++|-..|+.-.. -.++.- .
T Consensus 68 ~~~~~~~~iaa~a~~G~nvIvD~v~~~~~~l~d~~~~~L~g~~v~~VGV~Cp-leil~~RE~~RgDR~~-G~A~~q~~~V 145 (174)
T pfam07931 68 FEAAFYEAVAAMARAGNNVIVDDVILSGEWLQDCLQRLLSGLDVLFVGVRCP-LEVLERREIERGDRVP-GLAAWQAEAV 145 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCC-CHHHHHHHHH
T ss_conf 9999999999999779998996546693789999999858981799998789-9999999873699996-5557899860
Q ss_pred HHHHCCCEEEEC--CCHHHHHHHHH
Q ss_conf 865359889993--97899999999
Q gi|254780132|r 149 GKNHSYSFTIVN--NHLPTACRQVG 171 (186)
Q Consensus 149 ~~~~~fD~iIiN--ddle~a~~~l~ 171 (186)
.....||+.|.- ...++|.++|.
T Consensus 146 H~~~~YDlevDTs~~s~~ecA~~I~ 170 (174)
T pfam07931 146 HAGVEYDLEVDTSHQTPEECARRIR 170 (174)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 2599986686799999999999999
No 19
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.63 E-value=2.8e-07 Score=64.94 Aligned_cols=162 Identities=14% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEC-C----CCCCCCCCCCCCHHHCCHHHHHHHHC-CC-----EEEEE
Q ss_conf 71999987999998999999985189817998602-7----88898833464201001455422102-78-----18766
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVT-T----RRPRVDEKQYIDYRFISQSQFKGWKH-TG-----LFIET 70 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~T-T----R~~R~~E~~g~dY~Fvs~~~F~~~i~-~~-----~FiE~ 70 (186)
..+|+|.|.||+||+||+-.|..+. ++..++|.- = |+--+-| . .-|.-|-+..+.+-. .+ .|..+
T Consensus 3 ~~iiligG~sGvGKStla~~lA~rl-gi~~visTD~IRevlR~~i~~e-P--~L~~Ssy~A~~~~~~~~~~~ii~Gf~~q 78 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR-AIDIVLSGDYLREFLRPYVDDE-P--VLAKSVYDAWEFYGSMTDENIVKGYLDQ 78 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHHHHHHHHHCCCC-C--CHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 4799985799887899999999974-9975534347999999866887-4--0033046798870896527899999999
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH----HHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHH-----
Q ss_conf 661287045442200233431024200254200024----44205432000000232189999876201454489-----
Q gi|254780132|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPF----- 141 (186)
Q Consensus 71 ~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~----- 141 (186)
++.= .=| -..-|+.++.+|.++++ +|+.- +......+++.++|..++.+..++|+..|+.++..
T Consensus 79 ~~~V--~~g-i~avi~Ra~~eg~slII----EGVHlvP~~i~~~~~~~~~~~~l~i~dee~H~~Rf~~R~~~~~~~~p~~ 151 (197)
T PRK12339 79 ARAI--MPG-INRVIRRALLNGEDLVI----ESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGK 151 (197)
T ss_pred HHHH--HHH-HHHHHHHHHHCCCCEEE----EEEEECHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999--999-99999999973997799----8521177887788765958999997888999999999854312677166
Q ss_pred ----------HHHHHHHHHHHCCCE-EEECCCHHHHHHHHHHHH
Q ss_conf ----------999999986535988-999397899999999999
Q gi|254780132|r 142 ----------NLDPDLFGKNHSYSF-TIVNNHLPTACRQVGLIR 174 (186)
Q Consensus 142 ----------~i~~r~~~~~~~fD~-iIiNddle~a~~~l~~Ii 174 (186)
.|+.-+...+.+++. +|.|.|++++.+.+-.++
T Consensus 152 ry~~~f~~IR~Iq~ylv~~A~~~~ipvI~n~~~d~s~~~i~~~i 195 (197)
T PRK12339 152 RLAEHLPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHH
T ss_conf 99998999999999999988873998553772899999999984
No 20
>PTZ00301 uridine kinase; Provisional
Probab=98.63 E-value=4.1e-07 Score=63.91 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=66.4
Q ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHC-----CCEEEEEE---E-CCCCCCCCCCCCCCHHHCCHH-----HHHH---HH
Q ss_conf 971999-98799999899999998518-----98179986---0-278889883346420100145-----5422---10
Q gi|254780132|r 1 MAHIFV-LIGASGVGKTTIAKQVVLNS-----EYLVMPVG---V-TTRRPRVDEKQYIDYRFISQS-----QFKG---WK 62 (186)
Q Consensus 1 m~kiiv-i~GpsGsGK~tl~~~L~~~~-----~~~~~~v~---~-TTR~~R~~E~~g~dY~Fvs~~-----~F~~---~i 62 (186)
|...+| |+|+|||||||+++.+.+.. +.-..+++ | -.+...+-+..| .+.|=..+ -|.+ ..
T Consensus 1 m~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~-~~NfDhP~a~D~dLl~~~L~~L 79 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERA-YTNYDHPKSLEHDLLTTHLREL 79 (210)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCC-CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 998899996887678999999999998761499807998367667787658865627-8899982303699999999999
Q ss_pred CCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH-----HHHCCCCCEEEEHCCCCCHHHHHHHHH----
Q ss_conf 27818766661287045442200233431024200254200024-----442054320000002321899998762----
Q gi|254780132|r 63 HTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI---- 133 (186)
Q Consensus 63 ~~~~FiE~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~---- 133 (186)
++|+=++--.|.=... + +..-...+....++|+ +|... |++.+. +.|||.+|....|.+|+.
T Consensus 80 k~Gk~I~~P~Ydf~~h-~-R~~~~~~i~p~~vIIv----EGi~~l~~~~lr~l~D---lkIFvd~~~dirl~RRi~RDv~ 150 (210)
T PTZ00301 80 KSGKTVQIPQYDYVHH-T-RSDTAVTMTPKSVLIV----EGILLFTNAELRNEMD---CLIFVDTPLDICLIRRAKRDMR 150 (210)
T ss_pred HCCCCEECCCCCCCCC-C-CCCCEEEECCCCEEEE----EEEHHCCCHHHHHHHC---EEEEECCCHHHHHHHHHHHHHH
T ss_conf 7699634466555677-6-6797089668856999----7104307898997742---4577348723788998887788
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 014544899999999
Q gi|254780132|r 134 KRREDIPFNLDPDLF 148 (186)
Q Consensus 134 ~R~~e~~~~i~~r~~ 148 (186)
.||.+.+..+++-..
T Consensus 151 eRGr~~e~Vi~qy~~ 165 (210)
T PTZ00301 151 ERGRTFESVIEQYEA 165 (210)
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 758899999999996
No 21
>PRK05480 uridine kinase; Provisional
Probab=98.59 E-value=1e-06 Score=61.59 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=76.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE-EEEE----ECCCCCCCCCCCCCCHHHCCHHHH--------HHHHCCCEEEEE
Q ss_conf 999987999998999999985189817-9986----027888988334642010014554--------221027818766
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLV-MPVG----VTTRRPRVDEKQYIDYRFISQSQF--------KGWKHTGLFIET 70 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~-~~v~----~TTR~~R~~E~~g~dY~Fvs~~~F--------~~~i~~~~FiE~ 70 (186)
||-|+|+|||||||+++.|.+..+.-. .+++ |-.+...+.+..+ .+.|=..+.| -+.+++|+=++.
T Consensus 8 iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Yy~~~~~~~~~e~~-~~nfD~P~a~d~~ll~~~L~~L~~G~~v~~ 86 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELGDESIAVISQDSYYKDQSHLSMEERV-KTNYDHPDAFDHDLLIEHLKALKAGKAIEI 86 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999899977899999999998086875999554412473407886812-368788267669999999999974998756
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH-----HHHCCCCCEEEEHCCCCCHHHHHHHHH----HCCCCCHH
Q ss_conf 661287045442200233431024200254200024-----442054320000002321899998762----01454489
Q gi|254780132|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDIPF 141 (186)
Q Consensus 71 ~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~e~~~ 141 (186)
-.| ++.=|+..... ..+....++|+ +|... ++..+. +.|||.+|...+|.+|+. .||.+.+.
T Consensus 87 P~Y-df~t~~r~~~~-~~i~~~~iiIv----EGi~~l~~~~lr~~~D---lkIfid~~~d~rl~RRi~RD~~eRGr~~e~ 157 (209)
T PRK05480 87 PVY-DYTEHTRSKET-IHVEPKDVIIL----EGILLLEDERLRDLMD---IKIFVDTPLDIRLIRRLKRDVNERGRSLES 157 (209)
T ss_pred CCC-CCCCCCCCCCE-EEECCCCEEEE----ECHHHCCCHHHHHHHC---EEEEEECCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 754-45566557863-89669876999----3456406787886526---579996677789999999789997889999
Q ss_pred HHHHHHHHH-----------HHCCCEEEECC-CHHHHHHHHHH
Q ss_conf 999999986-----------53598899939-78999999999
Q gi|254780132|r 142 NLDPDLFGK-----------NHSYSFTIVNN-HLPTACRQVGL 172 (186)
Q Consensus 142 ~i~~r~~~~-----------~~~fD~iIiNd-dle~a~~~l~~ 172 (186)
.+.+-.... ....|.||-+. +-+.|.+-|..
T Consensus 158 vi~q~~~~v~p~~~~yI~P~k~~ADlII~~~~~~~va~~~i~~ 200 (209)
T PRK05480 158 VINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKA 200 (209)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCCCHHHHHHHHH
T ss_conf 9999999765769976845274240898899964599999999
No 22
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.58 E-value=6.4e-07 Score=62.77 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=74.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE-EEE----ECCCCCCCCCCCCCCHHHC-----CH---HHHHHHHCCCEEEEE
Q ss_conf 9999879999989999999851898179-986----0278889883346420100-----14---554221027818766
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVM-PVG----VTTRRPRVDEKQYIDYRFI-----SQ---SQFKGWKHTGLFIET 70 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~-~v~----~TTR~~R~~E~~g~dY~Fv-----s~---~~F~~~i~~~~FiE~ 70 (186)
||-|+|+|||||||+++.|.+..+.... +++ |-.+.+.+.+..+ .+.|= .- .+.-...++|+-+..
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~yy~~~~~~~~~~~~-~~~fd~p~a~d~~~l~~~L~~L~~g~~i~~ 79 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERK-NNNYDHPDAFDFDLLISHLQDLKNGKSVEI 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9898899988599999999998099985899788888798604387843-678789226449999999999864897612
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH-----HHHCCCCCEEEEHCCCCCHHHHHHHHH----HCCCCCHH
Q ss_conf 661287045442200233431024200254200024-----442054320000002321899998762----01454489
Q gi|254780132|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDIPF 141 (186)
Q Consensus 71 ~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~e~~~ 141 (186)
-.|. +.=+.....- ..+....++|+ +|.-. ++..+. +.|||.+|....+.+|+. .||.+.+.
T Consensus 80 p~Yd-~~t~~r~~~~-~~i~~~~iiIv----EGi~~l~~~~lr~~~D---~kIfid~~~d~rl~Rri~RD~~eRg~~~~~ 150 (198)
T cd02023 80 PVYD-FKTHSRLKET-VTVYPADVIIL----EGILALYDKELRDLMD---LKIFVDTDADVRLIRRIERDIVERGRDLES 150 (198)
T ss_pred CCEE-CCCCCCCCCC-EEECCCCEEEE----ECHHHCCCHHHHHHHH---CEEEEECCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 3100-3457546772-79658865998----2534306888886740---237861789999999998769885899999
Q ss_pred HHHHHHHH---H--------HHCCCEEEECC-CHHHHHHHH
Q ss_conf 99999998---6--------53598899939-789999999
Q gi|254780132|r 142 NLDPDLFG---K--------NHSYSFTIVNN-HLPTACRQV 170 (186)
Q Consensus 142 ~i~~r~~~---~--------~~~fD~iIiNd-dle~a~~~l 170 (186)
.+.+-... . ....|.+|-|. +-+.+...|
T Consensus 151 v~~~~~~~v~p~~~~~i~P~k~~ADlIi~~~~~~~~~~~~i 191 (198)
T cd02023 151 VINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLI 191 (198)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHCCCEEECCCCCCCHHHHHH
T ss_conf 99999986078799865241514738978999862199999
No 23
>PRK06696 uridine kinase; Validated
Probab=98.56 E-value=4e-07 Score=63.97 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=67.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCE--EEEEE-----ECCCCCCC--CCCCCCCHHH-------CCHHHHHHHHCCCEE
Q ss_conf 99998799999899999998518981--79986-----02788898--8334642010-------014554221027818
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYL--VMPVG-----VTTRRPRV--DEKQYIDYRF-------ISQSQFKGWKHTGLF 67 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~--~~~v~-----~TTR~~R~--~E~~g~dY~F-------vs~~~F~~~i~~~~F 67 (186)
+|-|.||||||||||+++|.+....- ...+- |.-+..|. |-.+...||. .-++-+..+-..|..
T Consensus 28 ~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~g~~~~~~~~~d~~D~~~l~~~ll~pL~~~~~~ 107 (227)
T PRK06696 28 RVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRRGRESARGYYEDAYDYTAFRELLLKPLGPNGDR 107 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99977899878799999999999746994899715443473777765166774434754105899999998663158980
Q ss_pred EEEEE-ECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCC-CEEEEHCCCCCHHHHHHHHHHCCCCC---HHH
Q ss_conf 76666-12870454422002334310242002542000244420543-20000002321899998762014544---899
Q gi|254780132|r 68 IETTK-VRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYED-QVTSIFIAPPSEAELIQRRIKRREDI---PFN 142 (186)
Q Consensus 68 iE~~~-~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~-~~~~IfI~pps~~~L~~RL~~R~~e~---~~~ 142 (186)
++.. .+++.-+.+...-...+..+. |+++ +|.--++..+.. --+.||+.++ .++..+|...|..+. ..+
T Consensus 108 -~~~~~~~D~~td~~~~~~~~~~p~~~--VlIv--eG~~ll~~elr~~~D~~v~ld~~-~~~~~~R~~~Rd~~~~g~~~~ 181 (227)
T PRK06696 108 -QYRTASHDLKTDIPVHNEPLMAAPNA--VLIV--DGTFLLRKELRDLWDYKIFLDTD-FEESRRRGAKRDTEAFGSYEE 181 (227)
T ss_pred -EEEECCCCCCCCCCCCCCCEECCCCC--EEEE--ECHHHCCHHHHHCCCEEEEEECC-HHHHHHHHHHHHHHHHCCCHH
T ss_conf -58411246335754568716469980--8999--25564665577307489999799-999988766532544168378
Q ss_pred HH----HHHHHHHH----------CCCEEEECCCHH
Q ss_conf 99----99998653----------598899939789
Q gi|254780132|r 143 LD----PDLFGKNH----------SYSFTIVNNHLP 164 (186)
Q Consensus 143 i~----~r~~~~~~----------~fD~iIiNddle 164 (186)
.. .|...+.. .-|.+|.|+|++
T Consensus 182 ~~~~~~~ry~pa~~~Y~~~~~P~~~Advvv~n~d~~ 217 (227)
T PRK06696 182 AEKMYLERYHPACKLYIDEHNPKECADVVFDNSDPA 217 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCC
T ss_conf 999999876389999864168378385999799989
No 24
>PRK01184 hypothetical protein; Provisional
Probab=98.55 E-value=6.2e-07 Score=62.85 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=82.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 199998799999899999998518981799-8602788898833464201001455422102781876666128704544
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~-v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
.+|.|+|+.||||+|+++-+ ++. ++..+ -+-.-|. .=...|.. .+++.+...-.. .-+-+|.-+ ..
T Consensus 2 ~iIGlTG~iGSGKstva~i~-~e~-G~~vi~~~Divr~--~v~~~g~~---~~~~~~~~~~~~-----lR~~~G~~~-~a 68 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSKIA-REL-GIPVVVMGDVIRE--EVKKRGLP---PTDENIGKVATD-----LRKELGMDA-VA 68 (183)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHC-CCEEEECCHHHHH--HHHHCCCC---CCHHHHHHHHHH-----HHHHHCCHH-HH
T ss_conf 39999689988789999999-977-9939986077899--99983899---977899999999-----998719558-99
Q ss_pred CCCHHHHHHHCC-CCCCC-C-CCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCC----CHHHHHHHHHH-----
Q ss_conf 220023343102-42002-5-420002444205432000000232189999876201454----48999999998-----
Q gi|254780132|r 82 KEDINNPMEHGY-DILLI-L-THQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRED----IPFNLDPDLFG----- 149 (186)
Q Consensus 82 ~~~i~~~~~~g~-~~il~-i-d~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e----~~~~i~~r~~~----- 149 (186)
+..++.+...+. .|+++ + .+.-+..+++.++ ..+.|.|.+| .+.-.+||.+|+.. +.++...|..+
T Consensus 69 ~~~~~~i~~~~~~~~vidgir~~~E~~~~~~~~~-~~~li~V~A~-~~~R~eRl~~R~r~~D~~s~e~f~~rd~~E~~~~ 146 (183)
T PRK01184 69 IRTVPKIRELGSELVVVDGVRGDAEVEYFRKEFE-DFILVAIHAP-PETRFERLKKRGRSDDPKTWEELRERDERELSWG 146 (183)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC-CEEEEEEECC-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999703798289816787899999997469-8499999898-8899999984699889667999999999874467
Q ss_pred ---HHHCCCEEEECC-CHHHHHHHHHHHHHHHHHCC
Q ss_conf ---653598899939-78999999999999997301
Q gi|254780132|r 150 ---KNHSYSFTIVNN-HLPTACRQVGLIREFVKRGK 181 (186)
Q Consensus 150 ---~~~~fD~iIiNd-dle~a~~~l~~Iie~l~~~~ 181 (186)
.-..-||+|.|+ ++++..+++..+++.+.+++
T Consensus 147 i~~~i~~AD~vI~N~gsleel~~~v~~~l~~i~~~~ 182 (183)
T PRK01184 147 IGEAIALADYMIVNDCTLEEFKARVRKLLEEILSSR 182 (183)
T ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 778998799999879989999999999999997069
No 25
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.51 E-value=8.6e-08 Score=68.04 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=59.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECC
Q ss_conf 99998799999899999998518981799860278889883346420100145542210278187666612870454422
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~ 83 (186)
|||++|+|||||||+++.|.++. +..+. +|=++| +++.-.+| ..|.=+.-..-..+.......
T Consensus 1 liiv~GvsGsGKSTia~~La~~l-g~~~i-------------~~D~~h--~~~n~~km-~~G~pL~d~dr~~wl~~l~~~ 63 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-GAPFI-------------DGDDLH--PPANIAKM-AAGIPLNDEDRWPWLQALTDA 63 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCCEE-------------CCCCCC--CHHHHHHH-HCCCCCCCCCHHHHHHHHHHH
T ss_conf 98999189999999999999971-99564-------------154335--47689998-679998852378999999999
Q ss_pred CHHHHHHHCCCCCCCCCCCHHH-HHHHCC-----CCCEEEEHCCCCCHHHHHHHHHHCCC
Q ss_conf 0023343102420025420002-444205-----43200000023218999987620145
Q gi|254780132|r 84 DINNPMEHGYDILLILTHQGLA-PLKKLY-----EDQVTSIFIAPPSEAELIQRRIKRRE 137 (186)
Q Consensus 84 ~i~~~~~~g~~~il~id~~G~~-~lk~~~-----~~~~~~IfI~pps~~~L~~RL~~R~~ 137 (186)
........|..+|+++. ..+ ..+..+ ..++..||+.+ +.++|.+|+..|..
T Consensus 64 ~~~~~~~~g~~vVv~cS--aLk~~yR~~l~~~~~~~~v~fi~L~~-~~~~l~~Rl~~R~~ 120 (150)
T cd02021 64 LLAKLASAGEGVVVACS--ALKRIYRDILRGGAANPRVRFVHLDG-PREVLAERLAARKG 120 (150)
T ss_pred HHHHHHHCCCCEEEEEH--HHHHHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCC
T ss_conf 99999844998799843--32399999999527689858999869-99999999984635
No 26
>PRK04182 cytidylate kinase; Provisional
Probab=98.47 E-value=1.2e-06 Score=61.07 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=77.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 99998799999899999998518981799-86027888988334642010014554221027818766661287045442
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~-v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
+|.|+||+||||+|+++.|.++.. +.+. ..-.-|.. .+..| ++.++|.+..+++.-+ .. ...
T Consensus 2 ~ItI~g~~GSGk~tIak~LA~~lg-~~~~d~g~i~r~~--a~~~g-----~~~~~~~~~~e~~~~i-----d~----~~~ 64 (178)
T PRK04182 2 RITISGPPGSGKTTVARLLAEKLG-LKLVSAGDIFREL--ARERG-----MSLEEFNKYAEEDPEI-----DK----EID 64 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CEEECHHHHHHHH--HHHCC-----CCHHHHHHHHHCCHHH-----HH----HHH
T ss_conf 899958998887999999999959-9387212999999--99859-----9999999998519268-----99----999
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHH----HHHHHHH--------
Q ss_conf 2002334310242002542000244420543200000023218999987620145448999----9999986--------
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNL----DPDLFGK-------- 150 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i----~~r~~~~-------- 150 (186)
..+.+... +..||++- -++..+-.. ...+.|||.+| .+...+|+.+|..-+.++. ..|....
T Consensus 65 ~~~~~~a~-~~~~Vi~G--R~~~~il~~--~~~l~ifl~A~-~e~R~~Ri~~r~~~~~~~a~~~i~~rd~~~~~r~~~~y 138 (178)
T PRK04182 65 RRQLELAK-RGNVVLEG--RLAGWIVKN--YADLKIYLKAP-LEVRAKRIAEREGISVEEALEETIEREESEAKRYLEYY 138 (178)
T ss_pred HHHHHHHH-CCCEEEEC--CCCCEEECC--CCCEEEEEECC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999985-39989983--888769727--98779999899-99999999973299999999999998999999999860
Q ss_pred ------HHCCCEEEECC--CHHHHHHHHHHHHHHHHHCC
Q ss_conf ------53598899939--78999999999999997301
Q gi|254780132|r 151 ------NHSYSFTIVNN--HLPTACRQVGLIREFVKRGK 181 (186)
Q Consensus 151 ------~~~fD~iIiNd--dle~a~~~l~~Iie~l~~~~ 181 (186)
...||.+|... +++++++.|...++.+-+.+
T Consensus 139 ~~~~~d~~~ydl~Idts~l~~d~vv~~I~~~i~k~l~~~ 177 (178)
T PRK04182 139 GIDIDDLSIYDLVINTSKWSPEEVFEIILAAIDKLLLAK 177 (178)
T ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 899775310748998999999999999999999998447
No 27
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.46 E-value=7.1e-06 Score=56.42 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE--ECCCCCCCCC-CCCCCHHHCCHHHHHHHHCCCEEEEE-EEECC
Q ss_conf 719999879999989999999851898--179986--0278889883-34642010014554221027818766-66128
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY--LVMPVG--VTTRRPRVDE-KQYIDYRFISQSQFKGWKHTGLFIET-TKVRD 75 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~--~~~~v~--~TTR~~R~~E-~~g~dY~Fvs~~~F~~~i~~~~FiE~-~~~~g 75 (186)
||||+|-|+|-||||||++.|....+. +.+++= .-..|+|... .+|.. |. +..-++ +....
T Consensus 2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--------~~-----~~~~~~~g~~~~ 68 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--------FD-----GDGGVSPGPEFR 68 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--------CC-----CCCCCCCCHHHH
T ss_conf 74999868998988999999998476756884185898867631368754223--------48-----776635415699
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCCCH---HHHHHHC-CCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHH---H
Q ss_conf 7045442200233431024200254200---0244420-5432000000232189999876201454489999999---9
Q gi|254780132|r 76 EYYGYLKEDINNPMEHGYDILLILTHQG---LAPLKKL-YEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDL---F 148 (186)
Q Consensus 76 ~~YGts~~~i~~~~~~g~~~il~id~~G---~~~lk~~-~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~---~ 148 (186)
-.|.--..+|....++|.++|+|-=.-+ .....+. -+..++.|=|.+| .+++++|=..|++-..- .+++- .
T Consensus 69 ~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~-l~~l~~RE~~RgDR~~G-~A~~q~~~V 146 (175)
T cd00227 69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG-QARKQARVV 146 (175)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC-HHHHHHHHH
T ss_conf 9999999999999977998898631238088999999857992799998789-99999998745899964-678899984
Q ss_pred HHHHCCCEEEEC--CCHHHHHHHHH
Q ss_conf 865359889993--97899999999
Q gi|254780132|r 149 GKNHSYSFTIVN--NHLPTACRQVG 171 (186)
Q Consensus 149 ~~~~~fD~iIiN--ddle~a~~~l~ 171 (186)
.....||+.|.- ...++|.++|.
T Consensus 147 H~~~~YDleVDTs~~sp~eCA~~I~ 171 (175)
T cd00227 147 HAGVEYDLEVDTTHKTPIECARAIA 171 (175)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 3599885687799999999999999
No 28
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.46 E-value=6.1e-07 Score=62.91 Aligned_cols=151 Identities=18% Similarity=0.269 Sum_probs=95.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 99987999998999999985189817998602788--8988334642010014554221027818766661287045442
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRR--PRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~--~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
+-+.||+||||-|.+.++.++++..+.+--=-=|. .|.|-.+|. --+.+|++|+-+=.. ++.
T Consensus 2 ~FvLGGPGSGKGTQCa~Iv~~f~~~HLSAGDLLR~E~~R~GSe~g~--------lI~~~IkeG~IVPs~--------VTv 65 (189)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGYVHLSAGDLLRAEIKREGSENGE--------LIESYIKEGKIVPSE--------VTV 65 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCC--------HHHHHHHCCCEEHHE--------EEH
T ss_conf 7763698987567899999853946880747889986104788850--------377441158311122--------324
Q ss_pred CCHHHHHHHCC--CCCCCCCCCHH-----------HHH-HHCCCCC-EEEEHCCCCCHHHHHHHHHHCC------CCCHH
Q ss_conf 20023343102--42002542000-----------244-4205432-0000002321899998762014------54489
Q gi|254780132|r 83 EDINNPMEHGY--DILLILTHQGL-----------APL-KKLYEDQ-VTSIFIAPPSEAELIQRRIKRR------EDIPF 141 (186)
Q Consensus 83 ~~i~~~~~~g~--~~il~id~~G~-----------~~l-k~~~~~~-~~~IfI~pps~~~L~~RL~~R~------~e~~~ 141 (186)
.=+++++.+.. .-.|-|| |. +.+ ......+ ++++|+..| .+++.+|+++|+ +|..+
T Consensus 66 ~LL~kai~~~~W~~~~FLID--GFPRN~eN~~~W~~~~P~~kv~~~~alVlF~dC~-e~~m~~R~l~Rg~~SGR~DDN~e 142 (189)
T TIGR01359 66 ELLKKAIKEDGWSSKKFLID--GFPRNEENLEAWEKLMPDNKVNVKFALVLFFDCP-EEVMIKRLLKRGQTSGRVDDNIE 142 (189)
T ss_pred HHHHHHHHHCCCCCCCEEEC--CCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECC-CCEEEEEECCCCCCCCCCCCCHH
T ss_conf 58887776315678823662--5788887888898617877612026789998679-71476443147894786107177
Q ss_pred HHHHHHHHHHHC-------C---C-EEEEC--CCHHHHHHHHHHHH
Q ss_conf 999999986535-------9---8-89993--97899999999999
Q gi|254780132|r 142 NLDPDLFGKNHS-------Y---S-FTIVN--NHLPTACRQVGLIR 174 (186)
Q Consensus 142 ~i~~r~~~~~~~-------f---D-~iIiN--ddle~a~~~l~~Ii 174 (186)
.|.+|+..+..+ | + ..-|| .++|..+++|+.|.
T Consensus 143 sl~KR~~~y~~~t~piIe~f~~~~kv~~i~a~~~ve~Vf~~v~~~f 188 (189)
T TIGR01359 143 SLKKRFRTYNEETLPIIEYFENKGKVKEINAEGSVEEVFEDVEKIF 188 (189)
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 8888866540168302100002795798279999889999999970
No 29
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.46 E-value=6.1e-07 Score=62.90 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--HHHC--CHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 719999879999989999999851898179986027888988334642--0100--145542210278187666612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~d--Y~Fv--s~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
++=|+|+|++||||||+.+.|.++. ++.+.= |-.-.. +..|.. -.|- -++.|.+.-.
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~L-~~~fiD--~D~~Ie--~~~g~si~~if~~~Ge~~FR~~E~-------------- 64 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKRL-GYEFID--TDHLIE--ARAGKSIPEIFEEEGEAGFRELEE-------------- 64 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCC--CCHHHH--HHHCCCHHHHHHHHCHHHHHHHHH--------------
T ss_conf 9808988899999899999999995-969023--988999--761699999999858899999999--------------
Q ss_pred EEEECCCHHH-------HHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC-------CCCHHHH
Q ss_conf 4544220023-------3431024200254200024442054320000002321899998762014-------5448999
Q gi|254780132|r 78 YGYLKEDINN-------PMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDIPFNL 143 (186)
Q Consensus 78 YGts~~~i~~-------~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~e~~~~i 143 (186)
+.+.+ ++..|--+++ +++....|++ ..++||+.+ +.+.+.+|+.+.. .+..+.+
T Consensus 65 -----~~l~~l~~~~~~VIstGGG~v~--~~~~~~~L~~----~g~vV~L~~-~~e~l~~Rl~~~~~RPll~~~~~~~~l 132 (175)
T PRK00131 65 -----EVLAELLQRHNLVISTGGGAVL--REENRALLRE----RGTVVYLDA-SFEELLRRLARDRNRPLLQTEDPKEKL 132 (175)
T ss_pred -----HHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHC----CCCEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf -----9999651479859974898226--8899999981----693799857-999999986489999878899869999
Q ss_pred H----HHHHHHHHCCCEEEE--CCCHHHHHHHHHHHHHHH
Q ss_conf 9----999986535988999--397899999999999999
Q gi|254780132|r 144 D----PDLFGKNHSYSFTIV--NNHLPTACRQVGLIREFV 177 (186)
Q Consensus 144 ~----~r~~~~~~~fD~iIi--Nddle~a~~~l~~Iie~l 177 (186)
. +|..-++...|++|. |.++++++++|...++..
T Consensus 133 ~~l~~~R~~~Y~~~Ad~~Idt~~~s~~ei~~~Ii~~L~~~ 172 (175)
T PRK00131 133 RALYEERDPLYEEVADLTIETDRRSPEEVVNEILELLELL 172 (175)
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999998975389999899999999999999999998
No 30
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.42 E-value=3.9e-06 Score=57.99 Aligned_cols=167 Identities=19% Similarity=0.217 Sum_probs=84.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC-----CCCCCCCCCCCCHHHCCHHHHHHHHCC--C------EEEEE
Q ss_conf 9999879999989999999851898179986027-----888988334642010014554221027--8------18766
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT-----RRPRVDEKQYIDYRFISQSQFKGWKHT--G------LFIET 70 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT-----R~~R~~E~~g~dY~Fvs~~~F~~~i~~--~------~FiE~ 70 (186)
+|.|.|.||+||+||+-.|.... ++..+++.-| |.-...|.+-. -|+-|=+..+.+... + .|.++
T Consensus 94 iILigGtsGvGKSTlA~~LA~rL-gI~~visTD~IREVmR~~~~~el~P~-Lh~SSy~Awk~l~~~~~~~~~~I~Gf~~Q 171 (306)
T PRK04220 94 IILIGGASGVGTSTIAFELASRL-GIRSVIGTDSIREVMRKIISKELLPT-LHESSYTAWKSLRRPPWEEPDHILGFERH 171 (306)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHHHCCCCCCCCH-HHCCCHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99985899887899999999970-98834222169999985248301751-32275131002367877865799999999
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH----HHHCC--CCCEEEEHCCCCCHHHHHHHHHHCCCCCHHH--
Q ss_conf 661287045442200233431024200254200024----44205--4320000002321899998762014544899--
Q gi|254780132|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LKKLY--EDQVTSIFIAPPSEAELIQRRIKRREDIPFN-- 142 (186)
Q Consensus 71 ~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~----lk~~~--~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~-- 142 (186)
++.= .=|. .+-|+.++..|.++|++ |+.- +++.+ ..+++.+.+..++.+..++|+..|...+...
T Consensus 172 ~~~V--~~gI-~aiI~Ra~~eg~slIIE----GVHlvP~~i~~~~~~~~~vi~fll~i~dEe~H~~RF~~Ra~~~~R~~~ 244 (306)
T PRK04220 172 VEPV--LVGV-EAVIERALKEGISVIIE----GVHIVPGFIKEKYLNMPNVFMFVLTLSDEETHKARFYARARVSKRPAE 244 (306)
T ss_pred HHHH--HHHH-HHHHHHHHHCCCCEEEE----EECCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCHH
T ss_conf 9999--9999-99999999729968998----430377887777643883899999978889999999985044789878
Q ss_pred -----------HHHHHHHHHHCCCE-EEECCCHHHHHHHH-HHHHHHHHH
Q ss_conf -----------99999986535988-99939789999999-999999973
Q gi|254780132|r 143 -----------LDPDLFGKNHSYSF-TIVNNHLPTACRQV-GLIREFVKR 179 (186)
Q Consensus 143 -----------i~~r~~~~~~~fD~-iIiNddle~a~~~l-~~Iie~l~~ 179 (186)
|+.-+...+.+++. +|.|.|++.+++.+ ..|++.+..
T Consensus 245 rYl~~f~~IR~IQ~yLv~~A~~~~vPiI~N~~id~tv~~i~~~i~~r~~~ 294 (306)
T PRK04220 245 RYLKHFDEIREIQDYIVEKAKEHGVPVIENVSIEETVDKILEIITERLSE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99997999999999999998880998106866899999999999999999
No 31
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.41 E-value=2.3e-07 Score=65.46 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=40.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE---------EEECCCCCCCCCCCCCCHHHCC
Q ss_conf 97199998799999899999998518981799---------8602788898833464201001
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMP---------VGVTTRRPRVDEKQYIDYRFIS 54 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~---------v~~TTR~~R~~E~~g~dY~Fvs 54 (186)
+.++|+|+||.|||||.|+-+|.++.+.--.+ .+--|=+|...|..|+.||+++
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~ 65 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLID 65 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEE
T ss_conf 997799989886589999999999879989941268874999868899999998189812434
No 32
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.41 E-value=4.3e-07 Score=63.81 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 9999879999989999999851898179986-027888988334642010014554221027818766661287045442
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVG-VTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~-~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
+|+|+||+||||||+++.|.++.. +.. || =-=|.. -+.-|-| +.+.+. --|.-+.-.. +-+
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls-l~~-iSaG~iRel--A~~~Gld---l~E~~~--------aee~~eIDk~---iD~ 63 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-LKL-ISAGDIREL--AEKMGLD---LAESKY--------AEENPEIDKK---IDR 63 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCE-ECCCHHHHH--HHHCCCC---HHHHHH--------HCCCCCCCHH---HHH
T ss_conf 788735896864789999998639-831-202007889--8642988---777344--------3058631167---537
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHH---CCCCCEEEEHCCCCCHHHHHHHHHHCCC
Q ss_conf 200233431024200254200024442---0543200000023218999987620145
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLAPLKK---LYEDQVTSIFIAPPSEAELIQRRIKRRE 137 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~---~~~~~~~~IfI~pps~~~L~~RL~~R~~ 137 (186)
.+.+.+..-+++|++=...|= +++ .+.+ +.||+.+| +++-.+|..+|..
T Consensus 64 -~~~E~A~~~~nvvlEsrlagW--~~~~nG~yaD--~~iyL~A~-levRA~RIA~Re~ 115 (173)
T TIGR02173 64 -RIREIAEKEKNVVLESRLAGW--ILKKNGEYAD--VKIYLKAP-LEVRARRIAKREN 115 (173)
T ss_pred -HHHHHHCCCCCEEEEEHHHHH--HCCCCCCCCC--EEEEECCC-HHHHHHHHHHCCC
T ss_conf -885543048966885205433--1157889675--67886088-3332433211368
No 33
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.40 E-value=5.1e-07 Score=63.37 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=78.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECC
Q ss_conf 999879999989999999851898179986027888988334-6420100145542210278187666612870454422
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ-YIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~-g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~ 83 (186)
|+|.||+||||+|.++.|.+++.-.+++..--=|. |+. +.. --.+....+++|.++--..+.+- -.+
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~~is~GdllR~----~i~~~s~----~g~~i~~~~~~G~lVpd~i~~~l----v~~ 70 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA----AIKAGTE----LGKEAKSYMDAGELVPDEIVIGL----VKE 70 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHH----HHHCCCH----HHHHHHHHHHCCCCCCHHHHHHH----HHH
T ss_conf 99989999987999999999869917868899999----9873998----89999999977987788999999----999
Q ss_pred CHHHHHHHCCCCCCCCCCCHHHH---HHH---CCCCC-EEEEHCCCCCHHHHHHHHHHC---------------------
Q ss_conf 00233431024200254200024---442---05432-000000232189999876201---------------------
Q gi|254780132|r 84 DINNPMEHGYDILLILTHQGLAP---LKK---LYEDQ-VTSIFIAPPSEAELIQRRIKR--------------------- 135 (186)
Q Consensus 84 ~i~~~~~~g~~~il~id~~G~~~---lk~---~~~~~-~~~IfI~pps~~~L~~RL~~R--------------------- 135 (186)
.+.+. ...+-.|+|==|.-..| +.. ..+.. ..+|++..| .+++.+||..|
T Consensus 71 ~l~~~-~~~~G~IlDGfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 148 (215)
T PRK00279 71 RLAQP-DCANGFLLDGFPRTIPQAEALDEMLKEAGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPKVEG 148 (215)
T ss_pred HHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98365-65570798689998799999999998649986889999688-99999998611567556764554578988666
Q ss_pred ------------CCCCHHHHHHHHHHHHH-------CC----CEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf ------------45448999999998653-------59----889993--9789999999999999
Q gi|254780132|r 136 ------------REDIPFNLDPDLFGKNH-------SY----SFTIVN--NHLPTACRQVGLIREF 176 (186)
Q Consensus 136 ------------~~e~~~~i~~r~~~~~~-------~f----D~iIiN--ddle~a~~~l~~Iie~ 176 (186)
.+|+++.+.+|+..+.. .| -++.+| .++++.+++|..+++.
T Consensus 149 ~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pvi~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 214 (215)
T PRK00279 149 KCDVTGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 455433202579998699999999999998889999998179789998989989999999999844
No 34
>PRK03839 putative kinase; Provisional
Probab=98.39 E-value=4e-06 Score=57.92 Aligned_cols=134 Identities=17% Similarity=0.161 Sum_probs=65.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEE-EEEEECCCEEEEEC
Q ss_conf 99998799999899999998518981799860278889883346420100145542210278187-66661287045442
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI-ETTKVRDEYYGYLK 82 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~Fi-E~~~~~g~~YGts~ 82 (186)
+|+|+|.+|+||||+++.|.++. ++... + -.++ ++...+. +|. .-+-+..
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~l-g~~~i-~--------------------v~~l---a~~~~~~~~~d----~~~~iD~ 52 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKL-GYEYV-N--------------------LRDF---ALEKGIGEEKD----DELEIDV 52 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCEEE-E--------------------HHHH---HHHCCCCCCCC----CCCCCCH
T ss_conf 89997899999899999999976-98798-7--------------------9999---99839986767----7504659
Q ss_pred CCHHHHHH---HCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHH----HHHHH-----HH
Q ss_conf 20023343---10242002542000244420543200000023218999987620145448999----99999-----86
Q gi|254780132|r 83 EDINNPME---HGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNL----DPDLF-----GK 150 (186)
Q Consensus 83 ~~i~~~~~---~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i----~~r~~-----~~ 150 (186)
+.+.+.++ .++.++++-+ +-..++... +|-+.. +..+|.+||.+||= +++.| +..++ .+
T Consensus 53 d~l~~~~~~~~~~~~~ivd~H------~~h~~p~D~-VIVLR~-~P~iL~~RL~~RgY-s~~KI~ENveaEil~vil~Ea 123 (180)
T PRK03839 53 DELAYFVEEEFKGKNVVLDGH------LSHLMPADL-VIVLRA-HPKLIAERLKERGY-SKKKIGENVEAELVDVILIEA 123 (180)
T ss_pred HHHHHHHHHHHCCCCEEEEEE------CCCCCCCCE-EEEEEC-CHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998734898899864------314636877-999978-86999999997699-989999999999999999999
Q ss_pred HHCCCEEEE----CCCHHHHHHHHHHHHH
Q ss_conf 535988999----3978999999999999
Q gi|254780132|r 151 NHSYSFTIV----NNHLPTACRQVGLIRE 175 (186)
Q Consensus 151 ~~~fD~iIi----Nddle~a~~~l~~Iie 175 (186)
...|+.++. |...++.+.++..+++
T Consensus 124 ~e~~~~~~eidtt~~~pe~v~~~I~~~i~ 152 (180)
T PRK03839 124 LEEHENVIEVDTTNKTPEEVVEEILNLIK 152 (180)
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98439889998999999999999999995
No 35
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=98.37 E-value=3.1e-07 Score=64.69 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=77.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC----EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE
Q ss_conf 999879999989999999851898----1799860278889883346420100145542210278187666612870454
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEY----LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~----~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt 80 (186)
|||+|+|||||||++.+|+++..+ +.|+ ||=|.| .++.-++| .+|.=|-=.-=.+|+ ..
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yi-------------eGDdLH--P~~Ni~KM-s~GiPL~DdDR~pWL-~~ 63 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYI-------------EGDDLH--PAANIEKM-SRGIPLNDDDRWPWL-KN 63 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC-------------CCCCCC--CHHHHHHH-CCCCCCCCCCCHHHH-HH
T ss_conf 96760278628899999999854315788756-------------886667--87779873-178888701204379-99
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCC-----------CEEEEHCCCCCHHHHHHHHHHCCC--------CCHH
Q ss_conf 422002334310242002542000244420543-----------200000023218999987620145--------4489
Q gi|254780132|r 81 LKEDINNPMEHGYDILLILTHQGLAPLKKLYED-----------QVTSIFIAPPSEAELIQRRIKRRE--------DIPF 141 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~-----------~~~~IfI~pps~~~L~~RL~~R~~--------e~~~ 141 (186)
...+......+++.-+..|. .++ ||+.|.+ .+-+||+.+ +.+++.+|+..|.. ++++
T Consensus 64 l~~~~~~~~~~~~~~~~~~~-CSA--LKr~YRD~LR~s~~~~~~~~~FiyL~~-~~~~~~~R~~~RkGHFMka~m~~SQf 139 (175)
T TIGR01313 64 LADALAQAAAKNKVHLVIIT-CSA--LKRKYRDILRSSLEEAEPELHFIYLSG-SKEVILKRMKSRKGHFMKADMLESQF 139 (175)
T ss_pred HHHHHHHHHHCCCCCCEEEE-EEC--CHHHHHHHHHHHHCCCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999999845774544788-401--113555665422026898437886368-98999999610789986204789999
Q ss_pred HHHHHHHHHH-HCCCEEEE-C-CCHHHHHHHH
Q ss_conf 9999999865-35988999-3-9789999999
Q gi|254780132|r 142 NLDPDLFGKN-HSYSFTIV-N-NHLPTACRQV 170 (186)
Q Consensus 142 ~i~~r~~~~~-~~fD~iIi-N-ddle~a~~~l 170 (186)
++-..- .. .+-|.+.| + ..++...++.
T Consensus 140 ~~LE~P--~~nDE~d~~~vd~~~~~e~~~~~~ 169 (175)
T TIGR01313 140 EALEEP--TANDETDVVTVDIDQPLEAVEEDC 169 (175)
T ss_pred HHHCCC--CCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 972788--888885437860688657899999
No 36
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=98.35 E-value=1.1e-06 Score=61.44 Aligned_cols=133 Identities=21% Similarity=0.183 Sum_probs=65.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE--E-E----EECC-C---CC--CC-CCCCCCCHHHCCHHHH--------HHH
Q ss_conf 9999879999989999999851898179--9-8----6027-8---88--98-8334642010014554--------221
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVM--P-V----GVTT-R---RP--RV-DEKQYIDYRFISQSQF--------KGW 61 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~--~-v----~~TT-R---~~--R~-~E~~g~dY~Fvs~~~F--------~~~ 61 (186)
||-|+|||||||||++++|.+....-.. . + -+.+ + +. -. .+....+|-|-+.+.| -..
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~ 80 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE 80 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98998998571999999999996605877641243179860410244375767651457889789662359999999999
Q ss_pred HCCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH-----HHHCCCCCEEEEHCCCCCHHHHHHHHH---
Q ss_conf 027818766661287045442200233431024200254200024-----442054320000002321899998762---
Q gi|254780132|r 62 KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI--- 133 (186)
Q Consensus 62 i~~~~FiE~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~--- 133 (186)
+++|+=++.-.|. +.=|+.... ...+....++|+ +|... ++..+. +.|||.++...+|.+|+.
T Consensus 81 Lk~g~~i~~P~Yd-f~~~~r~~~-~~~i~p~~viIv----EGi~~l~~~~ir~l~D---~kIfid~~~d~rl~RRi~RD~ 151 (196)
T pfam00485 81 LKEGGSGDKPIYN-HVTGEADPW-PELIEGADILFI----EGLHGLYDERVAQLLD---LKIYVDPDIDLELIQKIQRDM 151 (196)
T ss_pred HHCCCCEEEEEEE-CCCCCCCCC-CEECCCCCEEEE----ECHHHCCCHHHHHHHC---EEEEEECCCCHHHHHHHHHCH
T ss_conf 7089945765675-134533677-366178856999----4333303277887638---479972680199999987345
Q ss_pred -HCCCCCHHHHHH
Q ss_conf -014544899999
Q gi|254780132|r 134 -KRREDIPFNLDP 145 (186)
Q Consensus 134 -~R~~e~~~~i~~ 145 (186)
.||...+..+++
T Consensus 152 ~eRgrs~~~v~~q 164 (196)
T pfam00485 152 AERGHSLEGVTDS 164 (196)
T ss_pred HHHCCCHHHHHHH
T ss_conf 7519999999999
No 37
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.35 E-value=2.2e-06 Score=59.57 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=62.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--EEE-EEE----ECCCCCCCCCCCCCCHHHC-----CHHHHHHHH---CCCEEE
Q ss_conf 9999879999989999999851898--179-986----0278889883346420100-----145542210---278187
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY--LVM-PVG----VTTRRPRVDEKQYIDYRFI-----SQSQFKGWK---HTGLFI 68 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~--~~~-~v~----~TTR~~R~~E~~g~dY~Fv-----s~~~F~~~i---~~~~Fi 68 (186)
||-|+|||||||||++++|.+.... ... +++ |-.|.. + ...++.|- .-+.|.+.+ ++|+=+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~~~~---~-~~~~~n~D~p~a~d~~ll~~~L~~L~~g~~v 76 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKT---P-RDEDGNYDFESILDLDLLNKNLHDLLNGKEV 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---C-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 98998989778999999999998464885399954666457652---0-0014688981353499999999999779955
Q ss_pred EEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH----HHHCCCCCEEEEHCCCCCHH-HHHHHHH----HCCCCC
Q ss_conf 66661287045442200233431024200254200024----44205432000000232189-9998762----014544
Q gi|254780132|r 69 ETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEA-ELIQRRI----KRREDI 139 (186)
Q Consensus 69 E~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~-~L~~RL~----~R~~e~ 139 (186)
+.-.| ++.-|+....-.-......++|+ +|... |+..+ -+.|||.+|+.. +|.+|+. .||...
T Consensus 77 ~~P~Y-Df~t~~r~~~~~~~~~p~~vIIv----EGi~~l~~~lr~~~---D~kIfvd~~~~~~Rl~RRi~RD~~eRg~~~ 148 (179)
T cd02028 77 ELPIY-DFRTGKRRGYRKLKLPPSGVVIL----EGIYALNERLRSLL---DIRVAVSGGVHLNRLLRRVVRDIQFRGYSA 148 (179)
T ss_pred EEEEE-ECCCCCCCCCCEEEECCCCEEEE----ECHHHCCHHHHHHC---CEEEEEECCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 75420-04378606980596089978999----24343899899766---869999788368888999997797739999
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780132|r 140 PFNLDP 145 (186)
Q Consensus 140 ~~~i~~ 145 (186)
+..+.+
T Consensus 149 ~~v~~q 154 (179)
T cd02028 149 ELTILM 154 (179)
T ss_pred HHHHHH
T ss_conf 999998
No 38
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.35 E-value=6.3e-07 Score=62.81 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=28.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 7199998799999899999998518981799860278889
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPR 41 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R 41 (186)
|++|+|-|+.||||+|.++.|.+....-...+ +.||.|-
T Consensus 3 G~fIviEGiDGsGKsTq~~~L~~~L~~~g~~v-~~t~eP~ 41 (204)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLAERLEEQGRDV-VFTREPG 41 (204)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCC
T ss_conf 31999988999989999999999999679978-9986999
No 39
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=9.4e-07 Score=61.76 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCH--HHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 9719999879999989999999851898179986027888988334642010014--55422102781876666128704
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ--SQFKGWKHTGLFIETTKVRDEYY 78 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~--~~F~~~i~~~~FiE~~~~~g~~Y 78 (186)
||++|+|=|+-||||||+++.|.+....-... .++||.|..+.+.-.=...+.. +.+......=.| .+....|.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~-v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLf--aadR~~h~- 77 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK-VVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLF--AADRAQHL- 77 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH--HHHHHHHH-
T ss_conf 96299997888898899999999999982980-799868999869999999973886678889999999--99999999-
Q ss_pred EEECCCHHHHHHHCCCCCCC---------------CCCCHHHHHHHCCC---CCEEEEHCCCCCHHHHHHHHHHCCCC-C
Q ss_conf 54422002334310242002---------------54200024442054---32000000232189999876201454-4
Q gi|254780132|r 79 GYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYE---DQVTSIFIAPPSEAELIQRRIKRRED-I 139 (186)
Q Consensus 79 Gts~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~---~~~~~IfI~pps~~~L~~RL~~R~~e-~ 139 (186)
...|...+..|++||.| +++.-..++.+..+ ..-+++|+..| .++-.+|..+|+.. .
T Consensus 78 ---~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~~~~ 153 (208)
T COG0125 78 ---EEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGELRD 153 (208)
T ss_pred ---HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHCCCCCC
T ss_conf ---999788762899999878313788853530599989999999765478999889999488-8999999983277655
Q ss_pred HHHHH-----HHH----HHHHHCCC--EEEEC--CCHHHHHHHHHHHHH
Q ss_conf 89999-----999----98653598--89993--978999999999999
Q gi|254780132|r 140 PFNLD-----PDL----FGKNHSYS--FTIVN--NHLPTACRQVGLIRE 175 (186)
Q Consensus 140 ~~~i~-----~r~----~~~~~~fD--~iIiN--ddle~a~~~l~~Iie 175 (186)
..+.. ++. ......+- ++++| .++++..+++..++.
T Consensus 154 r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~ 202 (208)
T COG0125 154 RFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILK 202 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 1566778999999999999986187718999899997999999999999
No 40
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.33 E-value=1.7e-05 Score=54.11 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=75.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 19999879999989999999851898179986027888988334642010014554221027818766661287045442
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
.+|+|+|++|+||||+++.|. .. ++... + -.+|- .++|-+.++-+-.+ .|=.-.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l-g~~~i-~--------------------l~el~--~e~~~~~~~de~r~-s~~vD~ 54 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL-GYKVI-E--------------------LNELA--KENGLYTEYDELRK-SVIVDV 54 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HH-CCCEE-E--------------------HHHHH--HHCCCEECCCCCCC-EEEEEH
T ss_conf 937993799986687999999-82-98466-1--------------------99999--86697114377661-588667
Q ss_pred CCHHHHHH---HCCCCCCCCCCCHHHHHHHCCC-CCEEEEHCCCCCHHHHHHHHHHCCCCCHHHH----HHHHH-----H
Q ss_conf 20023343---1024200254200024442054-3200000023218999987620145448999----99999-----8
Q gi|254780132|r 83 EDINNPME---HGYDILLILTHQGLAPLKKLYE-DQVTSIFIAPPSEAELIQRRIKRREDIPFNL----DPDLF-----G 149 (186)
Q Consensus 83 ~~i~~~~~---~g~~~il~id~~G~~~lk~~~~-~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i----~~r~~-----~ 149 (186)
+.+.+.++ ....+|++-.+.+ .++ .+.++| +.. ....|.+||..||= +++.| +..++ .
T Consensus 55 d~~~~~le~~~~~~~~Ivd~H~~h------l~~~~dlVvV-LR~-~p~~L~~RLk~RGy-~~eKI~ENveAEi~~vi~~E 125 (180)
T COG1936 55 DKLRKRLEELLREGSGIVDSHLSH------LLPDCDLVVV-LRA-DPEVLYERLKGRGY-SEEKILENVEAEILDVILIE 125 (180)
T ss_pred HHHHHHHHHHHCCCCEEEECHHHH------CCCCCCEEEE-ECC-CHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 999988888750588476126662------1787888999-718-98999999987699-87898877999999999999
Q ss_pred HHHCCCEEEE----CCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6535988999----397899999999999999730125
Q gi|254780132|r 150 KNHSYSFTIV----NNHLPTACRQVGLIREFVKRGKKA 183 (186)
Q Consensus 150 ~~~~fD~iIi----Nddle~a~~~l~~Iie~l~~~~~~ 183 (186)
+.+.|+-++. |.+.+++..++..|+...++.+..
T Consensus 126 A~E~~~~v~evdtt~~s~ee~~~~i~~ii~~~~~~~~g 163 (180)
T COG1936 126 AVERFEAVIEVDTTNRSPEEVAEEIIDIIGGGRKKRVG 163 (180)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99734764999789999999999999997033457888
No 41
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.30 E-value=4e-06 Score=57.98 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=58.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 99998799999899999998518981799-86027888988334642010014554221027818766661287045442
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~-v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
+|.|+||+||||||+++.|.+.+. +.++ --++=|.+- -|. | +|-++|.+.-+++--+ -+-+-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~iFR~~A-~e~-g-----msl~ef~~~AE~~p~i--------D~~iD~ 65 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-LKLVSAGTIFREMA-RER-G-----MSLEEFSRYAEEDPEI--------DKEIDR 65 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHC-CCEEECCHHHHHHH-HHC-C-----CCHHHHHHHHHCCCHH--------HHHHHH
T ss_conf 799617999970279999999829-71562127999999-983-9-----9999999987519216--------699889
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC
Q ss_conf 200233431024200254200024442054320000002321899998762014
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (186)
.. ..... ..+|+++-...|- +-+ +...+.||+.+| .++-.+|..+|.
T Consensus 66 rq-~e~a~-~~nvVlegrLA~W--i~k--~~adlkI~L~Ap-l~vRa~Ria~RE 112 (179)
T COG1102 66 RQ-KELAK-EGNVVLEGRLAGW--IVR--EYADLKIWLKAP-LEVRAERIAKRE 112 (179)
T ss_pred HH-HHHHH-CCCEEEHHHHHHH--HHC--CCCCEEEEEECC-HHHHHHHHHHHC
T ss_conf 99-99987-2895870045788--733--565468888575-999999999860
No 42
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=98.28 E-value=6.1e-06 Score=56.82 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998799999899999998518
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~ 26 (186)
||-|.||+||||||+++.|++..
T Consensus 36 lIgIaG~pGSGKSTlA~~l~~~L 58 (230)
T PRK09270 36 VVGIAGPPGAGKSTLAETLWEAL 58 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999889999999999998
No 43
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.27 E-value=5.8e-06 Score=56.95 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=81.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECC
Q ss_conf 99998799999899999998518981799860278889883346420100145542210278187666612870454422
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~ 83 (186)
-|+|+|||||||+|++++|.++++-.+.+.-. --|++-..+.. . -.+-..-++.|+++..+-++ |+-..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd---~~r~~~~~~t~---l-g~~~k~~i~~g~lv~d~i~~----~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGD---ILRAAIAERTE---L-GEEIKKYIDKGELVPDEIVN----GLVKE 70 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECCCC---CCCHHHCCCCH---H-HHHHHHHHHCCCCCCHHHHH----HHHHH
T ss_conf 79998999998899999999976997855220---11110032368---9-99999998758950417699----79999
Q ss_pred CHHHHHHHCCCCCCCCCCCH---HHHHHHC---CC-CCEEEEHCCCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHC
Q ss_conf 00233431024200254200---0244420---54-320000002321899998762014---54489999999986535
Q gi|254780132|r 84 DINNPMEHGYDILLILTHQG---LAPLKKL---YE-DQVTSIFIAPPSEAELIQRRIKRR---EDIPFNLDPDLFGKNHS 153 (186)
Q Consensus 84 ~i~~~~~~g~~~il~id~~G---~~~lk~~---~~-~~~~~IfI~pps~~~L~~RL~~R~---~e~~~~i~~r~~~~~~~ 153 (186)
.+......+ .+|++-=|.= ++.+++. ++ ..-.++.+.+|. +.+..|+..|. +|.++.+.+|+..+...
T Consensus 71 rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~ 148 (178)
T COG0563 71 RLDEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRVREDDNEETVKKRLKVYHEQ 148 (178)
T ss_pred HHHHCCCCC-EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCH-HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 997506577-29998998369999999999986399855260244778-9999997366543346789999999998754
Q ss_pred CCEE------EEC--CCHHHHHHHHHH
Q ss_conf 9889------993--978999999999
Q gi|254780132|r 154 YSFT------IVN--NHLPTACRQVGL 172 (186)
Q Consensus 154 fD~i------IiN--ddle~a~~~l~~ 172 (186)
-+-+ -++ ..+++.++++..
T Consensus 149 ~~pl~~~y~~~id~~~~i~~v~~~i~~ 175 (178)
T COG0563 149 TAPLIEYYSVTIDGSGEIEEVLADILK 175 (178)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 683477775114677889999999998
No 44
>PRK13947 shikimate kinase; Provisional
Probab=98.27 E-value=6.9e-06 Score=56.50 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC--CCC-------CCCCCCHHHCCHHHHHHHHCCCEEEEEE
Q ss_conf 9719999879999989999999851898179986027888--988-------3346420100145542210278187666
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRP--RVD-------EKQYIDYRFISQSQFKGWKHTGLFIETT 71 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~--R~~-------E~~g~dY~Fvs~~~F~~~i~~~~FiE~~ 71 (186)
|.+ |+|+|+.||||||+.+.|.+.. ++.|.= |-+-. +.| +..|.+ .|.++-.. .+.
T Consensus 1 mkn-I~LiG~mGsGKTtiGk~La~~L-~~~fiD--~D~~Ie~~~g~sI~eIf~~~GE~-------~FR~~E~~--~l~-- 65 (171)
T PRK13947 1 MKN-IVLIGFMGTGKTTVGKKVATTL-SFGFID--TDKEIEKMAGMTVSEIFEKDGEV-------RFRSLEKA--AVR-- 65 (171)
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHH-CCCEEE--CHHHHHHHCCCCHHHHHHHHCHH-------HHHHHHHH--HHH--
T ss_conf 985-8997999998899999999997-969898--74999988299889999984899-------99999999--999--
Q ss_pred EECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC-------CCCHHHHH
Q ss_conf 61287045442200233431024200254200024442054320000002321899998762014-------54489999
Q gi|254780132|r 72 KVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDIPFNLD 144 (186)
Q Consensus 72 ~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~e~~~~i~ 144 (186)
+... .-..++..|--+++ +.+....|++ +..+||+.+ +.+.+.+|+.... .+..+.+.
T Consensus 66 ~~~~--------~~~~VistGGG~v~--~~~n~~~l~~----~g~vi~L~~-~~~~l~~Rl~~~~~RPll~~~~~~~~l~ 130 (171)
T PRK13947 66 KAAR--------LKNLVIATGGGVVL--NPENIVQLRK----NGVLICLVA-RPEVILRRIKKKKDRPLLMVGNPEERIR 130 (171)
T ss_pred HHCC--------CCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEECC-CHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 7403--------68979978985006--9999999996----898999739-9999999972899999798998799999
Q ss_pred H----HHHHHHHCCCEEEECC--CHHHHHHHHHHHHHHHH
Q ss_conf 9----9998653598899939--78999999999999997
Q gi|254780132|r 145 P----DLFGKNHSYSFTIVNN--HLPTACRQVGLIREFVK 178 (186)
Q Consensus 145 ~----r~~~~~~~fD~iIiNd--dle~a~~~l~~Iie~l~ 178 (186)
+ |..-+ ...|++|..+ ++++.+++|....+.++
T Consensus 131 ~l~~~R~~~Y-~~Ad~~I~~~~~s~~ei~~~Ii~~~~k~k 169 (171)
T PRK13947 131 ELLKEREPFY-RFADFTIDTSDMTIDEVAEEIIKAYIKLK 169 (171)
T ss_pred HHHHHHHHHH-HHCCEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999-97698988998999999999999999720
No 45
>PRK13974 thymidylate kinase; Provisional
Probab=98.24 E-value=2.8e-06 Score=58.87 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC--CE--EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 71999987999998999999985189--81--799860278889883346420100145542210278187666612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE--YL--VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~--~~--~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
|++|++-|.-||||||.++.|.+... ++ ...--++||.|-.... |.- +. +-+........+-..++. .+
T Consensus 3 G~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~rePg~t~~-g~~---ir-~~l~~~~~~~~~~~~~e~--lL 75 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLL-GKS---LR-ELLLDTSKDNSPSPLAEL--LL 75 (212)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCH-HHH---HH-HHHHCCCCCCCCCHHHHH--HH
T ss_conf 419998899999899999999999986587535861577149999806-999---99-998066545688879999--99
Q ss_pred EEEE-----CCCHHHHHHHCCCCCCCCC------CCH---------HHHHHHCCC--CCE-EEEHCCCCCHHHHHHHHHH
Q ss_conf 4544-----2200233431024200254------200---------024442054--320-0000023218999987620
Q gi|254780132|r 78 YGYL-----KEDINNPMEHGYDILLILT------HQG---------LAPLKKLYE--DQV-TSIFIAPPSEAELIQRRIK 134 (186)
Q Consensus 78 YGts-----~~~i~~~~~~g~~~il~id------~~G---------~~~lk~~~~--~~~-~~IfI~pps~~~L~~RL~~ 134 (186)
|... ...|...+++|+++|.|== -|| ...+.+... ..| +++|+..| .++..+|...
T Consensus 76 f~AdR~e~~~~~I~paL~~G~iVI~DRY~~St~AYQg~~~g~~~~~i~~l~~~~~~~~~PDlt~~LDv~-~e~a~~R~~~ 154 (212)
T PRK13974 76 YAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEIS-VEESIRRRKN 154 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHC
T ss_conf 999999999999999983799999788323599998862699999999999987479999989997697-5889998847
Q ss_pred CCCCCH--------HHHHHHHHHHHHCCCEEEEC--CCHHHHHHHHHH-HHHHHHHC
Q ss_conf 145448--------99999999865359889993--978999999999-99999730
Q gi|254780132|r 135 RREDIP--------FNLDPDLFGKNHSYSFTIVN--NHLPTACRQVGL-IREFVKRG 180 (186)
Q Consensus 135 R~~e~~--------~~i~~r~~~~~~~fD~iIiN--ddle~a~~~l~~-Iie~l~~~ 180 (186)
|+.+.- ..+........++..+++++ .++++..++|.. |.+.+++.
T Consensus 155 ~~~dr~e~e~~~f~~kVr~~y~~la~~~~~~~IDa~~~ieeV~~~I~~~i~~~~~~~ 211 (212)
T PRK13974 155 RKPDRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK 211 (212)
T ss_pred CCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 763431016199999999999998473987999899999999999999999997347
No 46
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.23 E-value=4.1e-06 Score=57.87 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=47.8
Q ss_pred EEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCCCEEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf 00000232189999876201454489999999986------53598899939-789999999999999973
Q gi|254780132|r 116 TSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK------NHSYSFTIVNN-HLPTACRQVGLIREFVKR 179 (186)
Q Consensus 116 ~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~------~~~fD~iIiNd-dle~a~~~l~~Iie~l~~ 179 (186)
.+|+|.+| .+.-.+|+.+|+.-+.+.+.+|+... ...-|++|.|+ +++...+++..|++.+.+
T Consensus 128 ~vi~V~a~-~~~r~~Rl~~R~~~~~~~~~~r~~~Q~~~~~k~~~aD~vI~N~~s~e~l~~qi~~il~~i~~ 197 (199)
T PRK00081 128 RVLVVDVP-PEIQLERLMARDGLSEEEAEAILASQMSREEKLARADDVIDNNGDLEDLRKQVERLLAELLK 197 (199)
T ss_pred EEEEEECC-HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 57999869-99999999974899899999999958998999996999998999999999999999999996
No 47
>KOG3354 consensus
Probab=98.22 E-value=9.3e-07 Score=61.79 Aligned_cols=143 Identities=18% Similarity=0.287 Sum_probs=72.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECC
Q ss_conf 99998799999899999998518981799860278889883346420100145542210278187666612870454422
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~ 83 (186)
.|+++|+||+||+|+.+.|.+... +.| +||-||| +.+.-++|.+ |-=+--..-.+|+--+. .
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~-~~F-------------~dgDd~H--p~~NveKM~~-GipLnD~DR~pWL~~i~-~ 75 (191)
T KOG3354 14 VIVVMGVSGSGKSTIGKALSEELG-LKF-------------IDGDDLH--PPANVEKMTQ-GIPLNDDDRWPWLKKIA-V 75 (191)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC-CCC-------------CCCCCCC--CHHHHHHHHC-CCCCCCCCCCHHHHHHH-H
T ss_conf 599983588774459999999858-862-------------4555579--8788998836-99888532117999999-9
Q ss_pred CHHHHHHHCCCCCCCCCCCHHHHHHHCC----------------C-CCEEEEHCCCCCHHHHHHHHHHCCCC-CHH-HHH
Q ss_conf 0023343102420025420002444205----------------4-32000000232189999876201454-489-999
Q gi|254780132|r 84 DINNPMEHGYDILLILTHQGLAPLKKLY----------------E-DQVTSIFIAPPSEAELIQRRIKRRED-IPF-NLD 144 (186)
Q Consensus 84 ~i~~~~~~g~~~il~id~~G~~~lk~~~----------------~-~~~~~IfI~pps~~~L~~RL~~R~~e-~~~-~i~ 144 (186)
+....+..|+-+++-+ + +||+.| + .+..+||+.. |.+++.+||.+|... .+. -++
T Consensus 76 ~~~~~l~~~q~vVlAC---S--aLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lle 149 (191)
T KOG3354 76 ELRKALASGQGVVLAC---S--ALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLE 149 (191)
T ss_pred HHHHHHHCCCEEEEEH---H--HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC-CHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9998763278189972---8--8889999999732114786678640588863304-29999999840666668878999
Q ss_pred HHH--HHH--HHCCCEE---EECCCHHHHHHHH
Q ss_conf 999--986--5359889---9939789999999
Q gi|254780132|r 145 PDL--FGK--NHSYSFT---IVNNHLPTACRQV 170 (186)
Q Consensus 145 ~r~--~~~--~~~fD~i---IiNddle~a~~~l 170 (186)
..+ +.. ..+-|.+ +.|.+.++.+..+
T Consensus 150 SQf~~LE~p~~~e~div~isv~~~~~e~iv~tI 182 (191)
T KOG3354 150 SQFATLEAPDADEEDIVTISVKTYSVEEIVDTI 182 (191)
T ss_pred HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 888752699998246688860347899999999
No 48
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=2.4e-06 Score=59.33 Aligned_cols=132 Identities=22% Similarity=0.336 Sum_probs=68.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEEEE----ECCCCCCC-CCCCCCCHHHCCHHHHH-----H---HHCCCEEEE
Q ss_conf 999987999998999999985189-8179986----02788898-83346420100145542-----2---102781876
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE-YLVMPVG----VTTRRPRV-DEKQYIDYRFISQSQFK-----G---WKHTGLFIE 69 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~----~TTR~~R~-~E~~g~dY~Fvs~~~F~-----~---~i~~~~FiE 69 (186)
||-|+|+|||||||++++|++.++ ....+++ |-.+..++ .|..+.+|. ..+.|. + .+++|+=++
T Consensus 10 iIgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d--~p~A~D~dLl~~~L~~L~~g~~v~ 87 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYD--HPEAFDLDLLIEHLKDLKQGKPVD 87 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCHHHCCCCCCC--CHHHHCHHHHHHHHHHHHCCCCCC
T ss_conf 999867987788999999999828675247652232025301667553785744--823436899999999997699224
Q ss_pred EEEECCCEEEEECCCHHHH-HHHCCCCCCCCCCCHHHHH-----HHCCCCCEEEEHCCCCCHHHHHHHHH----HCCCCC
Q ss_conf 6661287045442200233-4310242002542000244-----42054320000002321899998762----014544
Q gi|254780132|r 70 TTKVRDEYYGYLKEDINNP-MEHGYDILLILTHQGLAPL-----KKLYEDQVTSIFIAPPSEAELIQRRI----KRREDI 139 (186)
Q Consensus 70 ~~~~~g~~YGts~~~i~~~-~~~g~~~il~id~~G~~~l-----k~~~~~~~~~IfI~pps~~~L~~RL~----~R~~e~ 139 (186)
--.| . |-+....-... +...+++|+ +|...| ++.+. +.|||.+|...++.+|+. .||++.
T Consensus 88 ~P~y-d--~~~~~r~~~~i~~~p~~VIIv----EGi~~l~d~~lr~~~d---~kIfvdt~~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 88 LPVY-D--YKTHTREPETIKVEPNDVVIV----EGILLLYDERLRDLMD---LKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred CCCC-C--HHCCCCCCCCCCCCCCCEEEE----ECCCCCCCHHHHHHCC---EEEEEECCCCHHHHHHHHHHHHHHCCCH
T ss_conf 5642-0--313632577331389728999----4230015076776606---7899977832788998887798819998
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q gi|254780132|r 140 PFNLDPDL 147 (186)
Q Consensus 140 ~~~i~~r~ 147 (186)
+..+++-.
T Consensus 158 ~~vi~qy~ 165 (218)
T COG0572 158 ESVIEQYV 165 (218)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 49
>PRK13975 thymidylate kinase; Provisional
Probab=98.22 E-value=5.5e-06 Score=57.09 Aligned_cols=38 Identities=32% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 97199998799999899999998518981799860278889883
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE 44 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E 44 (186)
|+|+|++=|+-||||+|.++.|.+.... .+||+|..+.
T Consensus 1 m~kfI~fEGiDGsGKsTq~~lL~~~L~~------~~t~epg~t~ 38 (198)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLNA------KFTFEPTDGK 38 (198)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC------CEEECCCCCC
T ss_conf 9988999899888699999999997387------4888979984
No 50
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=7.8e-06 Score=56.20 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=88.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHH----HCCHHHHHHHHCCCE-------EEE
Q ss_conf 199998799999899999998518981799860278889883--3464201----001455422102781-------876
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYR----FISQSQFKGWKHTGL-------FIE 69 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~----Fvs~~~F~~~i~~~~-------FiE 69 (186)
.||.|=|+||+||+||+..|..+. ++..+++ |--.|+== +=+.+|. --|=+.++.+..... |..
T Consensus 90 ~IILIGGasGVGkStIA~ElA~rL-gI~~vis--TD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 90 LIILIGGASGVGKSTIAGELARRL-GIRSVIS--TDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC-CCCEEEC--CHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 599961788777257999999972-9861004--2479999997379774553567577999983689999613131787
Q ss_pred EEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH----HH-HCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCH----
Q ss_conf 6661287045442200233431024200254200024----44-20543200000023218999987620145448----
Q gi|254780132|r 70 TTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LK-KLYEDQVTSIFIAPPSEAELIQRRIKRREDIP---- 140 (186)
Q Consensus 70 ~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~----lk-~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~---- 140 (186)
+++. -.=|+. .-|+.++.+|-++++ +|+.- ++ +.++.+++..++..++.+..+.|+.+|..++.
T Consensus 167 qa~~--V~~GI~-~VI~RAi~eG~~lII----EGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp 239 (299)
T COG2074 167 QASA--VMVGIE-AVIERAIEEGEDLII----EGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTHASRP 239 (299)
T ss_pred HHHH--HHHHHH-HHHHHHHHCCCCEEE----EEEEECCCCCCHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 7679--998899-999999853753588----742115002167661355178999838878999999998888760596
Q ss_pred -----------HHHHHHHHHHHHCCCE-EEECCCHHHHHHHH-HHHHHHHHHC
Q ss_conf -----------9999999986535988-99939789999999-9999999730
Q gi|254780132|r 141 -----------FNLDPDLFGKNHSYSF-TIVNNHLPTACRQV-GLIREFVKRG 180 (186)
Q Consensus 141 -----------~~i~~r~~~~~~~fD~-iIiNddle~a~~~l-~~Iie~l~~~ 180 (186)
..|..-+...+.+|+. +|.|+|++++.+++ ..|.+++.+.
T Consensus 240 ~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i~~~~~r~ 292 (299)
T COG2074 240 GGRYLEYFKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDIRKRTVRG 292 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 56799999999999999999888659981125319999999999999998887
No 51
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.18 E-value=1.2e-05 Score=55.14 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE--ECCC----CCC-CCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEE
Q ss_conf 9719999879999989999999851898179986--0278----889-88334642010014554221027818766661
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG--VTTR----RPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~--~TTR----~~R-~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~ 73 (186)
|.+=|+|+|+.||||||+.+.|.+.. ++.|.=+ ...+ +.. -=+..|.+ .|.+.-. +.+.. .
T Consensus 1 M~~~I~LiG~mGsGKstiGk~LA~~L-~~~fiD~D~~Ie~~~g~sI~eif~~~Ge~-------~FR~~E~--~~l~~--l 68 (172)
T PRK03731 1 MTQPLFLVGPRGCGKTTVGMALAQAL-GYRFVDTDLWLQSTLQMTVAEIVEREGWA-------GFRARES--AALEA--V 68 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHCCCHHHHHHHHCHH-------HHHHHHH--HHHHH--H
T ss_conf 99988998899998899999999985-99979786999988398999999983989-------9999999--99998--4
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH------C----CCCCHHHH
Q ss_conf 2870454422002334310242002542000244420543200000023218999987620------1----45448999
Q gi|254780132|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK------R----REDIPFNL 143 (186)
Q Consensus 74 ~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~------R----~~e~~~~i 143 (186)
+.. ..++..|--+++ +++....|++ +..+||+.+ +.+.+.+|+.. | +.+..+.+
T Consensus 69 ------~~~---~~VIstGGG~v~--~~~n~~~L~~----~g~vv~L~~-~~~~l~~Rl~~~~~~~~RPll~~~~~~~~i 132 (172)
T PRK03731 69 ------TAP---STVVATGGGIIL--TEENRAFMRN----NGIVIYLCA-PVSVLANRLEADPEEDQRPTLTGKPLSEEV 132 (172)
T ss_pred ------CCC---CEEEEECCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf ------278---828980786426--8999999996----899999979-999999998138778989878899879999
Q ss_pred HH----HHHHHHHCCCEEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf 99----9998653598899939-789999999999999973
Q gi|254780132|r 144 DP----DLFGKNHSYSFTIVNN-HLPTACRQVGLIREFVKR 179 (186)
Q Consensus 144 ~~----r~~~~~~~fD~iIiNd-dle~a~~~l~~Iie~l~~ 179 (186)
.. |.--+...-|++|.++ +.++.+++ |++.|+.
T Consensus 133 ~~l~~~R~~~Y~~~a~~ii~~~~~~~~i~~~---Il~~L~e 170 (172)
T PRK03731 133 AEVLAERDALYREVAHHIIDATQPPSQVVSE---ILSALAQ 170 (172)
T ss_pred HHHHHHHHHHHHHHCCEEECCCCCHHHHHHH---HHHHHHH
T ss_conf 9999999999998489988798999999999---9998732
No 52
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.16 E-value=1.3e-05 Score=54.92 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=77.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 999987999998999999985189--817998602788898833464201001455422102781876666128704544
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE--YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~--~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
|+||+|.+||||||+++.|.+... +...++- .+--.| +.+.+..+..++++ -|..
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~-~~d~~~-------~~~~~~~~~~Ek~~---------------r~~~ 57 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIIL-GTDLIR-------ESFPVWKEKYEEFI---------------RDST 57 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE-CCCCCH-------HHHHHCCHHHHHHH---------------HHHH
T ss_conf 978967899989999999999999829965996-552002-------12000336779998---------------9999
Q ss_pred CCCHHHHHHHCCCCCCCCCCC---HHH----HHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH-H--
Q ss_conf 220023343102420025420---002----444205432000000232189999876201454489999999986-5--
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQ---GLA----PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK-N-- 151 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~---G~~----~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~-~-- 151 (186)
...|...+....++|+|= .+ |.+ .+-+.++.....||+.+| .+...+|=..|+...+.++-+++... +
T Consensus 58 ~~~v~~~l~~~~~vI~D~-~nYiKg~RYEL~clAk~~~t~~c~I~~~~p-~e~c~~~N~~R~~~~~~e~i~~m~~r~E~P 135 (249)
T TIGR03574 58 LYLIKTALKNKYSVIVDD-TNYYNSKRRDLINIAKEYNKNYIIIYLKAP-LDTLLRRNIERGEKIPNEVIKDMYEKFDEP 135 (249)
T ss_pred HHHHHHHHCCCCEEEECC-CCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999843376699727-327889999999999984998699997399-999999876068999999999999970799
Q ss_pred ------HCCCEEEECC---CHHHHHHHHHHHHHHHHH
Q ss_conf ------3598899939---789999999999999973
Q gi|254780132|r 152 ------HSYSFTIVNN---HLPTACRQVGLIREFVKR 179 (186)
Q Consensus 152 ------~~fD~iIiNd---dle~a~~~l~~Iie~l~~ 179 (186)
..-.++|..+ ++++.++. +++.+++
T Consensus 136 ~~~nrWdsplf~i~~~~~~~~~~i~~~---l~e~~~~ 169 (249)
T TIGR03574 136 GTKYSWDLPDITIDTTKKIDYNEILEE---ILEISEN 169 (249)
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHH---HHHHHHC
T ss_conf 989865578168428988899999999---9998514
No 53
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.16 E-value=2.4e-06 Score=59.26 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=66.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102781876666128704544
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
|.+|+++|.||||||||+++|......-... -.+++-+++.+......|=.-.. ..|. ..
T Consensus 7 g~viW~TGLsGSGKTTiA~~l~~~L~~~g~~-----------------~~~LDGD~lR~~~~~~gfs~~~R-~~n~--~r 66 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSN-----------------VIYLDGDELREIFGHSGYDKESR-IEMA--LK 66 (176)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-----------------EEEECCHHHHHHHCCCCCCHHHH-HHHH--HH
T ss_conf 6799978999998999999999999975997-----------------79988689998736589899999-9999--99
Q ss_pred CCCHHH-HHHHCCCCCCCC-CCC-HHHH-HHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH--------
Q ss_conf 220023-343102420025-420-0024-4420543200000023218999987620145448999999998--------
Q gi|254780132|r 82 KEDINN-PMEHGYDILLIL-THQ-GLAP-LKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFG-------- 149 (186)
Q Consensus 82 ~~~i~~-~~~~g~~~il~i-d~~-G~~~-lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~-------- 149 (186)
...+-. ..++|.+||... .|. ..++ .|+.. .+.+-|||.+| .+++.+|= ... +-++-..
T Consensus 67 ~~~lak~l~~~g~~vIvs~isp~~~~R~~~R~~~-~~~~EVyv~~p-le~~~~RD------~Kg-LY~ka~~g~i~n~~G 137 (176)
T PRK05541 67 RAKLAAFLADQGMIVIVTTISMFNEIYAYNRKHL-PNYFEVYLKCD-MEELIRRD------QKG-LYTKALKGEISNVVG 137 (176)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC-CCCEEEEEECC-HHHHHHCC------CHH-HHHHHHCCCCCCCCC
T ss_conf 9999999864698036752279899999999748-87689999489-99998738------541-789987598889610
Q ss_pred H-----HHCCCEEEECCC---HHHHHHHHHHHHHHHHH
Q ss_conf 6-----535988999397---89999999999999973
Q gi|254780132|r 150 K-----NHSYSFTIVNNH---LPTACRQVGLIREFVKR 179 (186)
Q Consensus 150 ~-----~~~fD~iIiNdd---le~a~~~l~~Iie~l~~ 179 (186)
. ...-|.+|+|++ +++++++ |++.++.
T Consensus 138 id~pye~P~~~~~i~~t~~~s~~e~~~~---Il~~lk~ 172 (176)
T PRK05541 138 VDIPFDEPKADLVIDNSCRTSLDEKVDL---ILNKLKL 172 (176)
T ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHH---HHHHHHH
T ss_conf 5689999899989879999899999999---9999997
No 54
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=98.14 E-value=3.5e-06 Score=58.33 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=55.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCC-
Q ss_conf 719999879999989999999851-8981799860278889883346420100145542210---27818766661287-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDE- 76 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~- 76 (186)
|.-+.||||||+|||||.+-|+-- +|.-..+ . .||+|=.=.++++|.+.+ .++--+-.+.+..|
T Consensus 366 GEtvAlVGPSGAGKSTlf~LLLRFYDP~~G~i-l----------LDGvd~r~~dP~~lR~~~ALVpQdp~lFa~Sv~eNI 434 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-L----------LDGVDIRDLDPADLRARIALVPQDPALFAASVLENI 434 (576)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEE-E----------ECCCCHHHCCCHHHHHHCCCCCCCCCCCHHCCHHHH
T ss_conf 76588766887627999999986048887657-7----------466414016808788344402588641020304421
Q ss_pred EEEEECCCHHHHH
Q ss_conf 0454422002334
Q gi|254780132|r 77 YYGYLKEDINNPM 89 (186)
Q Consensus 77 ~YGts~~~i~~~~ 89 (186)
-||-+-++=+++.
T Consensus 435 RyGrpDAs~~~V~ 447 (576)
T TIGR02204 435 RYGRPDASDEEVE 447 (576)
T ss_pred CCCCCCCCHHHHH
T ss_conf 3599666668999
No 55
>PRK00625 shikimate kinase; Provisional
Probab=98.09 E-value=1.1e-05 Score=55.41 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=66.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE--EC----CCCCC-----CCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEE
Q ss_conf 999879999989999999851898179986--02----78889-----88334642010014554221027818766661
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVG--VT----TRRPR-----VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~--~T----TR~~R-----~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~ 73 (186)
|+|+|+.||||||+-+.|.+.. ++.|+=+ .. ..+.. --+.+|.+ .|.++-. +.+
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l-~~~FvD~D~~Ie~~~~~~i~~Si~eIf~~~GE~-------~FR~~E~--~~l----- 67 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL-SLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEE-------GFCEEEA--LAL----- 67 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEECHHHHHHHHCCCCCCCHHHHHHHHCHH-------HHHHHHH--HHH-----
T ss_conf 9998999998899999999993-999577499999986865235699999971899-------9999999--999-----
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCC----CCH----HHHHH
Q ss_conf 2870454422002334310242002542000244420543200000023218999987620145----448----99999
Q gi|254780132|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRE----DIP----FNLDP 145 (186)
Q Consensus 74 ~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~----e~~----~~i~~ 145 (186)
... +.. ..+++.|--+++ +++....|++. ..+||+.+ +.+.+.+|+.+|.. +.. +-.++
T Consensus 68 ~~l----~~~--~~VIstGGG~v~--~~~n~~~Lk~~----g~vV~L~~-~~e~i~~Rl~~rpl~~~~~~~~~l~~l~~e 134 (173)
T PRK00625 68 ESL----PVI--PSIVALGGGTLM--HEESYDHIRNR----GLLVLLSL-PIATIYQRLQKRGLPERLKKTPSLEEILTQ 134 (173)
T ss_pred HHH----CCC--CCEEECCCCCCC--CHHHHHHHHHC----CEEEEEEC-CHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 973----248--968974885017--89999999968----99999839-999999998269987778835799999999
Q ss_pred HHHHHHHCCCEEEECCCH
Q ss_conf 999865359889993978
Q gi|254780132|r 146 DLFGKNHSYSFTIVNNHL 163 (186)
Q Consensus 146 r~~~~~~~fD~iIiNddl 163 (186)
|...+....|++|.+|++
T Consensus 135 R~~lY~~~AD~iI~~d~~ 152 (173)
T PRK00625 135 RIDRMREIADYIFSLDHV 152 (173)
T ss_pred HHHHHHHHCCEEEECCCC
T ss_conf 999999979999968997
No 56
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.08 E-value=5.2e-06 Score=57.25 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCE-EEEEEEECCCEEEE
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102781-87666612870454
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGL-FIETTKVRDEYYGY 80 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~-FiE~~~~~g~~YGt 80 (186)
|.+|.++|.||||||||++.|.......... -.+++-+.+...+..+. |=.... ..|.--
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~~~~~~-----------------~~~LDGD~lR~~l~~~lgfs~~dR-~~n~~r- 64 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLRARGYP-----------------VEVLDGDIVRTNLSKGLGFSKEDR-DTNIRR- 64 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-----------------EEEECCHHHHHHHCCCCCCCHHHH-HHHHHH-
T ss_conf 8899988989999999999999999986996-----------------799776888875367889898999-999999-
Q ss_pred ECCCH-HHHHHHCCCCCCCC-CC-CHHH-HHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH--------
Q ss_conf 42200-23343102420025-42-0002-4442054320000002321899998762014544899999999--------
Q gi|254780132|r 81 LKEDI-NNPMEHGYDILLIL-TH-QGLA-PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLF-------- 148 (186)
Q Consensus 81 s~~~i-~~~~~~g~~~il~i-d~-~G~~-~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~-------- 148 (186)
...+ ....++|.+||+-. .| ...+ ..|+.++ +.+-|||.+| .+++++|=. .. +-++-.
T Consensus 65 -~~~la~~l~~~g~~vIvs~isp~~~~R~~~r~~~~-~~~EIyv~~~-l~~~~~RD~------Kg-LY~ka~~g~i~n~~ 134 (175)
T PRK00889 65 -IGFVAHLLTRHGVIVLVSAISPYRETREEVRGTIG-NFVEVFVNAP-LEVCEQRDV------KG-LYAKARAGEIKHFT 134 (175)
T ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCC-CCEEEEECCC-HHHHHHCCH------HH-HHHHHHCCCCCCCC
T ss_conf -99999999818986888504799999999998578-7669984288-899988070------54-77897648778840
Q ss_pred ------HHHHCCCEEEECC--CHHHHHHHHHHHHHHHHH
Q ss_conf ------8653598899939--789999999999999973
Q gi|254780132|r 149 ------GKNHSYSFTIVNN--HLPTACRQVGLIREFVKR 179 (186)
Q Consensus 149 ------~~~~~fD~iIiNd--dle~a~~~l~~Iie~l~~ 179 (186)
......|.+|.++ ++++++++ |+++|++
T Consensus 135 Gid~~yE~P~~pdl~IdT~~~si~~~~~~---Ii~~L~~ 170 (175)
T PRK00889 135 GIDDPYEPPLNPEVECRTDLESLEESVAK---VLQKLEE 170 (175)
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHH---HHHHHHH
T ss_conf 05689999999806987999999999999---9999998
No 57
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.08 E-value=3.5e-06 Score=58.33 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=49.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHH---HCCCEEEEEEEECCCE-
Q ss_conf 719999879999989999999851898179986027888988334642010014554221---0278187666612870-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW---KHTGLFIETTKVRDEY- 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~---i~~~~FiE~~~~~g~~- 77 (186)
|+.+.|+||||||||||++-|+.-++--.-.|. +||+|..=++.+...+. ..++-|+-.+++..|.
T Consensus 367 Ge~vaiVG~SGsGKSTL~~LL~r~ydp~~G~I~----------idG~di~~~~~~~lr~~i~~V~Q~~~LF~~TI~eNi~ 436 (575)
T PRK11160 367 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL----------LNGQPIASYSEAALRQAISVVSQRVHLFSGTLRDNLL 436 (575)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 988999889997599999998623678998899----------9989756388899987613567776025886789987
Q ss_pred EEEECCCHHH
Q ss_conf 4544220023
Q gi|254780132|r 78 YGYLKEDINN 87 (186)
Q Consensus 78 YGts~~~i~~ 87 (186)
||-+..+-++
T Consensus 437 ~g~~~atdee 446 (575)
T PRK11160 437 LAAPNATDEA 446 (575)
T ss_pred HCCCCCCHHH
T ss_conf 2589878999
No 58
>PRK06762 hypothetical protein; Provisional
Probab=98.06 E-value=1.3e-05 Score=54.78 Aligned_cols=28 Identities=43% Similarity=0.551 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9719999879999989999999851898
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEY 28 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~ 28 (186)
|.++|||=|.|||||+|++++|-+.++.
T Consensus 1 mt~LIiiRGNSgSGKtT~Ak~L~~~~G~ 28 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9528999788888878999999998688
No 59
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.05 E-value=1.2e-05 Score=55.14 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 999987999998999999985189817
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLV 30 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~ 30 (186)
||-|+|+||||||||++.|.+..|...
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~~~~ 27 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCC 27 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 989968888759999999999879988
No 60
>PRK07667 uridine kinase; Provisional
Probab=98.02 E-value=5.8e-05 Score=50.91 Aligned_cols=134 Identities=14% Similarity=0.197 Sum_probs=63.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE-----ECCCCCCCC--CCCCCCHHHCC-------HHHHHHHHCCCEE
Q ss_conf 9999879999989999999851898--179986-----027888988--33464201001-------4554221027818
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY--LVMPVG-----VTTRRPRVD--EKQYIDYRFIS-------QSQFKGWKHTGLF 67 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~--~~~~v~-----~TTR~~R~~--E~~g~dY~Fvs-------~~~F~~~i~~~~F 67 (186)
||-|.|+|||||||++++|.+..+. ....+- |..+..|.+ --+...|++.+ ++-|+. .+.|.=
T Consensus 16 iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~~~~r~~~~~~~~~~~~~~~~D~~~L~~~ll~~-Lk~g~~ 94 (190)
T PRK07667 16 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRK-LQNETK 94 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHH-HCCCCC
T ss_conf 9997798978899999999999866598379996662426588873059854001254312599999999998-438997
Q ss_pred EEEEEECCCEEEEE-CCCHHHHHHHCCCCCCCCCCCHHHH----HHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 76666128704544-2200233431024200254200024----442054320000002321899998762014544899
Q gi|254780132|r 68 IETTKVRDEYYGYL-KEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFN 142 (186)
Q Consensus 68 iE~~~~~g~~YGts-~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~ 142 (186)
+++-.|. |-|. ...-.-.+....++|+ +|.-- |+..+. +.||+..|....+. |...|....-..
T Consensus 95 i~~p~Yd---~~t~~~~~~~~~v~p~~VIIv----EGI~l~~~elrd~~D---~kIfVD~~~d~r~~-R~~~~~~~~l~~ 163 (190)
T PRK07667 95 LTLPFYH---DETDTCEMKKVQIPIVGVIVI----EGVFLQRKEWRDFFH---YMVYLDCPRETRFL-RESEETQKNLSK 163 (190)
T ss_pred EEEEEEC---CCCCCCCCCEEECCCCCEEEE----ECHHHCCHHHHHHCC---EEEEEECCHHHHHH-HHHHHHHHHHHH
T ss_conf 6752460---233667764276699988999----504438887897568---79999789999988-730202346899
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780132|r 143 LDPDLFG 149 (186)
Q Consensus 143 i~~r~~~ 149 (186)
...|...
T Consensus 164 ~~~ry~~ 170 (190)
T PRK07667 164 FENRYWK 170 (190)
T ss_pred HHHHHHH
T ss_conf 9999999
No 61
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.02 E-value=7.2e-06 Score=56.39 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=50.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCCE-
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210---278187666612870-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDEY- 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~~- 77 (186)
|+.+.|+||||||||||++.|+.-+|.- ..|. +||+|..-++.+.+.+.+ .++-++-.+++..|.
T Consensus 376 Ge~vaIVG~SGsGKSTl~~LL~g~~p~~-G~I~----------i~g~di~~i~~~~lr~~i~~V~Q~~~LF~~TI~eNI~ 444 (588)
T PRK11174 376 GQRVALVGPSGAGKTSLLNALLGFLPYQ-GSLK----------INGIELRELDPESWRKHLSWVGQNPQLFHGTLRDNVL 444 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC-CEEE----------ECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHH
T ss_conf 9789998999864999999998728988-3899----------9998603089999996603516667777662998653
Q ss_pred EEEECCCHHHHH
Q ss_conf 454422002334
Q gi|254780132|r 78 YGYLKEDINNPM 89 (186)
Q Consensus 78 YGts~~~i~~~~ 89 (186)
||-+..+-++++
T Consensus 445 ~g~~~atdeei~ 456 (588)
T PRK11174 445 LANPDASDEQLQ 456 (588)
T ss_pred CCCCCCCHHHHH
T ss_conf 358543345799
No 62
>PRK13946 shikimate kinase; Provisional
Probab=98.01 E-value=5.2e-05 Score=51.23 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=66.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE--ECC----CCCCC-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEEEC
Q ss_conf 719999879999989999999851898179986--027----88898-83346420100145542210278187666612
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG--VTT----RRPRV-DEKQYIDYRFISQSQFKGWKHTGLFIETTKVR 74 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~--~TT----R~~R~-~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~ 74 (186)
++=|+|+|+.||||||+.+.|.+.. ++.|.=+ ... .+... -+..|. +.|.++-.
T Consensus 20 kknIvLIG~mGsGKStvGk~LA~~L-~~~fiD~D~~IE~~~g~sI~eIF~~~GE-------~~FR~~E~----------- 80 (195)
T PRK13946 20 KRTVVLVGLMGAGKSTVGRRLATML-GLPFLDADTEIERAARMTIPEIFATYGE-------PEFRDLER----------- 80 (195)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEEECHHHHHHHHCCCHHHHHHHHCH-------HHHHHHHH-----------
T ss_conf 9958998999998899999999997-9798988599999809989999998697-------99999899-----------
Q ss_pred CCEEEEECCCHHHH-------HHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC-------CCCH
Q ss_conf 87045442200233-------431024200254200024442054320000002321899998762014-------5448
Q gi|254780132|r 75 DEYYGYLKEDINNP-------MEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDIP 140 (186)
Q Consensus 75 g~~YGts~~~i~~~-------~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~e~~ 140 (186)
..+.+. +..|--+++ +.+....|++ +.++||+.+ +.+.+.+|+.... .+..
T Consensus 81 --------~~l~~l~~~~~~VIstGGG~v~--~~~n~~~L~~----~g~vI~L~~-~~e~l~~Rl~~~~~RPLl~~~~~~ 145 (195)
T PRK13946 81 --------RVIARLLKGGPLVLATGGGAFM--NEETRAAIRE----KGISVWLKA-DLDVLWERVSRRDTRPLLRTADPK 145 (195)
T ss_pred --------HHHHHHHCCCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf --------9999986489879975874236--8999999995----796899849-999999997289999989998879
Q ss_pred HHH----HHHHHHHHHCCCEEEECC--CHHHHHHHHHHHH
Q ss_conf 999----999998653598899939--7899999999999
Q gi|254780132|r 141 FNL----DPDLFGKNHSYSFTIVNN--HLPTACRQVGLIR 174 (186)
Q Consensus 141 ~~i----~~r~~~~~~~fD~iIiNd--dle~a~~~l~~Ii 174 (186)
+.+ +.|.--+.. .|++|..+ ..++.+++|...+
T Consensus 146 ~~l~~l~~~R~~lY~~-Ad~~I~t~~~s~~~ia~eIi~~L 184 (195)
T PRK13946 146 ETLARLMEERYPVYAQ-ADLTVESRDVPHEVIADEVIEAL 184 (195)
T ss_pred HHHHHHHHHHHHHHHH-CCEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999999999999997-89898899899999999999999
No 63
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.01 E-value=3.9e-05 Score=51.95 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=67.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCCCCCCCCCCCC--HHHC--CHHHHHHHHCCCEEEEEEEECC
Q ss_conf 719999879999989999999851898179986--027888988334642--0100--1455422102781876666128
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG--VTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRD 75 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~--~TTR~~R~~E~~g~d--Y~Fv--s~~~F~~~i~~~~FiE~~~~~g 75 (186)
+|=|+|+|+.||||||+.+.|.+.. ++.++=. +.-+ + .|.. =.|- -++.|.++-.+ .+. +...
T Consensus 4 kknI~LiG~mGsGKstvgk~LA~~l-~~~fiD~D~~Ie~--~----~g~si~~If~~~Ge~~FR~~E~~--~l~--~l~~ 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIEK--R----TGADIGWVFDVEGEEGFRDREEK--VIN--ELTE 72 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEEECHHHHHH--H----HCCCHHHHHHHHHHHHHHHHHHH--HHH--HHHC
T ss_conf 8828988999998899999999996-9996878099999--9----79899999999749999999999--999--8854
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH---CC----CCCHHHHH----
Q ss_conf 70454422002334310242002542000244420543200000023218999987620---14----54489999----
Q gi|254780132|r 76 EYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK---RR----EDIPFNLD---- 144 (186)
Q Consensus 76 ~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~---R~----~e~~~~i~---- 144 (186)
.. .-++..|--+++. .+....|+ .+..+||+.+ +.+.+.+|+.. |. .+..+.++
T Consensus 73 ------~~--~~VIstGGG~v~~--~~~~~~L~----~~g~vv~L~~-~~~~~~~R~~~~~~RPll~~~~~~~~~~~l~~ 137 (172)
T PRK05057 73 ------KQ--GIVLATGGGSVKS--RETRNRLS----ARGVVVYLET-TIEKQLARTQRDKKRPLLQVDDPREVLEALAN 137 (172)
T ss_pred ------CC--CEEEECCCCCCCC--HHHHHHHH----HCCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf ------79--9799789853588--99999999----6695899959-98999998058999997989987999999999
Q ss_pred HHHHHHHHCCCEEEECC--CHHHHHHHHHHHHHHHHHC
Q ss_conf 99998653598899939--7899999999999999730
Q gi|254780132|r 145 PDLFGKNHSYSFTIVNN--HLPTACRQVGLIREFVKRG 180 (186)
Q Consensus 145 ~r~~~~~~~fD~iIiNd--dle~a~~~l~~Iie~l~~~ 180 (186)
.|.--+....|++|..+ ++++.+++ |++.|+++
T Consensus 138 ~R~~~Y~~~Ad~~I~td~~~~~~i~~~---Ii~~L~~n 172 (172)
T PRK05057 138 ERNPLYEEIADVTVRTDDQSAKVVANQ---IIHMLESN 172 (172)
T ss_pred HHHHHHHHHCCEEEECCCCCHHHHHHH---HHHHHHCC
T ss_conf 999999986999998999999999999---99999609
No 64
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.01 E-value=1.1e-05 Score=55.33 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCC-EEEEEEEE-CCCEEE
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210278-18766661-287045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG-LFIETTKV-RDEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~-~FiE~~~~-~g~~YG 79 (186)
|.+|.|+|.||||||||++.|.......... -.+++-+.|......+ .|-..... +-..+
T Consensus 24 g~viWlTGLSGSGKTTlA~~L~~~L~~~~~~-----------------~~~LDGD~lR~~l~~dlgfs~~dR~~n~~r~- 85 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVH-----------------TYLLDGDNVRHGLCSDLGFSDADRKENIRRV- 85 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-----------------EEEECHHHHHHHHCCCCCCCHHHHHHHHHHH-
T ss_conf 8699987999998899999999999975997-----------------5997779998743667898999999999999-
Q ss_pred EECCCHHH-HHHHCCCCCCC-CCCCH-H-HHHHHCCCC-CEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH-----
Q ss_conf 44220023-34310242002-54200-0-244420543-200000023218999987620145448999999998-----
Q gi|254780132|r 80 YLKEDINN-PMEHGYDILLI-LTHQG-L-APLKKLYED-QVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFG----- 149 (186)
Q Consensus 80 ts~~~i~~-~~~~g~~~il~-id~~G-~-~~lk~~~~~-~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~----- 149 (186)
..+-+ ..++|.+||.- +.|-- . ...|+.++. +.+-|||.+| .+++++|=.+ . +-++-..
T Consensus 86 ---~~lak~l~~~G~iVIvs~Isp~~~~R~~~R~~~~~~~f~EIyl~~~-le~c~~RD~K------g-LY~ka~~gei~n 154 (198)
T PRK03846 86 ---GEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARDPK------G-LYKKARAGEIKN 154 (198)
T ss_pred ---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHCCCH------H-HHHHHHCCCCCC
T ss_conf ---9999999858983664147887999999998678775799994388-9999873816------5-788986588888
Q ss_pred ---------HHHCCCEEEECC--CHHHHHHHHHHHHHHHHHC
Q ss_conf ---------653598899939--7899999999999999730
Q gi|254780132|r 150 ---------KNHSYSFTIVNN--HLPTACRQVGLIREFVKRG 180 (186)
Q Consensus 150 ---------~~~~fD~iIiNd--dle~a~~~l~~Iie~l~~~ 180 (186)
....-|.+|.++ ++++++.+ |++++++.
T Consensus 155 ~~Gvd~pyE~P~~pdl~Idt~~~si~~~~~~---I~~~l~~~ 193 (198)
T PRK03846 155 FTGIDSPYEAPESPEIHLDTGEQLVTNLVEQ---LLDYLRQR 193 (198)
T ss_pred CEECCCCCCCCCCCCEEEECCCCCHHHHHHH---HHHHHHHC
T ss_conf 4007889999999806986999999999999---99999986
No 65
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.99 E-value=0.00026 Score=46.93 Aligned_cols=27 Identities=30% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 9719-99987999998999999985189
Q gi|254780132|r 1 MAHI-FVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 1 m~ki-ivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++ |.|-|||||||+|+++.|.++..
T Consensus 2 ~~~iIIaIDGpagSGKST~ak~lA~~L~ 29 (225)
T PRK00023 2 MKAPVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9897899658986787899999999939
No 66
>PRK04040 adenylate kinase; Provisional
Probab=97.96 E-value=0.00016 Score=48.32 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCC-CCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 971999987999998999999985189-81799860278889-8833464201001455422102781876666128704
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYY 78 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R-~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~Y 78 (186)
|.++++++|-+|+||||+++.+.+... ++.. +.|-|.=-. ..+..++ -+++++.++--.... +
T Consensus 1 ~~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~-vn~G~~M~e~A~~~glv----~~RDemRkL~~~~q~----~------ 65 (189)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKI-VNFGDVMLEVAKEEGLV----EHRDEMRKLPLEEQK----E------ 65 (189)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEHHHHHHHHHHHCCCC----CCHHHHCCCCHHHHH----H------
T ss_conf 94189997589887899999999972358759-86779999999981773----477887479999999----9------
Q ss_pred EEECCCHHHHHHHCC--CCCCCCC-----CCHH------HHHHHCCCCCEEEEHCCCCCHHHHHHHHHH--CC--CCCHH
Q ss_conf 544220023343102--4200254-----2000------244420543200000023218999987620--14--54489
Q gi|254780132|r 79 GYLKEDINNPMEHGY--DILLILT-----HQGL------APLKKLYEDQVTSIFIAPPSEAELIQRRIK--RR--EDIPF 141 (186)
Q Consensus 79 Gts~~~i~~~~~~g~--~~il~id-----~~G~------~~lk~~~~~~~~~IfI~pps~~~L~~RL~~--R~--~e~~~ 141 (186)
..+.+-+.+.+.+. .+++|.+ +.|+ .-|+...|+. .|.|.+...+.+.+|+.. |. .++.+
T Consensus 66 -lQ~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~--ivlieA~P~eIl~RR~~D~tR~RD~es~~ 142 (189)
T PRK04040 66 -LQREAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDV--IVLIEADPDEILMRRLRDPTRRRDVETEE 142 (189)
T ss_pred -HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCE--EEEEECCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf -999999999983578728994452002688677899899998669988--99997588999998842556689878899
Q ss_pred HHHHHHH-------HHHHC---CCEEEECCC--HHHHHHHHHHHH
Q ss_conf 9999999-------86535---988999397--899999999999
Q gi|254780132|r 142 NLDPDLF-------GKNHS---YSFTIVNNH--LPTACRQVGLIR 174 (186)
Q Consensus 142 ~i~~r~~-------~~~~~---fD~iIiNdd--le~a~~~l~~Ii 174 (186)
.|++... +++.. -=++|.|.+ ++.|..+|..++
T Consensus 143 ~I~~hq~~nR~~a~ayavltga~Vkiv~N~e~~~e~Aa~~iv~~l 187 (189)
T PRK04040 143 SIEEHQEMNRAAAMAYAVLTGATVKIVENHEGLLEEAAEEIVEVL 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999999999999999999739848999789998899999999986
No 67
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.94 E-value=3.5e-06 Score=58.26 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC---CCEEEEEEEECCC-E
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102---7818766661287-0
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIETTKVRDE-Y 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~---~~~FiE~~~~~g~-~ 77 (186)
|..+.|+|||||||+||++.|+.-++.-...|. +||+|..-++.+...+.+. +.-++-.+++..| .
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~----------idg~dI~~i~~~~lr~~i~~V~Qd~~LF~~TI~~NI~ 424 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL----------IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA 424 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE----------ECCEEHHHCCHHHHHHHEEEECCCCHHHHHHHHHHHH
T ss_conf 987888558888578999999861588883698----------9999777538567887823546642777766999974
Q ss_pred EEEEC---CCHHHHHHHC--CCCCCCCCCCHH
Q ss_conf 45442---2002334310--242002542000
Q gi|254780132|r 78 YGYLK---EDINNPMEHG--YDILLILTHQGL 104 (186)
Q Consensus 78 YGts~---~~i~~~~~~g--~~~il~id~~G~ 104 (186)
||-+. ++|.++++.- +..+..+ |+|.
T Consensus 425 ~g~~~at~eei~~a~k~a~~~d~I~~l-p~g~ 455 (567)
T COG1132 425 LGRPDATDEEIEEALKLANAHEFIANL-PDGY 455 (567)
T ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHC-CCCC
T ss_conf 578899999999999994863789847-6667
No 68
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.94 E-value=7.7e-06 Score=56.24 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=47.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCCE
Q ss_conf 71999987999998999999985189-81799860278889883346420100145542210---278187666612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~~ 77 (186)
|+.+.|+||||||||||++-|+.-++ .-. .|. .||+|-.=++.+.+.+.+ .+.-|+-.+++..|.
T Consensus 361 Ge~vaiVG~SGsGKSTL~~LL~gly~p~~G-~I~----------idg~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNI 429 (585)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLHRVFDPQSG-RIR----------IDGTDIRTVTRASLRRNIGVVFQEAGLFNRSIEDNL 429 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCC-CEE----------ECCEECHHCCHHHHHHHCCEECCCCCCCCHHHHHHH
T ss_conf 988999889898699999998601578879-675----------898961016899998525221667635476599887
Q ss_pred -EEEEC
Q ss_conf -45442
Q gi|254780132|r 78 -YGYLK 82 (186)
Q Consensus 78 -YGts~ 82 (186)
||-+-
T Consensus 430 ~~g~~~ 435 (585)
T PRK13657 430 RVGRPD 435 (585)
T ss_pred HCCCCC
T ss_conf 527999
No 69
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=97.94 E-value=9.8e-06 Score=55.59 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=36.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHH
Q ss_conf 71999987999998999999985189-8179986027888988334642010014554221
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~ 61 (186)
|.|+.|+|+||||||||++.|..+.+ +....-+..+ +||.- ++.++|+++
T Consensus 58 GeLlA~mGsSGAGKTTLmn~La~R~~~g~~~~g~~v~-------lNG~~---~~~~~~~~~ 108 (671)
T TIGR00955 58 GELLAIMGSSGAGKTTLMNALAFRSPKGLKVSGSVVL-------LNGRP---IDAKEMRAI 108 (671)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCEEE-------ECCEE---CCHHHHHHH
T ss_conf 7068984787662689999985337478614683678-------75837---586899854
No 70
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=97.94 E-value=3.7e-06 Score=58.16 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+|+-|++||||+||+||++.|...
T Consensus 171 ~k~tv~~G~SGVGKSSLIN~L~p~ 194 (351)
T PRK12289 171 NKITVVAGPSGVGKSSLINRLIPD 194 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 986999817988788988763741
No 71
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=97.93 E-value=9.4e-06 Score=55.69 Aligned_cols=85 Identities=20% Similarity=0.396 Sum_probs=47.6
Q ss_pred CC-EEEEECCCCCCHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCHHHCC--HHH-HHHHHCCC----EEE--E
Q ss_conf 71-9999879999989999999851--89817998602788898833464201001--455-42210278----187--6
Q gi|254780132|r 2 AH-IFVLIGASGVGKTTIAKQVVLN--SEYLVMPVGVTTRRPRVDEKQYIDYRFIS--QSQ-FKGWKHTG----LFI--E 69 (186)
Q Consensus 2 ~k-iivi~GpsGsGK~tl~~~L~~~--~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs--~~~-F~~~i~~~----~Fi--E 69 (186)
|+ |+||+||+|||||+|++....= ...|.+++-=-| -..|+-|.==-+|- +=. -+.|.+.+ -|| |
T Consensus 449 GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~---DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~LlDE 525 (941)
T TIGR00763 449 GPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVR---DEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLILLDE 525 (941)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCE---EHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 876787207269542227899999968804999526722---03112786432034672578999876041588068620
Q ss_pred EEEEC--CCEEEEECCCHHHHH
Q ss_conf 66612--870454422002334
Q gi|254780132|r 70 TTKVR--DEYYGYLKEDINNPM 89 (186)
Q Consensus 70 ~~~~~--g~~YGts~~~i~~~~ 89 (186)
--+.. .-++|=|-+++-+++
T Consensus 526 IDK~~~~~~~~GDPaSALLEvL 547 (941)
T TIGR00763 526 IDKIGLKSSFRGDPASALLEVL 547 (941)
T ss_pred EEEECCCCCCCCCHHHHHHHHC
T ss_conf 2200167886556378886412
No 72
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=8.3e-05 Score=49.98 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=62.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECC---CCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 1999987999998999999985189-8179986027---88898833464201001455422102781876666128704
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTT---RRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYY 78 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TT---R~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~Y 78 (186)
.+|+++|++||||+|.++.|.+... ....+++-+. |-.+-+|-.++- +=+-++.|.+.. |
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~-ke~yres~~ks~---------------~ 65 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPIL-KEVYRESFLKSV---------------E 65 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHH-HHHHHHHHHHHH---------------H
T ss_conf 569982699988017899999999972001121320145412331324037-999999998889---------------9
Q ss_pred EEECCCHHHHHHHCCCCCCCCCCCHHHHHH-------HCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 544220023343102420025420002444-------205432000000232189999876201454489999999986
Q gi|254780132|r 79 GYLKEDINNPMEHGYDILLILTHQGLAPLK-------KLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK 150 (186)
Q Consensus 79 Gts~~~i~~~~~~g~~~il~id~~G~~~lk-------~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~ 150 (186)
..+..+++ +..+|.| |.+=...++ +.+...-.+||+..| .+.+.+|-..||+-.+.++-++++..
T Consensus 66 ----rlldSalk-n~~VIvD-dtNYyksmRrqL~ceak~~~tt~ciIyl~~p-lDtc~rrN~ergepip~Evl~qly~R 137 (261)
T COG4088 66 ----RLLDSALK-NYLVIVD-DTNYYKSMRRQLACEAKERKTTWCIIYLRTP-LDTCLRRNRERGEPIPEEVLRQLYDR 137 (261)
T ss_pred ----HHHHHHHC-CEEEEEE-CCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf ----99999863-6499970-6328889999999999863786599997268-89998860247999989999999996
No 73
>PRK07429 phosphoribulokinase; Provisional
Probab=97.92 E-value=5.1e-05 Score=51.24 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=63.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEEEE----EC-CCCCCCCCCCCCCHHHCCHHHH--------HHHHCCCEEEE
Q ss_conf 9999879999989999999851898-179986----02-7888988334642010014554--------22102781876
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY-LVMPVG----VT-TRRPRVDEKQYIDYRFISQSQF--------KGWKHTGLFIE 69 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~----~T-TR~~R~~E~~g~dY~Fvs~~~F--------~~~i~~~~FiE 69 (186)
||-|+|-|||||||++++|.+.+.. ...+++ |- .|..|.- .|.+ +...+.| -+..++|+=++
T Consensus 10 IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~r~~--~~~t--~lhP~And~dLl~e~L~~Lk~Gk~I~ 85 (331)
T PRK07429 10 IIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQRKE--IGIT--ALDPRANNFDLMYEQLKALKTGQPIL 85 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH--CCCC--CCCCCHHCHHHHHHHHHHHHCCCCCC
T ss_conf 9998578877899999999998388877999478677788788987--1898--78964005999999999998599725
Q ss_pred EEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHH-----HHHHCCCCCEEEEHCCCCCHHHHHHHHH----HCCCCCH
Q ss_conf 666128704544220023343102420025420002-----4442054320000002321899998762----0145448
Q gi|254780132|r 70 TTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA-----PLKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDIP 140 (186)
Q Consensus 70 ~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~-----~lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~e~~ 140 (186)
--.| ++.=|+. +.-. .+.-..++|+ +|.. .|++.+. +.||+.|+...++.+|+. +||...+
T Consensus 86 ~PvY-dh~tg~~-~~~~-~I~P~~vIIv----EGLh~L~~~~lR~l~D---lKIFVD~d~diR~~rRI~RDv~ERG~s~E 155 (331)
T PRK07429 86 KPIY-NHETGKI-DPPE-YIKPNKIVVV----EGLHPLYDERVRDLYD---FKVYLDPPDEVKIAWKIKRDMAERGHTYE 155 (331)
T ss_pred CCCC-CCCCCCC-CCCE-EECCCCEEEE----ECCHHCCCHHHHHHCC---EEEEECCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 6523-5647877-8866-6068867999----1612128798997549---37996487889999988877866189999
Q ss_pred H
Q ss_conf 9
Q gi|254780132|r 141 F 141 (186)
Q Consensus 141 ~ 141 (186)
.
T Consensus 156 ~ 156 (331)
T PRK07429 156 D 156 (331)
T ss_pred H
T ss_conf 9
No 74
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.91 E-value=5.4e-06 Score=57.18 Aligned_cols=134 Identities=20% Similarity=0.217 Sum_probs=62.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECCC
Q ss_conf 99987999998999999985189817998602788898833464201001455422102781876666128704544220
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKED 84 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~~ 84 (186)
|+|.||+||||+|+++.|++++.-.++++.--=|.. -..+.. . -.+....+.+|..+--..+.. .....
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~is~gdlLR~~---~~~~t~---~-g~~i~~~~~~G~lvp~~i~~~----l~~~~ 70 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREE---IASGTE---L-GKKAKEYIDSGKLVPDEIVIK----LLKER 70 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHH---HHCCCH---H-HHHHHHHHHCCCCCCHHHHHH----HHHHH
T ss_conf 899899999879999999999798467688999999---974995---8-999999998799778999999----99999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHH---HHHC---CCCCEEEEHCCCCCHHHHHHHHHHCC----------------------
Q ss_conf 0233431024200254200024---4420---54320000002321899998762014----------------------
Q gi|254780132|r 85 INNPMEHGYDILLILTHQGLAP---LKKL---YEDQVTSIFIAPPSEAELIQRRIKRR---------------------- 136 (186)
Q Consensus 85 i~~~~~~g~~~il~id~~G~~~---lk~~---~~~~~~~IfI~pps~~~L~~RL~~R~---------------------- 136 (186)
+...- ..+-+|+|==|.-..| +-.. ...--.+|++.. +.+++.+||..|+
T Consensus 71 l~~~~-~~~g~ilDGfPR~~~Qa~~l~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~ 148 (194)
T cd01428 71 LKKPD-CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDV-PDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLS 148 (194)
T ss_pred HHCCC-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84765-43877874797989999999999973998788999966-89999999964676776666245566776566667
Q ss_pred ---CCCHHHHHHHHHHHH
Q ss_conf ---544899999999865
Q gi|254780132|r 137 ---EDIPFNLDPDLFGKN 151 (186)
Q Consensus 137 ---~e~~~~i~~r~~~~~ 151 (186)
+|.++.+.+|+..+.
T Consensus 149 ~R~DD~~e~i~~Rl~~y~ 166 (194)
T cd01428 149 QRSDDNEETIKKRLEVYK 166 (194)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 888986999999999999
No 75
>PRK07261 topology modulation protein; Provisional
Probab=97.89 E-value=9.3e-06 Score=55.71 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=45.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECC
Q ss_conf 99987999998999999985189817998602788-89883346420100145542210278187666612870454422
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRR-PRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~-~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~ 83 (186)
|.|+|+||||||||+++|.+.. ++... |--.- =.+|- +. .++++|.+++++=---+.|-+.|||..|..+
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~-~ip~~--~LD~l~w~p~w---~~---~~~~e~~~~~~~~~~~~~WIiDGny~~~~~~ 73 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHY-NCPVL--HLDQLHFSSNW---QE---RDDDDMIADISNFLLKQDWIIEGNYSNCLYE 73 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEE--EECCEEECCCC---EE---CCHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf 9998899986899999999987-97979--70227888999---88---8899999999999848987994785124777
Q ss_pred CHHHHHHHCCCCCCCC
Q ss_conf 0023343102420025
Q gi|254780132|r 84 DINNPMEHGYDILLIL 99 (186)
Q Consensus 84 ~i~~~~~~g~~~il~i 99 (186)
...-.+..++.||+
T Consensus 74 --~rl~~aD~iI~Ld~ 87 (171)
T PRK07261 74 --ERMAEADQIIFLNF 87 (171)
T ss_pred --HHHHHCCEEEEECC
T ss_conf --67977999999858
No 76
>PRK06547 hypothetical protein; Provisional
Probab=97.86 E-value=0.00028 Score=46.81 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=63.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHH-CCHHHHHHHHCCCEEEEEEEEC--CCEEE
Q ss_conf 19999879999989999999851898179986027888988334642010-0145542210278187666612--87045
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRF-ISQSQFKGWKHTGLFIETTKVR--DEYYG 79 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~F-vs~~~F~~~i~~~~FiE~~~~~--g~~YG 79 (186)
+||.|=||||||||||+++|.+..+....+ |+---- +|= +|-+... .-.++.-.-...|.=..|..|. .+.+|
T Consensus 16 ~iVaIDG~sGaGKTTLA~~La~~~~~~~vv--HmDD~Y-~GW-~gl~~~~~~l~~~VL~Pl~~G~~~~yr~~DW~~~~~~ 91 (184)
T PRK06547 16 ITVLIDGRSGSGKTTLAGELAACWEGSQLV--HLDDLY-PGW-DGLAAASEHVREALLDPRALGRPGRWRRWDWANNCPG 91 (184)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCEE--EECCCC-CCC-CCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 999986899888899999999745798289--705777-776-5404689999999864641899736606215789978
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCC-CCEEEEHCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 442200233431024200254200024442054-3200000023218999987620145448999
Q gi|254780132|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYE-DQVTSIFIAPPSEAELIQRRIKRREDIPFNL 143 (186)
Q Consensus 80 ts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~-~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i 143 (186)
-. ..+..+..+| | +|+-++..... .-...|||..|. ++-.+|...|..+.....
T Consensus 92 ~~-----~~v~~~~~lI--v--EGvga~~~~~r~~~d~~IWve~~~-~~r~~R~l~RDGe~~~~w 146 (184)
T PRK06547 92 GW-----VTVEPGRRLI--I--EGVGALTAANRALADLTVWLEGPE-ALRKQRALTRDPDYAPHW 146 (184)
T ss_pred CC-----EECCCCCCEE--E--ECCCCCCHHHCCCCCEEEEEECCH-HHHHHHHHHCCCCHHHHH
T ss_conf 75-----6737888189--9--662315631314123777774898-999999986095026999
No 77
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.85 E-value=5.1e-05 Score=51.23 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=71.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE--
Q ss_conf 199998799999899999998518981799860278889883346420100145542210278187666612870454--
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY-- 80 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt-- 80 (186)
+=|+|+|..|+|||||-+.|.+.. ++.|+= |.+..- +..|.. |+ +-|. ++++ -|--
T Consensus 134 ~rIaLIGlmGaGKSTvGr~LA~~L-g~pFvD--lD~~IE--k~aG~s---I~-eIFa---------~~GE----~~FR~~ 191 (304)
T PRK08154 134 PRIALIGLRGAGKSTLGRMLAARL-GVPFVE--LNREIE--REAGLS---VS-EIFA---------LYGQ----EGYRRL 191 (304)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH-CCCEEE--CHHHHH--HHHCCC---HH-HHHH---------HHCH----HHHHHH
T ss_conf 847988999998889999999995-989778--779999--992999---99-9999---------8688----999999
Q ss_pred ECCCHHHHHHHCCCCCCC------CCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCC--------CCHHHHHHH
Q ss_conf 422002334310242002------542000244420543200000023218999987620145--------448999999
Q gi|254780132|r 81 LKEDINNPMEHGYDILLI------LTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRE--------DIPFNLDPD 146 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~------id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~--------e~~~~i~~r 146 (186)
-...+.+.+.....+|+- ++++-...|++ +.++||+.+ +.+++.+|+...++ +..+.+..-
T Consensus 192 E~~~L~~ll~~~~~~VIAtGGGiV~~~~n~~~L~~----~g~vVwL~a-spe~l~~Rv~~~gd~RPLl~~~~a~e~L~~l 266 (304)
T PRK08154 192 ERRALERLIAEHEEMVLATGGGIVSEPATFDLLLS----HCYTVWLKA-SPEEHMARVRAQGDLRPMADNREAMEDLRRI 266 (304)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999998711699899728721278899999996----898999979-9999999986489999999998889999999
Q ss_pred HHHHH---HCCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 99865---359889993--978999999999999
Q gi|254780132|r 147 LFGKN---HSYSFTIVN--NHLPTACRQVGLIRE 175 (186)
Q Consensus 147 ~~~~~---~~fD~iIiN--ddle~a~~~l~~Iie 175 (186)
+.... ..-|++|.- ..+++++++|..++.
T Consensus 267 l~~R~plY~~AD~~IdTsg~tvees~~~L~~lv~ 300 (304)
T PRK08154 267 LASREPLYARADAVVDTSGLTVEASLARLRELVR 300 (304)
T ss_pred HHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9987889986898987999999999999999999
No 78
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.84 E-value=1.4e-05 Score=54.60 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=47.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCCE-
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210---278187666612870-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDEY- 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~~- 77 (186)
|+.+.|+||||||||||++-|+.-++--...|. .||+|-.=++.+.+.+.+ .++-|+-.+++..|.
T Consensus 368 G~~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~----------idg~di~~~~~~~lr~~i~~V~Q~~~lF~~TI~eNi~ 437 (581)
T PRK11176 368 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL----------LDGHDLRDYTLASLRNQVALVSQNVHLFNDTVANNIA 437 (581)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEE----------ECCEEHHHCCHHHHHCCCCCCCCCCEEECCCHHHHHH
T ss_conf 944312289998678999999853667887487----------8988512147666503455607776110772999972
Q ss_pred EEE----ECCCHHHHHH
Q ss_conf 454----4220023343
Q gi|254780132|r 78 YGY----LKEDINNPME 90 (186)
Q Consensus 78 YGt----s~~~i~~~~~ 90 (186)
||- +.+++.++++
T Consensus 438 ~~~~~~~~~~~i~~a~~ 454 (581)
T PRK11176 438 YARTEQYSREQIEEAAR 454 (581)
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 26743245689999999
No 79
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.83 E-value=1.4e-05 Score=54.70 Aligned_cols=78 Identities=13% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCCE-
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210---278187666612870-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDEY- 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~~- 77 (186)
|+.+.|+||||||||||++-|+..++--...|. .||+|-.=++.+.+.+.+ .+.-|+-.+++..|.
T Consensus 341 Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~----------idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~eNI~ 410 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR----------FHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE----------EECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 978998799999879999999977642678746----------5010134257688863147658875025662999986
Q ss_pred EEEE---CCCHHHHH
Q ss_conf 4544---22002334
Q gi|254780132|r 78 YGYL---KEDINNPM 89 (186)
Q Consensus 78 YGts---~~~i~~~~ 89 (186)
||-+ .+++.+++
T Consensus 411 lg~~~~~~eei~~a~ 425 (569)
T PRK10789 411 LGRPDATQQEIEHVA 425 (569)
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 579776545899999
No 80
>PRK13949 shikimate kinase; Provisional
Probab=97.82 E-value=0.0001 Score=49.37 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9719999879999989999999851898179
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVM 31 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~ 31 (186)
|.+ |+|+|+.||||||+.+.|.++. ++.|
T Consensus 1 Mk~-I~LiG~mGsGKstiGk~La~~l-~~~f 29 (169)
T PRK13949 1 MAR-IFLVGYMGAGKTTLGKALAREL-GLSF 29 (169)
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHH-CCCE
T ss_conf 983-8997999998899999999995-9997
No 81
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.81 E-value=2.7e-05 Score=52.96 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=34.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|+.+.|+||||||||||++-|+.-++-....|. .||+|..=++.+.+.+.+
T Consensus 349 Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~G~I~----------idG~di~~~~~~~lR~~i 399 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL----------LDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHHC
T ss_conf 988999899999779999998289669998698----------999999968999998541
No 82
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=97.80 E-value=1.2e-05 Score=55.02 Aligned_cols=36 Identities=33% Similarity=0.295 Sum_probs=26.0
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 8799999899999998518981799860278889883
Q gi|254780132|r 8 IGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE 44 (186)
Q Consensus 8 ~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E 44 (186)
=|+-||||||+++.|.+....-...+ ++||+|+...
T Consensus 2 EGiDGsGKsTq~~~L~~~L~~~g~~v-~~~~ep~~~~ 37 (186)
T pfam02223 2 EGLDGAGKTTQAELLKERLKEQGIKV-VLTREPGGTP 37 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEE-EEEECCCCCH
T ss_conf 79999899999999999999879908-9974999983
No 83
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.80 E-value=8.2e-05 Score=50.01 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=64.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEE---C--CCCCCCCCCCCCCHHHCCHHH--HH------HHHCCCEEEE
Q ss_conf 9999879999989999999851898-1799860---2--788898833464201001455--42------2102781876
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGV---T--TRRPRVDEKQYIDYRFISQSQ--FK------GWKHTGLFIE 69 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~---T--TR~~R~~E~~g~dY~Fvs~~~--F~------~~i~~~~FiE 69 (186)
||-|+|-|||||||+++.+.+.+.. ...+++. = .|..|.. .+.. +...+. |. ...++|+=++
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r~~--~~~t--~~~P~And~dll~~~l~~Lk~Gk~i~ 76 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKE--TGIT--ALDPRANNFDLMYEQLKALKEGQAIE 76 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH--HCCC--CCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9899788878699999999998584876999657778899899987--1877--68975234999999999998599534
Q ss_pred EEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHH-----HHHHCCCCCEEEEHCCCCCHHHHHHHHH----HCCCCCH
Q ss_conf 666128704544220023343102420025420002-----4442054320000002321899998762----0145448
Q gi|254780132|r 70 TTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA-----PLKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDIP 140 (186)
Q Consensus 70 ~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~-----~lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~e~~ 140 (186)
--.| ++.-|+. +.-.. +. ...+|+ .+|.. .+++.+. +.|||.|+...++.+|+. .||...+
T Consensus 77 ~PvY-dh~tg~~-~~~e~-i~-p~diII---~EGLh~l~~~~lrdl~D---LkIfVD~d~dlr~~rKI~RD~~ERGyS~E 146 (273)
T cd02026 77 KPIY-NHVTGLI-DPPEL-IK-PTKIVV---IEGLHPLYDERVRELLD---FSVYLDISDEVKFAWKIQRDMAERGHSLE 146 (273)
T ss_pred CCCC-CCCCCCC-CCCEE-EC-CCCEEE---EECEECCCCHHHHHHHC---EEEEECCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 3222-1458965-77565-06-874799---92200026688986607---46885687647999987766766488999
Q ss_pred H---HHHHHH
Q ss_conf 9---999999
Q gi|254780132|r 141 F---NLDPDL 147 (186)
Q Consensus 141 ~---~i~~r~ 147 (186)
. .|.+|+
T Consensus 147 ~V~~~I~rR~ 156 (273)
T cd02026 147 DVLASIEARK 156 (273)
T ss_pred HHHHHHHHHH
T ss_conf 9999998604
No 84
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=3.1e-05 Score=52.56 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|+.+.|+||||||||||++.|+.-++-....| -+||.|..-++.+.+.+.+
T Consensus 28 Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I----------~i~g~~i~~~~~~~~r~~i 78 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFYDVDSGRI----------LIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE----------EECCEECCCCCHHHHHHCE
T ss_conf 99999998999829999999966766788689----------9999996608999997317
No 85
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.78 E-value=2.8e-05 Score=52.85 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 719999879999989999999851--8981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN--SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~--~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|..|=|+|||||||+||.| |+++ .|+-..+- +||.|=--+++.--..-+
T Consensus 491 Ge~IGIvGpSGSGKSTLTK-L~QRLYtP~~GqVL-----------VDG~DLA~~DP~wLRRQ~ 541 (703)
T TIGR01846 491 GEVIGIVGPSGSGKSTLTK-LLQRLYTPEHGQVL-----------VDGVDLAIADPAWLRRQV 541 (703)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHHCCCCCCEEE-----------ECCCCCCCCCCCHHHHCC
T ss_conf 6579987278986789999-98861488887477-----------703000101852010223
No 86
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=3.2e-05 Score=52.48 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|..+.|+||||||||||++.|+.-++-....|. +||.|..-++.+.+.+.+
T Consensus 27 Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~----------idg~di~~~~~~~~r~~i 77 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL----------IDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEE----------ECCEECCCCCHHHHHHCE
T ss_conf 999999999999899999997438548874899----------999992318999997237
No 87
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=97.78 E-value=9e-06 Score=55.82 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+|+.|++|||||||+||++.|...
T Consensus 35 ~k~sv~~G~SGVGKSTLiN~L~~~ 58 (161)
T pfam03193 35 GKTSVLAGQSGVGKSTLLNALLPE 58 (161)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 985999889998899999885634
No 88
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=97.78 E-value=2.1e-05 Score=53.61 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=42.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCC--CCCCHHHCCHHHHHHHHC---CCEEEEEEEEC
Q ss_conf 97199998799999899999998518-9817998602788898833--464201001455422102---78187666612
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNS-EYLVMPVGVTTRRPRVDEK--QYIDYRFISQSQFKGWKH---TGLFIETTKVR 74 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~-~~~~~~v~~TTR~~R~~E~--~g~dY~Fvs~~~F~~~i~---~~~FiE~~~~~ 74 (186)
|+.-+.|||||||||+||+|-|..-+ |+ |+-||+ +|.+=-=+++.+-++.|. +.=|+-.+.+=
T Consensus 499 ~n~k~tiVGmSGSGKsTLaKLLV~FfePQ-----------~~sG~I~Lng~~l~~iD~h~LRq~INYlPQeP~IF~GsIL 567 (710)
T TIGR01193 499 KNEKITIVGMSGSGKSTLAKLLVGFFEPQ-----------AESGEILLNGISLKDIDRHELRQFINYLPQEPYIFSGSIL 567 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC-----------CCCCEEEECCCCHHHCCHHHHCCCCCCCCCCCEEECCCHH
T ss_conf 78548997367974899998752035899-----------8877365278244533734441233556887845123178
Q ss_pred -----CCEEEEECCCHHHHH
Q ss_conf -----870454422002334
Q gi|254780132|r 75 -----DEYYGYLKEDINNPM 89 (186)
Q Consensus 75 -----g~~YGts~~~i~~~~ 89 (186)
|+.=|++.+.|.++.
T Consensus 568 eNLLlGak~~~~~~~i~~A~ 587 (710)
T TIGR01193 568 ENLLLGAKENVSQDEILKAV 587 (710)
T ss_pred HHHHHCCCCCCCHHHHHHHH
T ss_conf 87650378998989999884
No 89
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=97.77 E-value=1.8e-05 Score=54.04 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-C---CCEE-----EEEEECCCCCCCCCCCCCCHHHCC-HHHHHHHHCCCEEE
Q ss_conf 719999879999989999999851-8---9817-----998602788898833464201001-45542210278187
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-S---EYLV-----MPVGVTTRRPRVDEKQYIDYRFIS-QSQFKGWKHTGLFI 68 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~---~~~~-----~~v~~TTR~~R~~E~~g~dY~Fvs-~~~F~~~i~~~~Fi 68 (186)
|-+++|+||||||||||++.+..- . |.-. |.| | .+|.|=-=.. .++-.++..+=.++
T Consensus 28 GE~~~~IG~SGAGKSTLLR~iNrL~~Gdk~~~Geilidf~i---~-------~~g~~i~~~~~~k~LR~~R~~igMI 94 (253)
T TIGR02315 28 GEFVAVIGPSGAGKSTLLRCINRLVEGDKPSSGEILIDFSI---L-------LEGTDITKLRRGKKLRKLRRKIGMI 94 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEE---E-------ECCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 51799973788726799987753026888876508988888---8-------7273187675488999997643501
No 90
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=97.77 E-value=2e-05 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|..++|+||||||||||++.|-.+|
T Consensus 34 GEcv~L~G~SGaGKSTlLk~lYaNY 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 7358853688876789999766304
No 91
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.76 E-value=2.1e-05 Score=53.56 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99998799999899999998518981799
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP 32 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~ 32 (186)
-|||.||+||||.|.++.|.+++.-.+.+
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~hiS 30 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKHIN 30 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 79998999998799999999987990687
No 92
>PRK04195 replication factor C large subunit; Provisional
Probab=97.76 E-value=0.00041 Score=45.78 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=56.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEE---EEECCCCCCCCCCCCCCHHHCCHHH-HHHHH-CCCEEEEEEEECCCE
Q ss_conf 199998799999899999998518981799---8602788898833464201001455-42210-278187666612870
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMP---VGVTTRRPRVDEKQYIDYRFISQSQ-FKGWK-HTGLFIETTKVRDEY 77 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~---v~~TTR~~R~~E~~g~dY~Fvs~~~-F~~~i-~~~~FiE~~~~~g~~ 77 (186)
|.++|+||+|+||||++..|+.++. +... .| -.|.. +-+. .++.... ...+. ...+.+--.+++|-.
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~g-~~viElNAS-D~R~~-----~~I~-~~i~~~~~~~sl~~~~~KlIIlDEvD~l~ 112 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDYG-WEVIELNAS-DQRTK-----DVIE-RVAGEASTSGSLFGAKRKLILLDEVDGIH 112 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCEEEECCC-CCCCH-----HHHH-HHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 4699889399879999999999849-985997710-11478-----9999-99998760688778873499963434457
Q ss_pred ----EEEECCCHHHHHHHCCCCC-CCC-CCCH--HHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH
Q ss_conf ----4544220023343102420-025-4200--0244420543200000023218999987620
Q gi|254780132|r 78 ----YGYLKEDINNPMEHGYDIL-LIL-THQG--LAPLKKLYEDQVTSIFIAPPSEAELIQRRIK 134 (186)
Q Consensus 78 ----YGts~~~i~~~~~~g~~~i-l~i-d~~G--~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~ 134 (186)
.| ...++.+.+++.+.++ +.+ |+.. .+.|++. +..|-..||+...+.+||..
T Consensus 113 ~~~d~g-g~~al~~~ik~s~~PiIli~Nd~~~~~~~~lrs~----c~~i~F~~~~~~~I~~~L~~ 172 (403)
T PRK04195 113 GNADRG-GVRAILEIIKKAKNPIILTANDPYDPSLRPLRNA----CLMIEFKRLSKRSIVPVLKR 172 (403)
T ss_pred CHHHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH----HHHCCCCCCCHHHHHHHHHH
T ss_conf 244479-9999999985488708998268455671779976----61221799499999999999
No 93
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=1.3e-05 Score=54.84 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=40.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEE---------EEECCCCCCCCCCCCCCHHHCCH
Q ss_conf 7199998799999899999998518981799---------86027888988334642010014
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMP---------VGVTTRRPRVDEKQYIDYRFISQ 55 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~---------v~~TTR~~R~~E~~g~dY~Fvs~ 55 (186)
-++++|+||.+||||.|+-.|.++.+.-..+ ..--|=+|-..|..|+.||-++.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi 65 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDI 65 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECC
T ss_conf 637999898875778999999998299289302355318886307999999985899787545
No 94
>KOG1384 consensus
Probab=97.75 E-value=2.1e-05 Score=53.54 Aligned_cols=124 Identities=16% Similarity=0.247 Sum_probs=81.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-E--------EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEE
Q ss_conf 719999879999989999999851898-1--------7998602788898833464201001455422102781876666
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY-L--------VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTK 72 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~-~--------~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~ 72 (186)
.|++||+||.||||+.|+=.|..+++. + +--...+|-++-..|..|+.+|-+..-.++.....++
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~------ 80 (348)
T KOG1384 7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGE------ 80 (348)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCHHHCCCCCHHHHCCCCHHHHCCHHH------
T ss_conf 35999955777770466788897578646515633563276620166875540798767707688676426999------
Q ss_pred ECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH----HH-------------------HCCCCCEEEEHCCCCCHHHHH
Q ss_conf 1287045442200233431024200254200024----44-------------------205432000000232189999
Q gi|254780132|r 73 VRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LK-------------------KLYEDQVTSIFIAPPSEAELI 129 (186)
Q Consensus 73 ~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~----lk-------------------~~~~~~~~~IfI~pps~~~L~ 129 (186)
++-....+|+++...|+.+|+. -|... |- ..++.+++.+++.+ +..+|-
T Consensus 81 ----F~~~a~~aie~I~~rgk~PIv~---GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~VL~ 152 (348)
T KOG1384 81 ----FEDDASRAIEEIHSRGKLPIVV---GGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQAVLF 152 (348)
T ss_pred ----HHHHHHHHHHHHHHCCCCCEEE---CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CHHHHH
T ss_conf ----9999999999998579977796---78406689996068774558543567888755666507999726-667778
Q ss_pred HHHHHCCCCC
Q ss_conf 8762014544
Q gi|254780132|r 130 QRRIKRREDI 139 (186)
Q Consensus 130 ~RL~~R~~e~ 139 (186)
+||-+|-++.
T Consensus 153 ~~l~~RVD~M 162 (348)
T KOG1384 153 ERLDKRVDDM 162 (348)
T ss_pred HHHHHHHHHH
T ss_conf 8898889999
No 95
>KOG3079 consensus
Probab=97.75 E-value=5.4e-05 Score=51.08 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=90.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE
Q ss_conf 97199998799999899999998518981799860278889883346420100145542210278187666612870454
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt 80 (186)
|..||.++|++||||.|++.++.++++..+.+.----|.-+..+ |-+|-+ .-++++++|..+-....
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g~----~I~~~i~~G~iVP~ei~------- 73 (195)
T KOG3079 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERGA----LIKEIIKNGDLVPVEIT------- 73 (195)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEECHHHHHHHHHCCC--CCHHHH----HHHHHHHCCCCCCHHHH-------
T ss_conf 79889997689888226999999976954632879999988054--676789----99999986996748999-------
Q ss_pred ECCCHHHHHHHCCC---CCCCCCCCHHHHHH---HCCC-CCEEEEHCCCCCHHHHHHHHHHCC------CCCHHHHHHHH
Q ss_conf 42200233431024---20025420002444---2054-320000002321899998762014------54489999999
Q gi|254780132|r 81 LKEDINNPMEHGYD---ILLILTHQGLAPLK---KLYE-DQVTSIFIAPPSEAELIQRRIKRR------EDIPFNLDPDL 147 (186)
Q Consensus 81 s~~~i~~~~~~g~~---~il~id~~G~~~lk---~~~~-~~~~~IfI~pps~~~L~~RL~~R~------~e~~~~i~~r~ 147 (186)
.+=+.+.+.+-.. .|+|==|.-..|+. +... ..-+++|+..| .+.+.+|+..|+ +|..+.+.+|+
T Consensus 74 -~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikkR~ 151 (195)
T KOG3079 74 -LSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKKRL 151 (195)
T ss_pred -HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf -9999999996577883886589887688999998856787779998688-89999999960665787887557799999
Q ss_pred HHHHHC-------CC----EEEEC--CCHHHHHHHHHHHHH
Q ss_conf 986535-------98----89993--978999999999999
Q gi|254780132|r 148 FGKNHS-------YS----FTIVN--NHLPTACRQVGLIRE 175 (186)
Q Consensus 148 ~~~~~~-------fD----~iIiN--ddle~a~~~l~~Iie 175 (186)
..+... |+ ..-+| .+.++.+.++..+++
T Consensus 152 et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079 152 ETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred HHHHHCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99987001899998735968875177987889999998740
No 96
>pfam00406 ADK Adenylate kinase.
Probab=97.73 E-value=1.5e-05 Score=54.46 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=54.9
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECCCH
Q ss_conf 9879999989999999851898179986027888988334-642010014554221027818766661287045442200
Q gi|254780132|r 7 LIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ-YIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKEDI 85 (186)
Q Consensus 7 i~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~-g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~~i 85 (186)
|+||+||||+|.++.|.+.+.-.+++...-=|. |+. +.. .-.+..+.+++|.++--..+..-+ .+.+
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is~GdllR~----~~~~~s~----~g~~i~~~i~~G~lvpd~i~~~l~----~~~l 68 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLSTGDLLRA----EVKSGTE----LGKEAKEYMDKGELVPDEVVVGLV----KERL 68 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHH----HHHCCCH----HHHHHHHHHHCCCCCCHHHHHHHH----HHHH
T ss_conf 918898985999999999859906769999999----9862887----999999999869954309999999----9997
Q ss_pred HHHHHHCCCCCCCCCCCHHHH---HHHCC--CCC-EEEEHCCCCCHHHHHHHHHHCCC
Q ss_conf 233431024200254200024---44205--432-00000023218999987620145
Q gi|254780132|r 86 NNPMEHGYDILLILTHQGLAP---LKKLY--EDQ-VTSIFIAPPSEAELIQRRIKRRE 137 (186)
Q Consensus 86 ~~~~~~g~~~il~id~~G~~~---lk~~~--~~~-~~~IfI~pps~~~L~~RL~~R~~ 137 (186)
.+. ...+-.|+|==|.-..| |.+.+ ... ..+|++..| .+++.+||..|..
T Consensus 69 ~~~-~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~~-~~~~~~Rl~~R~~ 124 (186)
T pfam00406 69 EQN-DCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVP-DEVLVERLTGRRI 124 (186)
T ss_pred CCC-CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECC-HHHHHHHHHCCCC
T ss_conf 074-5548668737989899999999999749987779999737-8999999976641
No 97
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.73 E-value=2.4e-05 Score=53.25 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCC
Q ss_conf 719999879999989999999851-898
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEY 28 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~ 28 (186)
|..+.|+||||||||||+|-||.. .|.
T Consensus 28 G~F~FLtG~SGAGKttLLKLl~~~~~P~ 55 (215)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALTPS 55 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7407887277861789999998526987
No 98
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.73 E-value=1.2e-05 Score=55.01 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+|..+++||||+||+||++.|+...
T Consensus 161 ~k~~v~~G~SGvGKSSLiN~L~~~~ 185 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 9889998899888899998746212
No 99
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.72 E-value=4.6e-05 Score=51.50 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=36.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 71999987999998999999985189-81799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|+.+.|+|||||||+||++.|+.-++ .-. .|. +||.|..-++.+.+.+.+
T Consensus 28 G~~vaivG~sGsGKSTll~ll~gl~~p~~G-~I~----------i~g~di~~~~~~~~r~~i 78 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVL----------VDGHDLALADPAWLRRQV 78 (237)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEE----------ECCEECCCCCHHHHHHHC
T ss_conf 999999999998599999999677657987-899----------999995518999998601
No 100
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.71 E-value=2e-05 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 71999987999998999999985189817
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLV 30 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~ 30 (186)
|+++.||||||||||||++-| |+|.
T Consensus 388 G~~vALVGRSGSGKsTlv~Ll----PRFy 412 (603)
T TIGR02203 388 GETVALVGRSGSGKSTLVNLL----PRFY 412 (603)
T ss_pred CCEEEEECCCCCHHHHHHHHC----CCCC
T ss_conf 735998706885389998552----3660
No 101
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=97.71 E-value=2e-05 Score=53.69 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCHHHCCHHHHHHHHCCCEEE
Q ss_conf 719999879999989999999851898179986027888988334--6420100145542210278187
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFISQSQFKGWKHTGLFI 68 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~--g~dY~Fvs~~~F~~~i~~~~Fi 68 (186)
|-|+|+.||||||||||.. |+.- + |.+-.|+.. |.+=+=.++.+..+....=.||
T Consensus 31 GEiViltGPSGSGKTTLLt-LiG~---L--------R~~Q~G~L~vlg~~L~ga~~~~l~~~RR~iGyI 87 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLT-LIGG---L--------RSVQEGSLKVLGQELKGASKKELVQVRRNIGYI 87 (220)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHH---H--------CCCCCCEEEEECCHHCCCCHHHHHHHHHHCCCE
T ss_conf 6479843788984688999-8876---2--------565556047822010267888999998763914
No 102
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.70 E-value=4.3e-05 Score=51.70 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=46.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCCE-
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210---278187666612870-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDEY- 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~~- 77 (186)
|..+.|+||||||||||++-|+.-++--...| .+||+|-.=++.+...+.+ .++-++-.+++..|.
T Consensus 367 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I----------~idG~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNi~ 436 (593)
T PRK10790 367 RNFVALVGHTGSGKSTLASLLMGYYPLTEGEI----------RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVT 436 (593)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC----------CCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 97899879998868999999998556789941----------65993244246888863157516665145652999977
Q ss_pred EEEE
Q ss_conf 4544
Q gi|254780132|r 78 YGYL 81 (186)
Q Consensus 78 YGts 81 (186)
||.+
T Consensus 437 ~g~~ 440 (593)
T PRK10790 437 LGRD 440 (593)
T ss_pred HHCC
T ss_conf 6002
No 103
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.69 E-value=2.4e-05 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|+..+|+|+||+||+||+|.|+...
T Consensus 194 GkT~vl~G~SGVGKSTLiN~L~g~~ 218 (353)
T PRK01889 194 GKTVALLGSSGVGKSTLVNALLGEE 218 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 9789997788866999998756534
No 104
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=97.68 E-value=3.1e-05 Score=52.57 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHH
Q ss_conf 719999879999989999999851--898179986027888988334642010014554
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN--SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~--~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F 58 (186)
|-+||++|||||||||+++-| .+ .|.-..+- +||.+--=+|+.+.
T Consensus 19 GEi~vi~GlSGsGKsT~vrml-NRLIEPt~G~i~-----------IDG~~I~~~~~~eL 65 (372)
T TIGR01186 19 GEIFVIMGLSGSGKSTLVRML-NRLIEPTAGQIF-----------IDGENIMKISDVEL 65 (372)
T ss_pred CEEEEEECCCCCCHHHHHHHH-HHCCCCCCCCEE-----------ECCHHHHCCCHHHH
T ss_conf 438999778998578999998-722577787467-----------66214313693475
No 105
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=97.68 E-value=2.9e-05 Score=52.76 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEECCCCCCCCCCCCC------CHHHCCHHHHHHHHCCCEEEEEEEE
Q ss_conf 719999879999989999999851898--17998602788898833464------2010014554221027818766661
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY--LVMPVGVTTRRPRVDEKQYI------DYRFISQSQFKGWKHTGLFIETTKV 73 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~--~~~~v~~TTR~~R~~E~~g~------dY~Fvs~~~F~~~i~~~~FiE~~~~ 73 (186)
|-+|.|+|+||||||||+++|-++... +..-+- .| |++ |==|-.+|.-+.-.
T Consensus 19 g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~L-------DG--DnvR~gL~~dLGFS~~DR~eNIR----------- 78 (187)
T TIGR00455 19 GVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVL-------DG--DNVRHGLNKDLGFSEEDRKENIR----------- 78 (187)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE-------CC--CEEECCCCCCCCCCHHHHCCCCC-----------
T ss_conf 38985116885635799999999999669749997-------58--63424778888888567056883-----------
Q ss_pred CCCEEEEECCCHHHHH-HHCCCCCC-CCCCCH-----HHHHHHCCCCCEEEEHCCCCCHHHHHHH
Q ss_conf 2870454422002334-31024200-254200-----0244420543200000023218999987
Q gi|254780132|r 74 RDEYYGYLKEDINNPM-EHGYDILL-ILTHQG-----LAPLKKLYEDQVTSIFIAPPSEAELIQR 131 (186)
Q Consensus 74 ~g~~YGts~~~i~~~~-~~g~~~il-~id~~G-----~~~lk~~~~~~~~~IfI~pps~~~L~~R 131 (186)
-..+|.+.+ ++|.++|. -|.|-- ++.+-..++.+.+=|||..| +++=++|
T Consensus 79 -------RigEVa~L~~~~G~i~ltsfISPyR~~R~~vR~~~~~~Gl~F~Evfv~~P-L~vcE~R 135 (187)
T TIGR00455 79 -------RIGEVAKLLVRNGVIVLTSFISPYRADRQMVRELIEEGGLEFIEVFVKCP-LEVCEQR 135 (187)
T ss_pred -------EEHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC-HHHHCCC
T ss_conf -------53264677764793899842177666789998875405736899721788-6863268
No 106
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.68 E-value=6.9e-05 Score=50.44 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCCE
Q ss_conf 71999987999998999999985189-81799860278889883346420100145542210---278187666612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~~ 77 (186)
|+.+.|+||||||||||++.|+.-++ .-.. |. +||.|..=++.+.+.+.+ .+.-++-.+++..|.
T Consensus 29 G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~-I~----------idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi 97 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYDPTSGE-IL----------LDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EE----------ECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHH
T ss_conf 9999999999998999999982386188518-99----------999992318999997406999158967275299996
Q ss_pred -EEEE
Q ss_conf -4544
Q gi|254780132|r 78 -YGYL 81 (186)
Q Consensus 78 -YGts 81 (186)
||.+
T Consensus 98 ~~g~~ 102 (238)
T cd03249 98 RYGKP 102 (238)
T ss_pred HCCCC
T ss_conf 33687
No 107
>PRK13948 shikimate kinase; Provisional
Probab=97.68 E-value=0.00014 Score=48.52 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 19999879999989999999851898179
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVM 31 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~ 31 (186)
..|||+|+.||||||+.+.|.+.. ++.|
T Consensus 11 ~~IvLIG~mGsGKStiGk~LA~~l-~~~f 38 (182)
T PRK13948 11 TFVALAGFMGTGKSRIGWELSRAL-ALHF 38 (182)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH-CCCE
T ss_conf 818988999998899999999996-9598
No 108
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.67 E-value=7.1e-05 Score=50.39 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 99998799999899999998518981799860278889
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPR 41 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R 41 (186)
+|+|-|+-||||+|+++.|.+....-...+ .+||.|-
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~~g~~v-~~~~eP~ 38 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEV-VLTREPG 38 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCC
T ss_conf 899989989999999999999999779938-9986999
No 109
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.66 E-value=7.1e-06 Score=56.44 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHC----CHHHHHHHH-CCCEEEEEEEEC
Q ss_conf 9719999879999989999999851898-1799860278889883346420100----145542210-278187666612
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFI----SQSQFKGWK-HTGLFIETTKVR 74 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~TTR~~R~~E~~g~dY~Fv----s~~~F~~~i-~~~~FiE~~~~~ 74 (186)
||..|||=|+-||||||+++.|.+..+. -.+. -+-||+|..+-+ |.--.=+ ..+....+- +.-.+|-.+-=+
T Consensus 1 m~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~-~~~t~EPg~t~~-ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~ 78 (211)
T TIGR00041 1 MGMFIVIEGIDGAGKTTQLNLLKKLLKELEGYK-VLFTREPGGTPI-GEKIRELLQDLLNENEEPLTDKTEALLFAADRH 78 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCE-EEEEECCCCCHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 974588851158758999999999977513834-788718999878-999999999874146663359999999998589
Q ss_pred CCEEEEECCCHHHHHHHCCCCCCC---------------CCCCHHHHHHHCCCC--CE-EEEHCCCCCHHHHHHHHHHCC
Q ss_conf 870454422002334310242002---------------542000244420543--20-000002321899998762014
Q gi|254780132|r 75 DEYYGYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--QV-TSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 75 g~~YGts~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~~-~~IfI~pps~~~L~~RL~~R~ 136 (186)
.|+|= ..+-|+.++.+|+.||.| +|+.=+..|.+..+- .| ++||+.. +.++-.+|+.+|+
T Consensus 79 ~HL~~-~~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~-d~e~al~R~~~~g 156 (211)
T TIGR00041 79 DHLEH-VEEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDI-DPEVALERLRKRG 156 (211)
T ss_pred HHHHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE-CHHHHHHHHHCCC
T ss_conf 99997-898778898669679984112435777542256888899999775211358666898860-7377988752047
Q ss_pred C
Q ss_conf 5
Q gi|254780132|r 137 E 137 (186)
Q Consensus 137 ~ 137 (186)
.
T Consensus 157 ~ 157 (211)
T TIGR00041 157 E 157 (211)
T ss_pred C
T ss_conf 2
No 110
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=97.65 E-value=0.00038 Score=45.97 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=85.6
Q ss_pred EEEEECCCCCCH----HHHHHHHHHHCCC--EEEE-EE----ECCC--CCCCCCCCCCCHHHCCHHHHHHH--------H
Q ss_conf 999987999998----9999999851898--1799-86----0278--88988334642010014554221--------0
Q gi|254780132|r 4 IFVLIGASGVGK----TTIAKQVVLNSEY--LVMP-VG----VTTR--RPRVDEKQYIDYRFISQSQFKGW--------K 62 (186)
Q Consensus 4 iivi~GpsGsGK----~tl~~~L~~~~~~--~~~~-v~----~TTR--~~R~~E~~g~dY~Fvs~~~F~~~--------i 62 (186)
||-|+|.||||| ||+++++.+..+. ..++ ++ |=.- .-++-+ +-..+.|=-++.|... .
T Consensus 12 iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~-~r~~~NfDHP~AfD~~Ll~~Hl~nL 90 (220)
T TIGR00235 12 IIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMA-ERKKTNFDHPDAFDNDLLYEHLKNL 90 (220)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHH-HHHCCCCCCCHHCCHHHHHHHHHHH
T ss_conf 997017661015678999999999983140014577503244588988731246-4312588980030379999999998
Q ss_pred CCCEEEEEEEECCC-EEEE-ECCCHHHHHHHCCCCCCCCCCCHHHHH-----HHCCCCCEEEEHCCCCCHHHHHHHHH--
Q ss_conf 27818766661287-0454-422002334310242002542000244-----42054320000002321899998762--
Q gi|254780132|r 63 HTGLFIETTKVRDE-YYGY-LKEDINNPMEHGYDILLILTHQGLAPL-----KKLYEDQVTSIFIAPPSEAELIQRRI-- 133 (186)
Q Consensus 63 ~~~~FiE~~~~~g~-~YGt-s~~~i~~~~~~g~~~il~id~~G~~~l-----k~~~~~~~~~IfI~pps~~~L~~RL~-- 133 (186)
++|.-++-=-| .+ .|-- +. +.+.=.++.++. ++|..-+ ++... +.|||.+|....|.+||.
T Consensus 91 k~g~~~~~P~Y-dyv~HtRv~~---eT~~~~P~~VvI---lEGi~~l~D~Rl~~L~d---lkifvDt~~D~rliRRl~RD 160 (220)
T TIGR00235 91 KNGSAIDVPVY-DYVNHTRVKK---ETVHVEPKDVVI---LEGILLLTDERLRDLMD---LKIFVDTPLDIRLIRRLERD 160 (220)
T ss_pred HCCCEECCCCC-CCCCEECCCC---CCEEECCEEEEE---EECCHHHHHHHHHHHHC---CEEEEECCCHHHHHHHHHHH
T ss_conf 46880224542-5410020255---626873506899---70618888799988718---23677468303256565655
Q ss_pred --HCCCCCHHHHHHHHHHHH-----------HCCCEEEEC-CCHHHHHHHHHHHHHH
Q ss_conf --014544899999999865-----------359889993-9789999999999999
Q gi|254780132|r 134 --KRREDIPFNLDPDLFGKN-----------HSYSFTIVN-NHLPTACRQVGLIREF 176 (186)
Q Consensus 134 --~R~~e~~~~i~~r~~~~~-----------~~fD~iIiN-ddle~a~~~l~~Iie~ 176 (186)
+||++.+..|++-..... .+-|.+|-. .+=+.|+.=|..-|+.
T Consensus 161 ~~~RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I~~ 217 (220)
T TIGR00235 161 IEERGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKIKS 217 (220)
T ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 754289788999999985346210145501014667625898816889999999998
No 111
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.64 E-value=0.00029 Score=46.71 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999879999989999999851898179
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVM 31 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~ 31 (186)
+|.|.|||||||+|+++.|.+.+ ++.+
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l-~~~~ 27 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPY 27 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCEE
T ss_conf 98886899789899999999990-9907
No 112
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.64 E-value=0.00012 Score=48.97 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=33.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEE
Q ss_conf 719999879999989999999851-8981799860278889883346420100145542210278187
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI 68 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~Fi 68 (186)
|.++.|+||||||||||++-+..- .|.-.- |. ++|++..-.+.++......+=.|+
T Consensus 27 Ge~v~i~GpSGsGKSTLl~~i~gl~~p~sG~-i~----------i~g~~~~~~~~~~~~~~Rr~iG~V 83 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTSGT-IR----------VNGQDVSDLRGRAIPYLRRKIGVV 83 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EE----------ECCEECCCCCHHHHHHHHCCEEEE
T ss_conf 9899999799953999999996298988649-99----------999998989977899986674999
No 113
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.61 E-value=5e-05 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|.+++|+|||||||+||.+.|..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 97899989999988899999977
No 114
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.60 E-value=5.3e-05 Score=51.14 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=39.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-C-CCEEEEEEECCCCCCCCCCCCC-----CHHHCCHHHHHHHHCCCEEEEEEEEC
Q ss_conf 719999879999989999999851-8-9817998602788898833464-----20100145542210278187666612
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-S-EYLVMPVGVTTRRPRVDEKQYI-----DYRFISQSQFKGWKHTGLFIETTKVR 74 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~-~~~~~~v~~TTR~~R~~E~~g~-----dY~Fvs~~~F~~~i~~~~FiE~~~~~ 74 (186)
|+...|||||||||+|++. |+++ | |.-+-+. .||+ |+||+-+.-- ...+.=.+-.+.+.
T Consensus 559 G~vvALVGPsGsGKStvaa-LL~n~Y~Pt~G~vL-----------lDg~Pl~~y~H~YLH~~V~--~VgQEPvLf~gSvr 624 (770)
T TIGR00958 559 GEVVALVGPSGSGKSTVAA-LLQNLYQPTGGQVL-----------LDGVPLSQYDHHYLHRQVA--LVGQEPVLFSGSVR 624 (770)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHCCCCCCCEEE-----------ECCCCHHHHCCEECCCEEE--EEECCCEECCCCHH
T ss_conf 6259986589983999999-99855789865687-----------7684613326501000254--33205430246316
Q ss_pred CCE-EEEECCC-HHHHHH
Q ss_conf 870-4544220-023343
Q gi|254780132|r 75 DEY-YGYLKED-INNPME 90 (186)
Q Consensus 75 g~~-YGts~~~-i~~~~~ 90 (186)
.|- ||....+ =+++.+
T Consensus 625 ~NIaYGL~~~~T~~~~~a 642 (770)
T TIGR00958 625 ENIAYGLTKTPTDEEVTA 642 (770)
T ss_pred HHHHHCCCCCCCHHHHHH
T ss_conf 656516899982789999
No 115
>PRK13973 thymidylate kinase; Provisional
Probab=97.60 E-value=8.8e-05 Score=49.80 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=76.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCE----------EEEEE
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102781----------87666
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGL----------FIETT 71 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~----------FiE~~ 71 (186)
|++||+=|.-||||+|.++.|.+....-... .++||.|-.... | +...+++.++. ++-.+
T Consensus 3 G~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~-v~~trePg~t~~-~--------e~ir~~ll~~~~~~~~~~~e~lLfaA 72 (216)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYD-VLVTREPGGSPG-A--------EAIRHVLLSGAAELYGPAMEALLFAA 72 (216)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCC-H--------HHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 2499988999998999999999999977995-799409899840-8--------99999984666578998999999999
Q ss_pred EECCCEEEEECCCHHHHHHHCCCCCCCCCC------CHH---------HHHHHCC---CCCEEEEHCCCCCHHHHHHHHH
Q ss_conf 612870454422002334310242002542------000---------2444205---4320000002321899998762
Q gi|254780132|r 72 KVRDEYYGYLKEDINNPMEHGYDILLILTH------QGL---------APLKKLY---EDQVTSIFIAPPSEAELIQRRI 133 (186)
Q Consensus 72 ~~~g~~YGts~~~i~~~~~~g~~~il~id~------~G~---------~~lk~~~---~~~~~~IfI~pps~~~L~~RL~ 133 (186)
.-..+ ...-|...+++|++||.|==+ ||+ ..+.+.. +..-++||+..| .++-.+|+.
T Consensus 73 ~R~eh----~~~~I~paL~~g~~VI~DRy~~Ss~AYQg~~~~~~~~~l~~l~~~~~~~~~PDlti~LDv~-~e~a~~R~~ 147 (216)
T PRK13973 73 ARDDH----VEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIP-AEVGLERAA 147 (216)
T ss_pred HHHHH----HHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHHHHHH
T ss_conf 99999----9999999997799898678625799997742788989999999999679999989998188-899999999
Q ss_pred HCCC-CCHHHH-------HHHH----HHHHH-C-CCEEEEC--CCHHHHHHHHHHHHHHHH
Q ss_conf 0145-448999-------9999----98653-5-9889993--978999999999999997
Q gi|254780132|r 134 KRRE-DIPFNL-------DPDL----FGKNH-S-YSFTIVN--NHLPTACRQVGLIREFVK 178 (186)
Q Consensus 134 ~R~~-e~~~~i-------~~r~----~~~~~-~-fD~iIiN--ddle~a~~~l~~Iie~l~ 178 (186)
+|+. +..... ..+. ..... + -.+++++ .++++..++|..+++..-
T Consensus 148 ~R~~~~~~dr~E~~~~~f~~kVr~~Y~~la~~~~~r~~vIDa~~s~eeV~~~I~~~v~~~L 208 (216)
T PRK13973 148 KRRGSETPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDADASPEAVAAEIWAAVDQRL 208 (216)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 8357763002556479999999999999998598878997199999999999999999986
No 116
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00018 Score=47.92 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC
Q ss_conf 7199998799999899999998518-9817998602788898833464201001455422102
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~-~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~ 63 (186)
|.++.|+||||||||||.+.+..-. |.-.- |. .+|++-.-.+..+..+..+
T Consensus 27 Ge~~~iiGpsGsGKSTLl~~i~gl~~p~~G~-I~----------~~g~~i~~~~~~~l~~~R~ 78 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVEPTSGS-VL----------IDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EE----------ECCEECCCCCHHHHHHHHC
T ss_conf 9899999999833999999997499998559-99----------9999989899899999864
No 117
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00011 Score=49.17 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|+.++|+||||||||||++.|+..++--.-.|. .||.+..=++.+++.+.+
T Consensus 29 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~----------idg~~i~~~~~~~~r~~i 79 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL----------IDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHCE
T ss_conf 999999999998099999999668667873899----------999995418999996328
No 118
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00024 Score=47.22 Aligned_cols=146 Identities=18% Similarity=0.180 Sum_probs=68.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE------ECCCCCC-CCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEE
Q ss_conf 9719999879999989999999851898179986------0278889-88334642010014554221027818766661
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG------VTTRRPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~------~TTR~~R-~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~ 73 (186)
|.+-|||+|+-|||||||-+.|.+.. ++.|.=+ .+-.+.. --|.+|.+| |.. +|
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~-------FR~-------~E---- 61 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIEKRTGMSIAEIFEEEGEEG-------FRR-------LE---- 61 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-------HHH-------HH----
T ss_conf 99618997179997768999999981-998022469999997969999999982899-------999-------99----
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCHH----HHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC------CCCH-H-
Q ss_conf 2870454422002334310242002542000----24442054320000002321899998762014------5448-9-
Q gi|254780132|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGL----APLKKLYEDQVTSIFIAPPSEAELIQRRIKRR------EDIP-F- 141 (186)
Q Consensus 74 ~g~~YGts~~~i~~~~~~g~~~il~id~~G~----~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~------~e~~-~- 141 (186)
...+.+....+. +++- .-|. ..-++......++||+.. +.+.|.+|+.... ...+ +
T Consensus 62 --------~~vl~~l~~~~~-~Via--TGGG~v~~~enr~~l~~~g~vv~L~~-~~e~l~~Rl~~~~~RPll~~~~~~~~ 129 (172)
T COG0703 62 --------TEVLKELLEEDN-AVIA--TGGGAVLSEENRNLLKKRGIVVYLDA-PFETLYERLQRDRKRPLLQTEDPREE 129 (172)
T ss_pred --------HHHHHHHHHCCC-EEEE--CCCCCCCCHHHHHHHHHCCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf --------999999862699-5997--79861168999999984885899969-99999998234667986567776899
Q ss_pred ---HHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHHHHHHHC
Q ss_conf ---9999999865359889993978-99999999999999730
Q gi|254780132|r 142 ---NLDPDLFGKNHSYSFTIVNNHL-PTACRQVGLIREFVKRG 180 (186)
Q Consensus 142 ---~i~~r~~~~~~~fD~iIiNddl-e~a~~~l~~Iie~l~~~ 180 (186)
-.++|.--+...-|+++..++- +..+++ |++.+...
T Consensus 130 l~~L~~~R~~~Y~e~a~~~~~~~~~~~~v~~~---i~~~l~~~ 169 (172)
T COG0703 130 LEELLEERQPLYREVADFIIDTDDRSEEVVEE---ILEALEGS 169 (172)
T ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH---HHHHHHHH
T ss_conf 99999998999997274884489984899999---99999873
No 119
>PRK12338 hypothetical protein; Provisional
Probab=97.56 E-value=0.00025 Score=47.09 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=72.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHH-----------HHHHHCCCEEEEEE-
Q ss_conf 999987999998999999985189817998602788898833464201001455-----------42210278187666-
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQ-----------FKGWKHTGLFIETT- 71 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~-----------F~~~i~~~~FiE~~- 71 (186)
+|.|.|+||+||+||+..|..+. ++..++|.-+ .|. +=--|+++++ .+.+.....+..-.
T Consensus 6 iILiGGtSGvGKSTlAseLAsRL-gI~tvIsTDs--IRe-----vmR~~is~e~~P~L~~STY~A~~~Lr~~~~~~~~~~ 77 (320)
T PRK12338 6 VILIGSASGIGKSTIASEVARRL-NIKHLIETDF--IRE-----VVRGIIGKEYAPALHMSSYNAYTALRDKDHFVPKRF 77 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCEEECCHH--HHH-----HHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99970688876888999999851-9871103347--999-----999833804153455420267887267423577411
Q ss_pred ---EECCC-----EEEEECC-CHHHHHHHCCCCCCC---CCCCHHHHHHHCC--CCCEEEEHCCCCCHHHHHHHHHHCCC
Q ss_conf ---61287-----0454422-002334310242002---5420002444205--43200000023218999987620145
Q gi|254780132|r 72 ---KVRDE-----YYGYLKE-DINNPMEHGYDILLI---LTHQGLAPLKKLY--EDQVTSIFIAPPSEAELIQRRIKRRE 137 (186)
Q Consensus 72 ---~~~g~-----~YGts~~-~i~~~~~~g~~~il~---id~~G~~~lk~~~--~~~~~~IfI~pps~~~L~~RL~~R~~ 137 (186)
-..|. .-=...+ -|+.++..|.+++++ +.| |.....+.+ ..-++.|++. +.+...+|...|..
T Consensus 78 ~~~vi~Gfe~q~e~V~~~le~vI~r~~~~~~sivIEGVHLvP-gfi~~~~~~~~~~i~F~i~~~--~E~kH~eRF~~Rak 154 (320)
T PRK12338 78 EELVIAGFEEHASFVIPAIEKVIKRAVTDADDIVIEGVHLVP-GLINIEQFYEYANIHFFILYA--DEEEHKERFVKRAM 154 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECH-HHCCHHHHCCCCCCEEEEEEC--CHHHHHHHHHHHHH
T ss_conf 678999999998999999999999998648867998453055-550576622666636999981--76899999999998
Q ss_pred CCHH------------HHHHHHHHHHHCCCE-EEECCCHHHHHHHHHH-HHHH
Q ss_conf 4489------------999999986535988-9993978999999999-9999
Q gi|254780132|r 138 DIPF------------NLDPDLFGKNHSYSF-TIVNNHLPTACRQVGL-IREF 176 (186)
Q Consensus 138 e~~~------------~i~~r~~~~~~~fD~-iIiNddle~a~~~l~~-Iie~ 176 (186)
.... .|+.-+...+.++.. +|-|.+++.++.++.. |.+.
T Consensus 155 ~m~r~~Kyvkyf~niR~Iqd~L~~~Adeh~iP~I~N~nid~sV~~i~~~I~~~ 207 (320)
T PRK12338 155 EIKRGGKHLEYFRENRIIHDFLVSQADEHGIPVIKNDDIDRTVSKVLSVIREV 207 (320)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 85026508999998899999998416761997304763556899999999987
No 120
>KOG3347 consensus
Probab=97.56 E-value=0.00073 Score=44.25 Aligned_cols=146 Identities=15% Similarity=0.209 Sum_probs=74.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-----CCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 999879999989999999851898179986027888988334-----642010014554221027818766661287045
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ-----YIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~-----g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
|+|.|.+|+||+|++.+|.+.. ++.+. ...+-.++++-. +-+-|+++++.
T Consensus 10 ILvtGTPG~GKstl~~~lae~~-~~~~i--~isd~vkEn~l~~gyDE~y~c~i~DEdk---------------------- 64 (176)
T KOG3347 10 ILVTGTPGTGKSTLAERLAEKT-GLEYI--EISDLVKENNLYEGYDEEYKCHILDEDK---------------------- 64 (176)
T ss_pred EEEECCCCCCCHHHHHHHHHHH-CCCEE--EHHHHHHHHCCHHCCCCCCCCCCCCHHH----------------------
T ss_conf 7986799988025999999973-98567--4556776611021023223675456789----------------------
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHH----HHHH-----HHH
Q ss_conf 4422002334310242002542000244420543200000023218999987620145448999----9999-----986
Q gi|254780132|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNL----DPDL-----FGK 150 (186)
Q Consensus 80 ts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i----~~r~-----~~~ 150 (186)
..+.++..+.+|. +|+ |+.|.--..... ++.++| +..| ...|-.||..||= ++..| +-.+ ..+
T Consensus 65 -v~D~Le~~m~~Gg-~IV--DyHgCd~Fperw-fdlVvV-Lr~~-~s~LY~RL~sRgY-~e~Ki~eNiecEIfgv~~eea 136 (176)
T KOG3347 65 -VLDELEPLMIEGG-NIV--DYHGCDFFPERW-FDLVVV-LRTP-NSVLYDRLKSRGY-SEKKIKENIECEIFGVVLEEA 136 (176)
T ss_pred -HHHHHHHHHHCCC-CEE--EECCCCCCCHHH-EEEEEE-EECC-CHHHHHHHHHCCC-CHHHHHHHCCHHHHHHHHHHH
T ss_conf -9988889875688-488--600567650113-557999-9468-4599999997588-888876510158999999999
Q ss_pred HHCCCEEEE----CCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 535988999----397899999999999999730125
Q gi|254780132|r 151 NHSYSFTIV----NNHLPTACRQVGLIREFVKRGKKA 183 (186)
Q Consensus 151 ~~~fD~iIi----Nddle~a~~~l~~Iie~l~~~~~~ 183 (186)
...|+--|+ .+.-+++...+..|..-.+.+++.
T Consensus 137 ~eSy~~~iV~eL~s~~~Eem~~ni~ri~~w~~~w~~~ 173 (176)
T KOG3347 137 RESYSPKIVVELQSETKEEMESNISRILNWTRMWKKP 173 (176)
T ss_pred HHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9871874213347677899999899999999987511
No 121
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.56 E-value=7.2e-05 Score=50.34 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=33.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHH
Q ss_conf 719999879999989999999851898179986027888988334642010014554
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F 58 (186)
|..+.|+||||||||||++-|.---+...-.|+ .||-|-.=.++|.|
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~~~~G~VR----------LDGadl~qWD~e~l 402 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWPPASGSVR----------LDGADLKQWDRETL 402 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE----------EEHHHHHCCCHHHC
T ss_conf 745888747865258898788721013565336----------40334402375365
No 122
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.55 E-value=4e-05 Score=51.92 Aligned_cols=24 Identities=42% Similarity=0.699 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+++-|++|+||+||+||+++|...
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 884999888877699988741721
No 123
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.55 E-value=0.00011 Score=49.14 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883--34642010014554221
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGW 61 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~ 61 (186)
|+.+.|+||||||||||++.|+.-++ |..|+ .||.+-.=++.+.+.+.
T Consensus 40 Ge~vaIvG~sGsGKSTL~~ll~gl~~------------p~~G~I~idg~~i~~~~~~~lr~~ 89 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENFYQ------------PQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEEHHHCCHHHHHHC
T ss_conf 99999999999849999999964546------------788789999999344899999732
No 124
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.55 E-value=0.0019 Score=41.70 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 999987999998999999985189
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
||.|=|||||||+|+++.|.++..
T Consensus 444 IIaIDGpagsGKsT~ak~lA~~l~ 467 (662)
T PRK11860 444 VICIDGPTASGKGTLAAAVAQALG 467 (662)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899657875686899999999959
No 125
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=97.54 E-value=6.5e-05 Score=50.61 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=36.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCHHHCCHH-HHHHH
Q ss_conf 7199998799999899999998518-981799860278889883346420100145-54221
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQS-QFKGW 61 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~-~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~-~F~~~ 61 (186)
|+++.|+||||+|||||.+.|+--- |.-.. |. =.|+|-.||++=-=.+.+ ...+.
T Consensus 378 G~~vAl~G~SGaGKSTLL~lLLGf~~P~~G~-i~----v~~~Gg~~G~~L~~~~~~W~W~~~ 434 (570)
T TIGR02857 378 GERVALVGPSGAGKSTLLNLLLGFVEPTEGA-IV----VERDGGINGVPLAEADADWSWRDQ 434 (570)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCE-EE----EECCCCCCCCCCCCCCHHHHHHHC
T ss_conf 7048886279997889999997157644646-88----744888539764211310225541
No 126
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.54 E-value=0.00015 Score=48.42 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHH
Q ss_conf 71999987999998999999985189817998602788898833464201001455422
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~ 60 (186)
|..+.|+||||||||||++.|+..++-..-.| .+||+|..-++.+...+
T Consensus 34 Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G~I----------~idg~di~~~~~~~~r~ 82 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFLEAEEGKI----------EIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----------EECCEECCCCCHHHHHH
T ss_conf 99999999999879999999998728888789----------99999954079999995
No 127
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.54 E-value=0.00015 Score=48.50 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883--34642010014554221
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGW 61 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~ 61 (186)
|.++.|+||||||||||++.|+.-.+ |..|+ .+|++..-++.+.+.+.
T Consensus 33 Ge~~~i~G~sGsGKSTLlk~i~gl~~------------p~~G~I~~~g~~i~~~~~~~~r~~ 82 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHH
T ss_conf 96999999999999999999964668------------887659999999774999999852
No 128
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.53 E-value=0.00013 Score=48.83 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|..+.|+||||||||||++.|+.-++-..-.| .+||++-.=++.+.+.+.+
T Consensus 30 G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I----------~i~g~~~~~~~~~~~r~~i 80 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV----------LLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE----------EECCEEHHHHCHHHHHHCE
T ss_conf 99999999999859999999967254786589----------9999995772599997326
No 129
>PRK08118 topology modulation protein; Reviewed
Probab=97.53 E-value=7.8e-05 Score=50.14 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=37.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 971999987999998999999985189817998602788-8988334642010014554221027818766661287045
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRR-PRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~-~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
|.||.| +|+||||||||+++|.+.. ++... |.-.- =.+| .. -.++++|.++.+.=-=-+.|.+.|||..
T Consensus 1 M~rI~I-iG~~GsGKSTlAr~L~~~~-~ip~~--~LD~l~w~~~---w~---~~~~~e~~~~~~~~~~~~~WIidGny~~ 70 (167)
T PRK08118 1 MKKIIL-IGSGGSGKSTLARQLGEKL-NIPVH--HLDALFWKPN---WE---GVPKEEQRTVQNELVKEDEWIIDGNYGG 70 (167)
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHH-CCCEE--ECCCEEECCC---CC---CCCHHHHHHHHHHHHHCCCEEEECCCHH
T ss_conf 967999-8899987999999999988-96979--6443476689---94---6888999999999983898799477177
No 130
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.53 E-value=0.00024 Score=47.17 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCC--------------CCCCC---CCC-------CHHHCCH
Q ss_conf 97199998799999899999998518981799-86027888--------------98833---464-------2010014
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRP--------------RVDEK---QYI-------DYRFISQ 55 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~-v~~TTR~~--------------R~~E~---~g~-------dY~Fvs~ 55 (186)
|..+|-|+|-.||||||+++.+.+ . ++... ---..|.. +..+. ||. .+.|-+.
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~ 78 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDP 78 (201)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-C-CCEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 964999957887788999999997-7-99399886999998845635789999984997656651058999999973899
Q ss_pred HHHHHHHCCCEEEEEEEECCCEEEEECCCH---HHHHHHCCCCCCCCCCCHHHHHHHCCCCC-E-EEEHCCCCCHHHHHH
Q ss_conf 554221027818766661287045442200---23343102420025420002444205432-0-000002321899998
Q gi|254780132|r 56 SQFKGWKHTGLFIETTKVRDEYYGYLKEDI---NNPMEHGYDILLILTHQGLAPLKKLYEDQ-V-TSIFIAPPSEAELIQ 130 (186)
Q Consensus 56 ~~F~~~i~~~~FiE~~~~~g~~YGts~~~i---~~~~~~g~~~il~id~~G~~~lk~~~~~~-~-~~IfI~pps~~~L~~ 130 (186)
++-..+-+ +.| . ...+.+ .+....+ .+++++. -|.+..+.. + ++|.|.+| .+.-.+
T Consensus 79 ~~~~~Le~----i~h----P----li~~~~~~~~~~~~~~-~~~~eip-----lL~e~~~~~~~d~Vi~V~a~-~e~r~e 139 (201)
T COG0237 79 EARLKLEK----ILH----P----LIRAEIKVVIDGARSP-YVVLEIP-----LLFEAGGEKYFDKVIVVYAP-PEIRLE 139 (201)
T ss_pred HHHHHHHH----HHH----H----HHHHHHHHHHHHHHCC-CEEEEEH-----HHHHHCCCCCCCEEEEEECC-HHHHHH
T ss_conf 99999996----655----8----9999999999974167-6388707-----88872666668889999899-999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHH------HCCCEEEECC-CHHHHHHHHHHHHHHHHHC
Q ss_conf 762014544899999999865------3598899939-7899999999999999730
Q gi|254780132|r 131 RRIKRREDIPFNLDPDLFGKN------HSYSFTIVNN-HLPTACRQVGLIREFVKRG 180 (186)
Q Consensus 131 RL~~R~~e~~~~i~~r~~~~~------~~fD~iIiNd-dle~a~~~l~~Iie~l~~~ 180 (186)
|+.+|+..+.+....++.... ..-|+++.|+ +++...+++..+...+...
T Consensus 140 Rl~~R~~~~~e~~~~~~~~Q~~~~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 140 RLMKRDGLDEEDAEARLASQRDLEEKLALADVVIDNDGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred HHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 998337999999999998738999986314647664877999999999999999876
No 131
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.52 E-value=0.00013 Score=48.84 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999879999989999999851898179
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVM 31 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~ 31 (186)
|+|+|++||||||+.+.|.+.. ++.+
T Consensus 2 I~LiG~~G~GKstigk~la~~l-~~~f 27 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-GLPF 27 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCE
T ss_conf 8998899998899999999997-9897
No 132
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.51 E-value=0.00035 Score=46.19 Aligned_cols=168 Identities=15% Similarity=0.212 Sum_probs=77.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC-----CCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEEC-CCE
Q ss_conf 9999879999989999999851898179986027-----8889883346420100145542210278187666612-870
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT-----RRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVR-DEY 77 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT-----R~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~-g~~ 77 (186)
+|.|-|.||+||+||+..|..+. ++..++|.-| |..-.-|..- .-|--|=..++.+...+.=.+-.... -..
T Consensus 264 iILIGGaSGvGKSTlAseLA~RL-GI~~VIsTDsIREVMR~~is~el~P-~Lh~SSy~Awk~L~~~~~~~~~~~~~~~vi 341 (492)
T PRK12337 264 HVLLGGVSGTGKSVLAAELAYRL-GITRVVPTDAIREVMRAMVSKDLLP-TLHASTFNAWEALVPPGLGLPGEPTRVELL 341 (492)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCHHHCC-HHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 99960788866888999999960-9881025447999999845976484-577755688886087345777786076899
Q ss_pred EEE---------ECC-CHHHHHHHCCCCCCCCCCCHHH----HHHHCC--CCCEEEEHCCCCCHHHHHHHHHHCCCCCH-
Q ss_conf 454---------422-0023343102420025420002----444205--43200000023218999987620145448-
Q gi|254780132|r 78 YGY---------LKE-DINNPMEHGYDILLILTHQGLA----PLKKLY--EDQVTSIFIAPPSEAELIQRRIKRREDIP- 140 (186)
Q Consensus 78 YGt---------s~~-~i~~~~~~g~~~il~id~~G~~----~lk~~~--~~~~~~IfI~pps~~~L~~RL~~R~~e~~- 140 (186)
+|- ..+ =|+..+..|-++|+ +|+. .++... ...++.+.|..|+.+..++|...|+.++.
T Consensus 342 ~GF~~Qv~~V~vGl~aVieRa~~EG~SvVI----EGVHLvPg~i~~~~~e~~~vIp~mV~i~dEe~Hr~RF~~R~r~t~~ 417 (492)
T PRK12337 342 AGFRDQVQQVSVGLKAVVRRSILEGTSLVL----EGVHLVPGYLQHAYQDGALTVPMLVALPDEEEHRRHFELRDRETAA 417 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEE----EEEEECHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 899999999999999999999972886799----8333070666666415873899999847679999999987514103
Q ss_pred --------------HHHHHHHHHHHHCCCE-EEECCCHHHHHHHH-HHHHHHH
Q ss_conf --------------9999999986535988-99939789999999-9999999
Q gi|254780132|r 141 --------------FNLDPDLFGKNHSYSF-TIVNNHLPTACRQV-GLIREFV 177 (186)
Q Consensus 141 --------------~~i~~r~~~~~~~fD~-iIiNddle~a~~~l-~~Iie~l 177 (186)
..|+.-+.....++.. +|.|.|+++++.+. ..|.+.+
T Consensus 418 ~Rp~ekYLk~F~eIR~IQdyLv~rAre~gVPVI~n~~ldesvd~~~evi~~r~ 470 (492)
T PRK12337 418 SRPLHRYMRHFEEIRLMQDHLLRLAREEDVPVLDGETLDESADKAVEVVLRYV 470 (492)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 68601799979999999999999998749982078766779999999999999
No 133
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.50 E-value=8.6e-05 Score=49.89 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=28.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHH
Q ss_conf 719999879999989999999851-8981799860278889883346420100145542
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFK 59 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~ 59 (186)
|.++.|+||||||||||.+-+-.- .|.-..+ .++|.|..-.+.++..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-----------~i~g~~~~~l~~~~~~ 78 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-----------LINGKDLTKLSEKELA 78 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-----------EECCEECCCCCHHHHH
T ss_conf 98999989999989999999964667888469-----------9998886758988999
No 134
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.50 E-value=8.2e-05 Score=50.01 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 50 GEi~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999973499999999759
No 135
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=97.49 E-value=8.1e-05 Score=50.02 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH---HCCCEEEEEEECCCCCCCCC--CCCCCHH--HCCHHHHHHHHCC-----CEEEE
Q ss_conf 71999987999998999999985---18981799860278889883--3464201--0014554221027-----81876
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL---NSEYLVMPVGVTTRRPRVDE--KQYIDYR--FISQSQFKGWKHT-----GLFIE 69 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~---~~~~~~~~v~~TTR~~R~~E--~~g~dY~--Fvs~~~F~~~i~~-----~~FiE 69 (186)
++|-.|+||||+||||+.+.|-. ..|.+++. |+ -+|+|=| .++.-++.+.+-. +=|-
T Consensus 27 n~vTAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~----------G~v~f~G~dIy~~~~D~~~LR~~vGMVFQ~PNPFp- 95 (248)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE----------GKVLFDGQDIYDKKIDVVELRKRVGMVFQKPNPFP- 95 (248)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE----------EEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-
T ss_conf 7058987788986789999988776407881688----------88986451145656687887622585214789788-
Q ss_pred EEEECCC-EEEEECCCHHH
Q ss_conf 6661287-04544220023
Q gi|254780132|r 70 TTKVRDE-YYGYLKEDINN 87 (186)
Q Consensus 70 ~~~~~g~-~YGts~~~i~~ 87 (186)
-.+++| -||.-...|.+
T Consensus 96 -mSIydNiayG~r~~G~~~ 113 (248)
T TIGR00972 96 -MSIYDNIAYGPRLHGIKD 113 (248)
T ss_pred -CCHHHHHHHHHHHCCCCC
T ss_conf -405567545245216337
No 136
>PRK06761 hypothetical protein; Provisional
Probab=97.49 E-value=5.6e-05 Score=50.99 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=37.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCCCC-CCHHH---CCHHHHHHHHCC
Q ss_conf 9719999879999989999999851898179-9860278889883346-42010---014554221027
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVM-PVGVTTRRPRVDEKQY-IDYRF---ISQSQFKGWKHT 64 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~-~v~~TTR~~R~~E~~g-~dY~F---vs~~~F~~~i~~ 64 (186)
|+|||+|=|-+||||||.++.|.+....... +..| ++|+.|. .||.- .|+++|+++.++
T Consensus 1 m~kLIiIEGlPGsGKSTta~~l~d~L~~~g~~v~~~-----~Egd~~hP~D~~~~A~~t~~e~~~ll~~ 64 (281)
T PRK06761 1 MTKLIIIEGLPGFGKSTTAHLLNDKLSQLKIEVELF-----VEGDLNHPADYDWVACFTKFEYDRLLSN 64 (281)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-----EECCCCCCCHHHHHHCCCHHHHHHHHHH
T ss_conf 961799966899980149999999998669853899-----5078999611122210478889999885
No 137
>PRK13808 adenylate kinase; Provisional
Probab=97.48 E-value=0.00018 Score=47.90 Aligned_cols=151 Identities=20% Similarity=0.262 Sum_probs=77.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEE------------
Q ss_conf 99987999998999999985189817998602788898833464201001455422102781876666------------
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTK------------ 72 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~------------ 72 (186)
|||.||+||||.|.+..|.+++.-.+++.--.=|..-. .+.+ +. .+-...++.|+++--..
T Consensus 3 IIlLGPPGsGKGTQA~~L~~~~gi~hISTGDmLR~aI~---~~T~---LG-~kaK~im~~G~LVPDeIVi~lI~erL~~~ 75 (297)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVA---AGTP---VG-LKAKDIMASGGLVPDEVVVGIISDRIEQP 75 (297)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHH---CCCH---HH-HHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99978999985899999999869886758699999997---5998---79-99999997669888899999999996685
Q ss_pred --ECCC-EEEEECCCHHHHHHHCCCCCCCCCCCHHHH-HHHC-CCCCEEEEHCCCCCHHHHHHHHHHC------------
Q ss_conf --1287-045442200233431024200254200024-4420-5432000000232189999876201------------
Q gi|254780132|r 73 --VRDE-YYGYLKEDINNPMEHGYDILLILTHQGLAP-LKKL-YEDQVTSIFIAPPSEAELIQRRIKR------------ 135 (186)
Q Consensus 73 --~~g~-~YGts~~~i~~~~~~g~~~il~id~~G~~~-lk~~-~~~~~~~IfI~pps~~~L~~RL~~R------------ 135 (186)
-+|+ +=|-|+ ++.++-. ... |... ...+ .+|.+.++ .+.|.+|+..|
T Consensus 76 d~~~GfILDGFPR-Tv~QAEa-------------LD~~L~~~g~~LD-~VIel~Vd-d~~Lv~RI~~R~~e~~a~Ge~~R 139 (297)
T PRK13808 76 DAANGFILDGFPR-TVPQAEA-------------LDALLKDKQLKLD-AVVELRVN-EGALLARVETRVAEMRARGEEVR 139 (297)
T ss_pred CCCCCEEEECCCC-CHHHHHH-------------HHHHHHHCCCCCC-EEEEEECC-HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6678987228999-9899999-------------9999981899978-68997678-89999999988887761488788
Q ss_pred CCCCHHHHHHHHHHHHHC-------CC----E-EEEC-CCHHHHHHHHHHHHHHHH
Q ss_conf 454489999999986535-------98----8-9993-978999999999999997
Q gi|254780132|r 136 REDIPFNLDPDLFGKNHS-------YS----F-TIVN-NHLPTACRQVGLIREFVK 178 (186)
Q Consensus 136 ~~e~~~~i~~r~~~~~~~-------fD----~-iIiN-ddle~a~~~l~~Iie~l~ 178 (186)
.+|.++.+..|+..+... |. . .|.. .++++.+.+|..|+.-+.
T Consensus 140 ~DDn~E~~~kRL~~Y~~qT~Pl~~yY~e~~~L~~VDGm~~IDeVt~~I~r~l~a~~ 195 (297)
T PRK13808 140 ADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG 195 (297)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999998201259998716957862286609999999999999984
No 138
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.48 E-value=0.00015 Score=48.47 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883--3464201001455422
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKG 60 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~ 60 (186)
|..+.|+|||||||+||++.|+.-++ |..|+ .+|.+-.=.+.+.+.+
T Consensus 28 G~~vaIvG~sGsGKSTLl~ll~gl~~------------p~~G~i~i~g~~~~~~~~~~~~~ 76 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR------------PTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHC
T ss_conf 99999999999809999999966666------------79998999999933289989842
No 139
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.47 E-value=9.6e-05 Score=49.59 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 26 Ge~~~ivGpSGsGKSTLL~~i~gL 49 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999984499999999819
No 140
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=97.47 E-value=8.9e-05 Score=49.80 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEEE
Q ss_conf 719999879999989999999851-8981799
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLVMP 32 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~~~ 32 (186)
|+|+.|.|||||||+||.+.+..- .|+-..+
T Consensus 26 G~lvaLLGPSGSGKsTLLR~iAGLe~pd~G~I 57 (241)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRVIAGLEQPDSGRI 57 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 52798546898737899999835799984269
No 141
>KOG0056 consensus
Probab=97.47 E-value=0.00017 Score=48.13 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=47.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC---CCEEEEEE-EECCCE
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102---78187666-612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIETT-KVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~---~~~FiE~~-~~~g~~ 77 (186)
||.+.++||||+||+||++-|..-++--..++ ++||+|-.-|+.....+.|. ++--+--. -.+.-.
T Consensus 564 GktvAlVG~SGaGKSTimRlLfRffdv~sGsI----------~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIr 633 (790)
T KOG0056 564 GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI----------TIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIR 633 (790)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE----------EECCCHHHHHHHHHHHHHCCCCCCCCEEECCEEEEHEE
T ss_conf 96899977898866689999999940557608----------98670178887998997568356751354210000102
Q ss_pred EEEECCCHHHHH
Q ss_conf 454422002334
Q gi|254780132|r 78 YGYLKEDINNPM 89 (186)
Q Consensus 78 YGts~~~i~~~~ 89 (186)
||-+-++=+++.
T Consensus 634 yak~~Asneevy 645 (790)
T KOG0056 634 YAKPSASNEEVY 645 (790)
T ss_pred ECCCCCCHHHHH
T ss_conf 168899718999
No 142
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00022 Score=47.41 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=36.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHHHCCCEEE
Q ss_conf 719999879999989999999851-8981799860278889883--346420100145542210278187
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKHTGLFI 68 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~i~~~~Fi 68 (186)
|.++.|+||||||||||.+.+..- .|. .|+ .+|++..=.+..++..+.++=.|+
T Consensus 31 Ge~~~ivG~SGsGKSTllr~i~gL~~p~-------------sG~I~~~g~~i~~~~~~~~~~~Rr~ig~V 87 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLERPT-------------SGSVLVDGTDLTLLSGKELRKARRRIGMI 87 (233)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCC-------------CCEEEECCEECCCCCHHHHHHHHCCCCEE
T ss_conf 9999998898058999999996799999-------------80899999998979999999986258779
No 143
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.46 E-value=0.00019 Score=47.76 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=30.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHH
Q ss_conf 71999987999998999999985189817998602788898833464201001455422
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~ 60 (186)
|.++.|+||||||||||++.|+.-++-..-.|. +||.+..-++.+++.+
T Consensus 30 Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~----------i~g~~i~~~~~~~~r~ 78 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL----------IDGVDISKIGLHDLRS 78 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHH
T ss_conf 989999999999899999999679718984899----------9999966199999974
No 144
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=9.9e-05 Score=49.50 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 54 GEi~~ivG~SGsGKSTLlr~i~gL 77 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999999999984699999999759
No 145
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.45 E-value=0.00011 Score=49.27 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHH
Q ss_conf 7199998799999899999998518-9817998602788898833464201001455422
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~-~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~ 60 (186)
|.++.|+||||||||||.+.+..-. |.-.- +. .+|++..-.+..+-..
T Consensus 24 Ge~~~i~GpSGsGKSTLL~~i~gl~~p~sG~-i~----------~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 24 GKMVAIVGESGSGKSTLLNIIGLLEKPDSGQ-VY----------LNGQETPPINSKKASK 72 (206)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EE----------ECCEECCCCCHHHHHH
T ss_conf 9899998799970999999997599989759-99----------9999999899889999
No 146
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.45 E-value=0.00023 Score=47.27 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHH
Q ss_conf 719999879999989999999851898179986027888988334642010014554221
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~ 61 (186)
|..+.|+||||||||||++.|+.-.+. ...| -+||++..-++.+.+.+.
T Consensus 30 Ge~vaIvG~sGsGKSTLl~lL~gl~~~-~G~I----------~idg~~i~~~~~~~~r~~ 78 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDI----------QIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-CCEE----------EECCEECCCCCHHHHHHH
T ss_conf 999999999999799999999603578-9539----------999880673689999763
No 147
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.45 E-value=0.00011 Score=49.16 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|+.-
T Consensus 26 Ge~~~iiG~SGsGKSTll~~i~gL 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999999998199999999744
No 148
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.44 E-value=0.00021 Score=47.59 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=32.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|..+.|+|||||||+||++.|+.-++-..-.| -.||+|-.-++.+.+.+.+
T Consensus 47 Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I----------~idg~di~~~~~~~lr~~i 97 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI----------VIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE----------EECCEEHHHCCHHHHHHHE
T ss_conf 99999999999819999999960566788889----------9998996879999997505
No 149
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.43 E-value=0.00042 Score=45.74 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=58.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEE--CCCEEEEE
Q ss_conf 9999879999989999999851898179986027888988334642010014554221027818766661--28704544
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKV--RDEYYGYL 81 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~--~g~~YGts 81 (186)
||||+|.++|||+|.++.|.+....-. .+-+-|+.+.+.- .... |+.- -...=|..
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~~~-----------------~~v~vi~d~~~~~--~~~~---y~~s~~Ek~~R~~l 58 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEEKG-----------------YDVIVISDESLGI--ESDD---YKDSKKEKFLRGSL 58 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC-----------------CEEEEECCCCCCC--CCCC---CCCCHHHHHHHHHH
T ss_conf 979857999968899999999999759-----------------9389978001267--5310---00104789999999
Q ss_pred CCCHHHHHHHCCCCCCCCCCC---HHHH----HHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCC
Q ss_conf 220023343102420025420---0024----44205432000000232189999876201454
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQ---GLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRRED 138 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~---G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e 138 (186)
+++++..+..+.++|+| +.+ |.+. +-+.......+||+..| .+...++-..|++.
T Consensus 59 ~s~v~r~Ls~~~iVIlD-~~NYiKG~RYEL~C~Ak~~~t~~c~v~~~~p-~e~~~~~N~~r~~~ 120 (266)
T pfam08433 59 RSAVKRDLSKNTIVIVD-SLNYIKGFRYELYCIAKEAKTTYCVVYCKAP-LDTCLKWNEERGEP 120 (266)
T ss_pred HHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHCCCCCC
T ss_conf 99998751668889954-8740456899999999863888489996899-89999862147777
No 150
>KOG3209 consensus
Probab=97.43 E-value=4.3e-05 Score=51.68 Aligned_cols=53 Identities=30% Similarity=0.411 Sum_probs=49.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECC
Q ss_conf 1799860278889883346420100145542210278187666612870454422
Q gi|254780132|r 29 LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (186)
Q Consensus 29 ~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~ 83 (186)
..+.+++|||.++.+|++ ||-|.+...|..+-..+-|+|...|.+|||||++-
T Consensus 63 ~~~~~~~~~~~~~~~~~~--d~~fs~~~~~l~l~~~~~~l~~~~~~~~~ygtPkP 115 (984)
T KOG3209 63 YLFQVPCTTRRILEGEVP--DYSFSTVPIFLCLEVSGCLLEFGTYESNYYGTPKP 115 (984)
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCHHHHEEEECCEEECCCCCCCCCCCCCCC
T ss_conf 113466543354556667--40003520221011123451136766578899998
No 151
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00012 Score=48.99 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.++.-.
T Consensus 26 Ge~~~iiG~SGsGKSTll~~i~gL~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999972999999997599
No 152
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.42 E-value=0.00012 Score=48.96 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|-++.|+|||||||||+++-++..
T Consensus 29 Gem~fL~GHSGaGKST~lkLi~~~ 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTLLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 507998568886078999999852
No 153
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.41 E-value=0.00038 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|.++.|+||||||||||++.|..
T Consensus 26 Gei~~LvG~sGsGKSTL~~~l~G 48 (520)
T TIGR03269 26 GEVLGILGRSGAGKSVLMHVLRG 48 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999699999999965
No 154
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.41 E-value=0.00028 Score=46.80 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHH
Q ss_conf 71999987999998999999985189817998602788898833464201001455422
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~ 60 (186)
|.++.|+||||||||||++.++.-.+--.-.|. .+|.+..-.+.++...
T Consensus 36 GE~v~ivG~sGsGKSTLl~~i~Gl~~p~~G~I~----------~~G~~~~~~~~~~~~~ 84 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVS----------LVGQPLHNMDEEARAK 84 (228)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE----------ECCEECCCCCHHHHHH
T ss_conf 989999999985899999999669999967999----------9999999799889987
No 155
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.00017 Score=48.05 Aligned_cols=50 Identities=24% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEECCCCCCCCCCCCCCHH
Q ss_conf 971999987999998999999985189--81799-8602788898833464201
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSE--YLVMP-VGVTTRRPRVDEKQYIDYR 51 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~-v~~TTR~~R~~E~~g~dY~ 51 (186)
|-.||-++|.||||||||+.+|....- ++..+ +-|+-..--. +..|+|-|
T Consensus 1 m~Pii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H~f~~-D~pGkDS~ 53 (170)
T PRK10751 1 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDV-DKPGKDSY 53 (170)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCCCH
T ss_conf 987799994699999999999999999879849999457778889-99984109
No 156
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.40 E-value=0.00019 Score=47.73 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=42.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC---CCEEEEEEEECCCE-
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102---78187666612870-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIETTKVRDEY- 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~---~~~FiE~~~~~g~~- 77 (186)
|..+.|+||||||||||++-|+.-++--...| -.||+|..=++.+.+.+.+. +.-++-.+++..|.
T Consensus 491 Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i----------~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~ 560 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV----------LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560 (694)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCEE----------EECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHH
T ss_conf 97899980589878899998556758998879----------98985425499999973021357677110746999984
Q ss_pred EEE
Q ss_conf 454
Q gi|254780132|r 78 YGY 80 (186)
Q Consensus 78 YGt 80 (186)
+|-
T Consensus 561 ~~~ 563 (694)
T TIGR03375 561 LGA 563 (694)
T ss_pred CCC
T ss_conf 169
No 157
>KOG1969 consensus
Probab=97.40 E-value=0.00053 Score=45.12 Aligned_cols=126 Identities=21% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-----------------------EEEC---CCCCC--CCCCCCCCHHHC
Q ss_conf 7199998799999899999998518981799-----------------------8602---78889--883346420100
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMP-----------------------VGVT---TRRPR--VDEKQYIDYRFI 53 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~-----------------------v~~T---TR~~R--~~E~~g~dY~Fv 53 (186)
.||..|+||+|.|||||+.-...+- ++..+ -|.+ +||.= .+|+||-.--||
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~V 404 (877)
T KOG1969 326 KKILLLCGPPGLGKTTLAHVIAKQA-GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAV 404 (877)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 0068753688787247999999862-854887325554347889999999886411225688863599842468728999
Q ss_pred CHHHHHHHHCCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHH
Q ss_conf 14554221027818766661287045442200233431024200254200024442054320000002321899998762
Q gi|254780132|r 54 SQSQFKGWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRI 133 (186)
Q Consensus 54 s~~~F~~~i~~~~FiE~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~ 133 (186)
+.+..|++...=.++++-.++- |--+..=.+.+-. -+|.+++-.=+-+|+..-+. +..|+..||+..+|.+||.
T Consensus 405 --dvilslv~a~~k~~~Gkq~~~~-~~rkkkr~~~L~R--PIICICNdLYaPaLR~Lr~~-A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969 405 --DVILSLVKATNKQATGKQAKKD-KKRKKKRSKLLTR--PIICICNDLYAPALRPLRPF-AEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred --HHHHHHHHHHCCHHHCCCCCCH-HHHHHHCCCCCCC--CEEEEECCCCCHHHHHCCCC-EEEEEECCCCHHHHHHHHH
T ss_conf --9999999741614216866320-3455530465458--77898647555333310210-4899956997668999999
Q ss_pred H
Q ss_conf 0
Q gi|254780132|r 134 K 134 (186)
Q Consensus 134 ~ 134 (186)
.
T Consensus 479 ~ 479 (877)
T KOG1969 479 E 479 (877)
T ss_pred H
T ss_conf 9
No 158
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00053 Score=45.09 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=70.6
Q ss_pred CC--CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC-CCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 97--19999879999989999999851898179986027888-9883346420100145542210278187666612870
Q gi|254780132|r 1 MA--HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRP-RVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 1 m~--kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~-R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
|+ +++|++|-+|+||||+.+.+.+..-.++. +-|-+=-- ...+...+ .+++++.++.-..+-.
T Consensus 1 mk~~kvvvitGVpGvGKTTVl~~~~~~l~~~~i-vNyG~~Mle~A~k~glv----e~rD~~Rklp~e~Q~~--------- 66 (189)
T COG2019 1 MKGRKVVVITGVPGVGKTTVLKIALKELVKHKI-VNYGDLMLEIAKKKGLV----EHRDEMRKLPLENQRE--------- 66 (189)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCEE-EEHHHHHHHHHHHHCCC----CCHHHHHCCCHHHHHH---------
T ss_conf 997559999757988726699999987752200-00769999999983872----0289885298889999---------
Q ss_pred EEEECCCHHHHHHHCCCCCCCCC-----CCHHHH------HHHCCCCCEEEEHCCCCCHHHHHHHHHH----CCCCCHHH
Q ss_conf 45442200233431024200254-----200024------4420543200000023218999987620----14544899
Q gi|254780132|r 78 YGYLKEDINNPMEHGYDILLILT-----HQGLAP------LKKLYEDQVTSIFIAPPSEAELIQRRIK----RREDIPFN 142 (186)
Q Consensus 78 YGts~~~i~~~~~~g~~~il~id-----~~G~~~------lk~~~~~~~~~IfI~pps~~~L~~RL~~----R~~e~~~~ 142 (186)
.-..+...+.+.+..+|+|.+ |.|+.- +...-+ +.+++.-..| .+.+.+|+.. |-.++.++
T Consensus 67 --lq~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~p-d~ivllEaDp-~~Il~RR~~D~~r~Rd~es~e~ 142 (189)
T COG2019 67 --LQAEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEELNP-DVIVLLEADP-EEILERRLRDSRRDRDVESVEE 142 (189)
T ss_pred --HHHHHHHHHHHHHCCEEEECCCEECCCCCCCCCCCHHHHHHCCC-CEEEEEECCH-HHHHHHHHCCCCCCCCCCCHHH
T ss_conf --99999999997420658732411147876677883999975298-8799993798-9999987226120466210899
Q ss_pred HHHHH-----HHH--HHCC---CEEEECC--CHHHHHHHHHHHHH
Q ss_conf 99999-----986--5359---8899939--78999999999999
Q gi|254780132|r 143 LDPDL-----FGK--NHSY---SFTIVNN--HLPTACRQVGLIRE 175 (186)
Q Consensus 143 i~~r~-----~~~--~~~f---D~iIiNd--dle~a~~~l~~Iie 175 (186)
|..-. .++ +-.. =.+|.|. ++++|..++..+++
T Consensus 143 i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 143 IREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999999999999999997088489974788887888999999985
No 159
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00014 Score=48.56 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 26 Ge~~~ivGpSG~GKSTllr~i~Gl 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998399999999859
No 160
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.39 E-value=0.00021 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|..+.|+||||||||||++.|+.-++
T Consensus 63 Ge~vaIVG~sGSGKSTLl~lL~gl~~ 88 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999819999999957872
No 161
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00033 Score=46.34 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|+.-
T Consensus 35 Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999999799999999649
No 162
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=97.38 E-value=0.00027 Score=46.91 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=28.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CC--C-EEEE-EEECCCCC
Q ss_conf 719999879999989999999851-89--8-1799-86027888
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SE--Y-LVMP-VGVTTRRP 40 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~--~-~~~~-v~~TTR~~ 40 (186)
|..+.|+||||+||+||.+-...- .| + +..- .+|||-||
T Consensus 24 Ge~VAi~GpSGAGKSTLLnLiAGF~~PasG~i~~nd~~~t~~aP 67 (213)
T TIGR01277 24 GERVAILGPSGAGKSTLLNLIAGFLEPASGEIKVNDKDHTRLAP 67 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 77688875898627889877864047764058877801226888
No 163
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.38 E-value=0.0002 Score=47.60 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.++.-.
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999986999999997289
No 164
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00044 Score=45.61 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=33.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHHHC
Q ss_conf 7199998799999899999998518981799860278889883--3464201001455422102
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKH 63 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~i~ 63 (186)
|.++.|+||||||||||++.|+.-.+ |..|+ .+|.|-.-.+..+......
T Consensus 38 GE~l~ivGeSGsGKSTL~r~i~gl~~------------p~sG~I~~~g~~l~~~~~~~~~~~rr 89 (266)
T PRK10419 38 GETVALLGRSGCGKSTLARLLVGLES------------PSQGNISWRGEPLAKLNRAQRKAFRR 89 (266)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC------------CCCEEEEECCEECCCCCHHHHHHHHC
T ss_conf 98999999999779999999966999------------99629988999567589999999754
No 165
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00015 Score=48.38 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 26 Ge~~~iiGpSGsGKSTllr~i~Gl 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998399999999779
No 166
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.37 E-value=0.00022 Score=47.44 Aligned_cols=26 Identities=15% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|+++.|+||||||||||.+.|+...+
T Consensus 27 Ge~~~IvG~sGsGKSTLl~~l~g~~~ 52 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999809999999855565
No 167
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.37 E-value=0.00035 Score=46.20 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.+..-.
T Consensus 34 Gei~~iiGpnGsGKSTLlk~i~Gl~ 58 (269)
T PRK11831 34 GKITAIMGPSGIGKTTLLRLIGGQI 58 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999399975999999996798
No 168
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00014 Score=48.54 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518-981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~-~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|.+++|+||||||||||++.+..-. |.-..+ ..+|+|..-.+..++....
T Consensus 50 GE~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I-----------~~~G~~i~~~~~~~l~~~r 100 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-----------LIDGQDIAAMSRKELRELR 100 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-----------EECCEECCCCCHHHHHHHH
T ss_conf 99999998998489999999975999997599-----------9999999999989998852
No 169
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00015 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 28 Ge~~~iiGpSGsGKSTll~~i~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999997799999999769
No 170
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00016 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 24 Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995599999999769
No 171
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00033 Score=46.31 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i 62 (186)
|+.++|+||||+||+||.+.|+...+-..-.+ + +||++--=++.+.+.+.+
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-------~---vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-------R---VNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-------E---ECCCCCCCCCHHHHHHHE
T ss_conf 96799988999978999999847577778448-------8---899310006877888672
No 172
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.34 E-value=0.00018 Score=47.91 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 26 Ge~~~i~GpSG~GKSTlLr~iaGl 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999988099999999769
No 173
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00031 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||.+.+..-.+
T Consensus 25 GE~v~iiG~nGaGKSTLl~~i~Gll~ 50 (233)
T PRK10771 25 GEQVAILGPSGAGKSTLLNLIAGFLT 50 (233)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999819999999965999
No 174
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.34 E-value=0.00033 Score=46.32 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=49.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 719999879999989999999851--898179986027888988334642010014554221027818766661287045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN--SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~--~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
|+-+.|+||.|+|||||++-| ++ +|..+... +||+|-.-|+++...+-+.. .+.+ =|
T Consensus 361 G~TvAIVGPTGAGKTTLiNLL-QRVydP~~G~I~-----------IDG~~I~~v~r~SLR~s~AT-------VFQD--AG 419 (592)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLL-QRVYDPKVGQIL-----------IDGIDINTVTRESLRKSIAT-------VFQD--AG 419 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHH-HHHCCCCCCEEE-----------ECCEEHHHHCHHHHHHHHHH-------HHHH--CC
T ss_conf 756898778997178998877-531069865488-----------72424001034778878877-------8731--02
Q ss_pred EECCCHHHHHHHCCCC
Q ss_conf 4422002334310242
Q gi|254780132|r 80 YLKEDINNPMEHGYDI 95 (186)
Q Consensus 80 ts~~~i~~~~~~g~~~ 95 (186)
.--.+|.+.+.-|+.-
T Consensus 420 L~~R~Ir~NI~lG~~~ 435 (592)
T TIGR01192 420 LLNRSIRENIRLGREG 435 (592)
T ss_pred CCCCCHHHHHCCCCCC
T ss_conf 0013123320037777
No 175
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.33 E-value=0.00019 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7199998799999899999998
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~ 23 (186)
| +..|+|||||||+||++.++
T Consensus 23 G-itaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred C-EEEEECCCCCCHHHHHHHHH
T ss_conf 8-28999999998899999999
No 176
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00036 Score=46.15 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=37.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210278187666612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
|..+.|+||||+|||||.+-+..-..-....|..-.+|. .+-...+-|-| ++...+-|-++.+|-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-~~p~~~~~~vF----------Q~~~LlPW~Tv~~NV 93 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-TGPGPDIGYVF----------QEDALLPWLTVLDNV 93 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-CCCCCCEEEEE----------CCCCCCCHHHHHHHH
T ss_conf 979999899978899999999687877775599888215-78998779992----------667645146688443
No 177
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00018 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 25 Ge~~~iiGpSGsGKSTLlr~i~Gl 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999963599999999749
No 178
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.33 E-value=0.00018 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||.+.+..-
T Consensus 28 GE~~~llGpSGsGKSTLlr~iaGL 51 (352)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGL 51 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999984699999999769
No 179
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.00036 Score=46.15 Aligned_cols=142 Identities=13% Similarity=0.202 Sum_probs=74.2
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECCCHHH
Q ss_conf 87999998999999985189817998602788898833464201001455422102781876666128704544220023
Q gi|254780132|r 8 IGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKEDINN 87 (186)
Q Consensus 8 ~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~~i~~ 87 (186)
+|.||+||+|+...|.+... ..|. ||-|.| +++.-++|- .|.=|-=..-.+ |-..-.+....
T Consensus 1 MGVsG~GKStvg~~lA~~lg-~~fi-------------dGDdlH--p~aNi~KM~-~GiPL~DdDR~p-WL~~l~~~~~~ 62 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-AKFI-------------DGDDLH--PPANIEKMS-AGIPLNDDDRWP-WLEALGDAAAS 62 (161)
T ss_pred CCCCCCCHHHHHHHHHHHCC-CCEE-------------CCCCCC--CHHHHHHHH-CCCCCCCCHHHH-HHHHHHHHHHH
T ss_conf 98776577799999999809-8233-------------356569--988999872-799898411247-99999999998
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHCCCC-------CEEEEHCCCCCHHHHHHHHHHCCCC-CHH-HHHHHHHHHH---HCCC
Q ss_conf 34310242002542000244420543-------2000000232189999876201454-489-9999999865---3598
Q gi|254780132|r 88 PMEHGYDILLILTHQGLAPLKKLYED-------QVTSIFIAPPSEAELIQRRIKRRED-IPF-NLDPDLFGKN---HSYS 155 (186)
Q Consensus 88 ~~~~g~~~il~id~~G~~~lk~~~~~-------~~~~IfI~pps~~~L~~RL~~R~~e-~~~-~i~~r~~~~~---~~fD 155 (186)
....|++.++.+ -+||+.|.+ ++..||+.. +.+.+.+|+..|... .+. -++..+..-+ .+-|
T Consensus 63 ~~~~~~~~vi~C-----SALKr~YRD~LR~~~~~~~Fv~L~g-~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de~ 136 (161)
T COG3265 63 LAQKNKHVVIAC-----SALKRSYRDLLREANPGLRFVYLDG-DFDLILERMKARKGHFMPASLLDSQFATLEEPGADED 136 (161)
T ss_pred HHCCCCCEEEEC-----HHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 642798169962-----7887889999854599738999638-8999999987605677888999989998358999988
Q ss_pred EEEEC--CCHHHHHHHHHHH
Q ss_conf 89993--9789999999999
Q gi|254780132|r 156 FTIVN--NHLPTACRQVGLI 173 (186)
Q Consensus 156 ~iIiN--ddle~a~~~l~~I 173 (186)
.+.+. ..+++.+++....
T Consensus 137 vi~idi~~~~e~vv~~~~~~ 156 (161)
T COG3265 137 VLTIDIDQPPEEVVAQALAW 156 (161)
T ss_pred EEEEECCCCHHHHHHHHHHH
T ss_conf 79864899989999999999
No 180
>PRK13976 thymidylate kinase; Provisional
Probab=97.33 E-value=0.00031 Score=46.50 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCE-EEEEEECCCCCCCCC
Q ss_conf 99998799999899999998518981-799860278889883
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYL-VMPVGVTTRRPRVDE 44 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~-~~~v~~TTR~~R~~E 44 (186)
+|++=|.-||||+|.++.|.+..... .......||+|....
T Consensus 2 fIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~trEPggt~ 43 (202)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVLTREPGGTS 43 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 899989999989999999999998606998689837999982
No 181
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.32 E-value=0.0002 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7199998799999899999998
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~ 23 (186)
|+++.|+||||||||||++.++
T Consensus 21 G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999998799986999999998
No 182
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00034 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|..+.|+||||||||||++.|+.-.
T Consensus 28 Ge~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999983999999997677
No 183
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0002 Score=47.63 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|..++|+||||+||||+.+-+..
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 97999989998888999999968
No 184
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.30 E-value=0.00031 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|..+.|+||||||||||++.|+.-.+
T Consensus 27 Ge~v~i~G~sGsGKSTLl~~l~Gl~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999995899988999999869876
No 185
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.30 E-value=0.00022 Score=47.39 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|+...
T Consensus 33 Ge~~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8099999899960999999996789
No 186
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.30 E-value=0.00019 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=11.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 19999879999989999999851
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+++.++||+||||||.+.+|..+
T Consensus 195 ~vi~lvGPTGVGKTTTiAKLAa~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 27999778887578899999999
No 187
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.0002 Score=47.61 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+|||||||||+++.+..-
T Consensus 27 Ge~~~ilGpSG~GKSTllr~i~gl 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995699999999759
No 188
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.29 E-value=0.00017 Score=48.05 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+|.-|++||||+||+||++.|+..
T Consensus 164 ~k~sv~~G~SGVGKSSLiN~L~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALVPE 187 (298)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 986999878988788888760714
No 189
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00037 Score=46.08 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 7199998799999899999998518981799860278
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTR 38 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR 38 (186)
|.++.|+||||||||||.+.++.-.+--.-.|+.--+
T Consensus 27 Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~~G~I~~~G~ 63 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVPPQHGSITLDGK 63 (255)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 9899999999846999999997599889971857996
No 190
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00021 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||.+.+..-
T Consensus 23 ge~~~iiGpSGsGKSTll~~i~GL 46 (214)
T cd03297 23 EEVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 979999999973599999999849
No 191
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=97.28 E-value=0.00042 Score=45.70 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECC
Q ss_conf 71999987999998999999985189-8179986027
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTT 37 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TT 37 (186)
|.++.|+||||||||||++.++.-.+ .-. .|.+--
T Consensus 32 GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G-~I~~~g 67 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSARLAPDAG-EVHYRM 67 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECC
T ss_conf 979999888998899999998567888887-399746
No 192
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00021 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.+..-.
T Consensus 30 Ge~~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999957999999997599
No 193
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.28 E-value=0.00016 Score=48.28 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=56.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 19999879999989999999851898179986027888988334642010014554221027818766661287045442
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
+.|++.|++|||||++++.+...+..-.+++ +|+=+|. --...|..+...+..--....+..---...
T Consensus 13 kai~laG~pGAGKS~~~~~~~~~~~~~~~v~-----------In~D~~r-~~~P~y~~l~~~~~~~~~~~~~~~a~~~~~ 80 (191)
T pfam06414 13 VAVLLGGQPGAGKTELARALLEELGGGNVVR-----------IDPDELR-TYHPDYDELQKADPKDASELTQPDASRWVE 80 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCEE-----------ECCHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 7999957998888999999987537899389-----------7135878-877747865540767789998999999999
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHH-------HHHHCCCCCEEEEHCCCCCHHHHHHHHHHC
Q ss_conf 20023343102420025420002-------444205432000000232189999876201
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLA-------PLKKLYEDQVTSIFIAPPSEAELIQRRIKR 135 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~-------~lk~~~~~~~~~IfI~pps~~~L~~RL~~R 135 (186)
..++.+++.+.++|+|-...... .+++ -+..+..+||..| .+.=..|...|
T Consensus 81 ~~~~~a~~~r~n~iiegT~~~~~~~~~~~~~lk~-~GY~v~v~~Va~~-~e~S~~r~~~R 138 (191)
T pfam06414 81 KLIDYAIERGYNIILEGTLRSPDVARKLARKLKA-AGYEVEVYVVAVP-PELSWLGVLDR 138 (191)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH-CCCEEEEEEEECC-HHHHHHHHHHH
T ss_conf 9999999759998985777897999999999997-8997999999889-99999999999
No 194
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.28 E-value=0.00029 Score=46.72 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-------EEECC-CCCCCCCCCCCCHHHCCHHHHHHHHCCCE
Q ss_conf 97199998799999899999998518981799-------86027-88898833464201001455422102781
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMP-------VGVTT-RRPRVDEKQYIDYRFISQSQFKGWKHTGL 66 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~-------v~~TT-R~~R~~E~~g~dY~Fvs~~~F~~~i~~~~ 66 (186)
|.-+|.|=|||||||+|+++.|.++.....+. +.|.- |.. .++.| +.+++.+-+++..-.
T Consensus 1 ~~~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL----~~~~d--~~~E~~L~~L~~~~d 68 (223)
T TIGR00017 1 MKMIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSL----QNRVD--LTDEDALLELISQLD 68 (223)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHH----HCCCC--CCCHHHHHHHHHHCC
T ss_conf 986376237764655789999998629502144328999999999887----40688--568488999986326
No 195
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.27 E-value=0.00024 Score=47.18 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|..-
T Consensus 27 Ge~~aliG~sGsGKSTLl~~l~gl 50 (248)
T PRK11264 27 GEVVAIIGPSGSGKTTLLRCINLL 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999998099999999758
No 196
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.27 E-value=0.00025 Score=47.07 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|+.-.
T Consensus 26 Gei~~iiG~nGaGKSTLl~~i~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998899998999999995685
No 197
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.27 E-value=0.00023 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|.++.|+||||||||||++.++.
T Consensus 32 Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 32 GEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 98999999999999999999727
No 198
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.27 E-value=0.00024 Score=47.15 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=55.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEE-EEEEEECCCEEEEEC
Q ss_conf 999879999989999999851898179986-027888988334642010014554221027818-766661287045442
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVG-VTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLK 82 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~-~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~F-iE~~~~~g~~YGts~ 82 (186)
|.|+||.|||||=|++.|.... +..|+++ .|| --=+|=+ |+| | +.-..++++.-.+ ++-++ .|--| .
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L-~VPfAiADATt-LTEAGYV-GED---V-ENIL~~Llq~ad~DV~kA~-kGIiY---I 223 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARIL-NVPFAIADATT-LTEAGYV-GED---V-ENILLKLLQAADYDVEKAQ-KGIIY---I 223 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHH-HHCCCCC-CCC---H-HHHHHHHHHHCCCCHHHHC-CCEEE---E
T ss_conf 2454688852689999999873-88742111110-2006642-422---8-8999999874145524527-85089---8
Q ss_pred CCHHHHHHH--CCCCCCCCCCCHHHH
Q ss_conf 200233431--024200254200024
Q gi|254780132|r 83 EDINNPMEH--GYDILLILTHQGLAP 106 (186)
Q Consensus 83 ~~i~~~~~~--g~~~il~id~~G~~~ 106 (186)
++|+++.++ +.++-=||.=+|++|
T Consensus 224 DEIDKIaRkSEN~SITRDVSGEGVQQ 249 (452)
T TIGR00382 224 DEIDKIARKSENPSITRDVSGEGVQQ 249 (452)
T ss_pred ECCCCHHHHCCCCEEEEEECCCHHHH
T ss_conf 42231012157780112217554999
No 199
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00041 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.+..-
T Consensus 35 GE~v~iiG~sGsGKSTLl~~i~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999994099999999669
No 200
>KOG0058 consensus
Probab=97.26 E-value=0.00031 Score=46.55 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=41.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC---CCEEEEEEEECCC-
Q ss_conf 71999987999998999999985189-817998602788898833464201001455422102---7818766661287-
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIETTKVRDE- 76 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~---~~~FiE~~~~~g~- 76 (186)
|++..|+||||+||+|++.-|..-|+ .-.. |. .||+|--=++.....+.|. +.--+-.+.+..|
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~-Il----------lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI 562 (716)
T KOG0058 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGR-IL----------LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENI 562 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCE-EE----------ECCEEHHHCCHHHHHHHEEEEECCCEEECCCHHHHH
T ss_conf 9779998899988899999999736888873-87----------788345641879998771431026555045178777
Q ss_pred EEEEECCCHHHHH
Q ss_conf 0454422002334
Q gi|254780132|r 77 YYGYLKEDINNPM 89 (186)
Q Consensus 77 ~YGts~~~i~~~~ 89 (186)
.||....+-+++.
T Consensus 563 ~YG~~~~t~e~i~ 575 (716)
T KOG0058 563 AYGLDNATDEEIE 575 (716)
T ss_pred HCCCCCCCHHHHH
T ss_conf 5278888899999
No 201
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=97.25 E-value=0.0016 Score=42.23 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=94.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 19999879999989999999851898179986027888988334-64201001455422102781876666128704544
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ-YIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~-g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
+||.|+|=+||||-|=+.++.++|...+.+ |=--==+|+- |-+ -=.+.+.-.++|.++-...+-.- .
T Consensus 4 kIiFivGGPGSGKGTQC~KiV~KYGfTHLS----sGdLLR~Ev~SgS~----rg~~L~aiMe~G~LVp~~~VL~L----l 71 (191)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS----SGDLLREEVASGSE----RGKQLQAIMESGELVPLDVVLDL----L 71 (191)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCCCC----HHHHHHHHHCCCCC----HHHHHHHHHHCCCCCCCHHHHHH----H
T ss_conf 568886588888401368988641886454----06788987415781----14789999861885550668999----9
Q ss_pred CCCHHHHHHH-CCCCCCCCCCCHHH-HHH------HCCCCCEEEEHCCCCCHHHHHHHHHHCC--------CCCHHHHHH
Q ss_conf 2200233431-02420025420002-444------2054320000002321899998762014--------544899999
Q gi|254780132|r 82 KEDINNPMEH-GYDILLILTHQGLA-PLK------KLYEDQVTSIFIAPPSEAELIQRRIKRR--------EDIPFNLDP 145 (186)
Q Consensus 82 ~~~i~~~~~~-g~~~il~id~~G~~-~lk------~~~~~~~~~IfI~pps~~~L~~RL~~R~--------~e~~~~i~~ 145 (186)
++++-..+.. .|=-|+| |+. +.+ +...+.-+++|+.. |.++|.+||..|+ +|+++-|.+
T Consensus 72 ~dAm~~~~~~GskGFLID----GYPRev~QG~eFe~~I~~a~L~Ly~d~-s~dTmv~RLL~Ra~~S~vkR~DDn~~TI~k 146 (191)
T TIGR01360 72 KDAMLAALGKGSKGFLID----GYPREVKQGEEFEKRIAPAKLVLYFDC-SEDTMVKRLLKRAETSGVKRVDDNEKTIKK 146 (191)
T ss_pred HHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 999998624898631126----873320112456751599634643000-444799999998762479988988789999
Q ss_pred HHHHHHH-------CCC----EEEECC--CHHHHHHHHHHHH
Q ss_conf 9998653-------598----899939--7899999999999
Q gi|254780132|r 146 DLFGKNH-------SYS----FTIVNN--HLPTACRQVGLIR 174 (186)
Q Consensus 146 r~~~~~~-------~fD----~iIiNd--dle~a~~~l~~Ii 174 (186)
||..+.. .|. .+=+|- ++++.+.+|-.-+
T Consensus 147 RL~ty~~~t~pvi~yYe~kg~~~~iNAEG~vddvF~~vv~~l 188 (191)
T TIGR01360 147 RLETYYKATEPVIAYYESKGKLLKINAEGTVDDVFLQVVAAL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 999988502889986178871577427787758999999974
No 202
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00027 Score=46.89 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||++.|+.-.+
T Consensus 33 GE~vaivG~nGsGKSTL~k~l~Gl~~ 58 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999659999999972888
No 203
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00028 Score=46.75 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||++.|+...+
T Consensus 33 Gei~~llG~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 84999998999988999999837878
No 204
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.25 E-value=0.00027 Score=46.83 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|+..
T Consensus 27 Gei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 979999999999999999998377
No 205
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.24 E-value=0.0002 Score=47.66 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 99998799999899999998518981799860278889883
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE 44 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E 44 (186)
.++|+|++.|||+||.++|+...-...-..+.|||.+-.+-
T Consensus 5 ~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~ 45 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI 45 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEE
T ss_conf 89999999999999999995897033238898263442368
No 206
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.24 E-value=0.00025 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|+...
T Consensus 25 GEiv~liGpNGaGKSTLlk~l~Gll 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999799976999999997787
No 207
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.24 E-value=0.00047 Score=45.43 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.|+.-.+
T Consensus 37 Ge~~~l~GpNGaGKTTLlr~l~Gl~~ 62 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98999999999879999999976977
No 208
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=97.24 E-value=0.00025 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=12.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHH
Q ss_conf 9719999879999989999999
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQV 22 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L 22 (186)
+|.+.+|.|+|||||+||++..
T Consensus 664 LG~~t~iTGVSGSGKSTLind~ 685 (956)
T TIGR00630 664 LGLFTCITGVSGSGKSTLINDT 685 (956)
T ss_pred CCEEEEEECCCCCCHHHHHHHH
T ss_conf 7717999744587457779999
No 209
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.24 E-value=0.00046 Score=45.45 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||.+.|+.-.+
T Consensus 26 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 51 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 95999999999999999999966778
No 210
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.24 E-value=0.00026 Score=46.93 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.++...
T Consensus 31 Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9899999999985899999981895
No 211
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0013 Score=42.81 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
..+|||.||=|+|||||++.|.++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 60899844644687899999998838
No 212
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.23 E-value=0.00017 Score=48.08 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=30.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999879999989999999851898179986027888988334
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~ 46 (186)
++|+|++.|||+||.++|+.+...+.-..+.|||.+-.+..+
T Consensus 4 ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~ 45 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID 45 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEE
T ss_conf 999889999899999999689733432889847863267895
No 213
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00026 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||++.|..-
T Consensus 29 Ge~~~llGpsG~GKSTllr~i~Gl 52 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999973699999999779
No 214
>COG4639 Predicted kinase [General function prediction only]
Probab=97.22 E-value=0.00047 Score=45.42 Aligned_cols=119 Identities=24% Similarity=0.319 Sum_probs=58.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC---CCCCC-CCCHHHCCHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 97199998799999899999998518981799860278889---88334-642010014554221027818766661287
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPR---VDEKQ-YIDYRFISQSQFKGWKHTGLFIETTKVRDE 76 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R---~~E~~-g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~ 76 (186)
|-.+++++|+|||||+|.++....+.+.+. . --+|.-+ .++.+ +.. +++.++
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~~~~ls--l-d~~r~~lg~~~~~e~sqk~----~~~~~~----------------- 56 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQNYVLS--L-DDLRLLLGVSASKENSQKN----DELVWD----------------- 56 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCEEC--H-HHHHHHHHHCHHHHHCCCC----HHHHHH-----------------
T ss_conf 944899866887764289997179953414--9-9999886202046650133----799999-----------------
Q ss_pred EEEEECCCHHHHHHHCCCCCCCCCC---C---HHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 0454422002334310242002542---0---002444205432000000232189999876201454489999999
Q gi|254780132|r 77 YYGYLKEDINNPMEHGYDILLILTH---Q---GLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDL 147 (186)
Q Consensus 77 ~YGts~~~i~~~~~~g~~~il~id~---~---G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~ 147 (186)
......+..+..|+..|+|-+- + -...|-+.|+..++.|.+..| ...+.+|-..|.+.....+-.+.
T Consensus 57 ---~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp-~~~c~aRNk~~~Rqv~~~VI~r~ 129 (168)
T COG4639 57 ---ILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTP-LELCLARNKLRERQVPEEVIPRM 129 (168)
T ss_pred ---HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEECC-HHHHHHHHHCCCHHCCHHHHHHH
T ss_conf ---99999999997397689975458999999999999983976899998188-99998774044001798999999
No 215
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.22 E-value=0.00047 Score=45.44 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.+..-.
T Consensus 30 Ge~~~iiG~sGsGKTTll~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999986999999996699
No 216
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.22 E-value=0.00026 Score=46.98 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999879999989999999851898179
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVM 31 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~ 31 (186)
-|+++||+|||||.|++.|.+.. ++.+
T Consensus 529 SFLF~GPTGVGKTElak~LA~~L-Gv~l 555 (774)
T TIGR02639 529 SFLFVGPTGVGKTELAKQLAEEL-GVHL 555 (774)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCHH
T ss_conf 88864798962578899999970-8200
No 217
>PRK13542 consensus
Probab=97.22 E-value=0.00056 Score=44.95 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 9719999879999989999999851898179986027888988
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD 43 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~ 43 (186)
.|.++.|+||+|+|||||.+.|+.-.+--.-.|.+-.++.+.+
T Consensus 43 ~Gei~~liGpNGaGKTTLlk~l~Gll~p~~G~I~~~G~~i~~~ 85 (224)
T PRK13542 43 PGDLLQVMGPNGSGKTSLLRVLSGLMPPAEGDLYWRGRAVRAG 85 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCC
T ss_conf 9979999999999999999999579788852899999999879
No 218
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.00049 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++-++.-.
T Consensus 27 G~i~~l~G~NGaGKSTLlkli~Gl~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799998899987999999997785
No 219
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.21 E-value=0.00033 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|..+.|+||||||||||++.|+..+
T Consensus 28 Ge~~aivG~sGsGKSTLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 9999999999875999999998617
No 220
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=97.21 E-value=0.0002 Score=47.71 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+|.-|++||||+||+||++.|+..
T Consensus 207 ~ktsvf~GqSGVGKSSLiN~L~p~ 230 (344)
T PRK12288 207 GRISIFVGQSGVGKSSLINALLPE 230 (344)
T ss_pred CCEEEEEECCCCCHHHHHHHCCCH
T ss_conf 785999806876788887610753
No 221
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00025 Score=47.11 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||+||||+.+.+..-
T Consensus 32 Ge~~~llGpSG~GKTTlLr~iaGl 55 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999964999999999769
No 222
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.21 E-value=0.00038 Score=45.97 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=34.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEECCCCCCCCCCCCCCHH
Q ss_conf 971999987999998999999985189--81799-8602788898833464201
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSE--YLVMP-VGVTTRRPRVDEKQYIDYR 51 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~-v~~TTR~~R~~E~~g~dY~ 51 (186)
|-+||-++|+|+||||||+.+|....- ++..+ |-|+-..++.+ ..|+|-|
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D-~~GkDs~ 53 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLD-KPGKDTY 53 (161)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-CCCCCCC
T ss_conf 9728999962799734289999999975793799998658777778-8987661
No 223
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00026 Score=46.96 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 20 Ge~vaiiG~sGsGKSTLl~~l~GLl 44 (276)
T PRK13634 20 GSYVAIIGHTGSGKSTLLQHLNGLL 44 (276)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999969999999997499
No 224
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00087 Score=43.80 Aligned_cols=55 Identities=31% Similarity=0.393 Sum_probs=33.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHHHCCCEEE
Q ss_conf 7199998799999899999998518981799860278889883--346420100145542210278187
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKHTGLFI 68 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~i~~~~Fi 68 (186)
|.++.|+||||||||||++.+..-. +|-.|+ .+|+|-.-.+..+...+.+.=.|+
T Consensus 31 Gei~giIG~SGaGKSTLlr~i~gL~------------~ptsG~I~~~G~dl~~l~~~~l~~~Rr~Ig~i 87 (343)
T PRK11153 31 GQIYGVIGASGAGKSTLIRCVNLLE------------RPTSGSVIVDGQDLTTLSESELTKARRQIGMI 87 (343)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHHHHCCEEEE
T ss_conf 9899999999986999999996599------------99963999999999879988999986386999
No 225
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00029 Score=46.70 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||++.+..-
T Consensus 30 Ge~~~llGpsG~GKTTllr~iaGl 53 (358)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGL 53 (358)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999863699999999769
No 226
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.20 E-value=0.00051 Score=45.19 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||++.++.-.+
T Consensus 25 Ge~~~liG~nGsGKTTLl~~i~G~~~ 50 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999998999889999999957989
No 227
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.19 E-value=0.00043 Score=45.67 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+||||||+++.++.-.+
T Consensus 25 Ge~~~liGpNGaGKSTllk~i~Gl~~ 50 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98999999999869999999976878
No 228
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.19 E-value=0.00033 Score=46.32 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||.+.++...|
T Consensus 27 Ge~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 27 GRVTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999769999999956788
No 229
>KOG0061 consensus
Probab=97.19 E-value=0.00037 Score=46.05 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC---EEEEEEECCCCCCCC
Q ss_conf 719999879999989999999851898---179986027888988
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY---LVMPVGVTTRRPRVD 43 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~---~~~~v~~TTR~~R~~ 43 (186)
|+|..|+|||||||+||.+.|..+.+. ..-.|..--|++...
T Consensus 56 Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061 56 GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHH
T ss_conf 868999768887799999999577887887615999898227645
No 230
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.18 E-value=0.00032 Score=46.44 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||.+.+..-
T Consensus 43 GE~~~llGpSGsGKSTLlr~iaGl 66 (378)
T PRK09452 43 GEFLTLLGPSGCGKTTVLRLIAGF 66 (378)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989997699999999769
No 231
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.18 E-value=0.00032 Score=46.45 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||||||||.+.+..-
T Consensus 31 GE~~~llGpSG~GKTTlLr~iaGL 54 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999974599999999777
No 232
>PRK10744 phosphate transporter subunit; Provisional
Probab=97.18 E-value=0.00035 Score=46.16 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|..-
T Consensus 36 Ge~~~liG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 36 NQVTAFIGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999999998199999999876
No 233
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00035 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|.++.|+||||||||||++.|..
T Consensus 28 Ge~~~iiG~nGaGKSTLl~~l~g 50 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999999999719999999965
No 234
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.17 E-value=0.00038 Score=45.96 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.+..-.
T Consensus 27 Ge~~~liG~nGsGKSTll~~i~Gl~ 51 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999980999999996389
No 235
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.17 E-value=0.00035 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.++.-
T Consensus 31 Gei~~iiG~sGsGKSTLl~~i~gl 54 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 979999989998199999999659
No 236
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.17 E-value=0.00068 Score=44.43 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCC
Q ss_conf 71999987999998999999985189-81799860278889883346420100145542210---27818766661287
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDE 76 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~ 76 (186)
|+.+.|+|+|||||+||+|-|+.-+. .-+. | ..||.|-.=++...+.+.+ .++.|+-++.+..|
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~-I----------~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eN 566 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR-I----------LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-E----------EECCEEHHHCCHHHHHHHEEEECCCCHHHCCCHHHH
T ss_conf 9889998799998899999983678888855-9----------999872786699999865468746653204739879
No 237
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.17 E-value=0.00036 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||+|||||||++.+..-
T Consensus 30 GE~~~iiGpNGaGKSTLlk~i~Gl 53 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989996099999999756
No 238
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.17 E-value=0.00036 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|...
T Consensus 26 GEi~gLiGpNGaGKSTLlk~i~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 809999899997099999999679
No 239
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00032 Score=46.41 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCC
Q ss_conf 719999879999989999999851-898
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEY 28 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~ 28 (186)
|.++.|+||||||||||++.++.- .|.
T Consensus 38 GEiv~LiG~nGaGKSTLlr~i~Gl~~p~ 65 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPT 65 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 9899999899888999999996589888
No 240
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.16 E-value=0.00088 Score=43.78 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 999987999998999999985189
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
||+|-|+=|||||||++.|.+...
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 989967856799999999999859
No 241
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00048 Score=45.35 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|..+.|+||||||||||++.|..-.+
T Consensus 33 Ge~~aiiG~sGsGKSTL~~~l~Gl~~ 58 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999689999999963899
No 242
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00038 Score=45.96 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|+.-.
T Consensus 52 Ge~vaIIG~nGsGKSTL~~~l~Gll 76 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999499984999999997588
No 243
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=97.16 E-value=0.00037 Score=46.01 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=34.4
Q ss_pred EEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCCCEEEECC-CHH
Q ss_conf 00000232189999876201454489999999986------53598899939-789
Q gi|254780132|r 116 TSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK------NHSYSFTIVNN-HLP 164 (186)
Q Consensus 116 ~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~------~~~fD~iIiNd-dle 164 (186)
.+|+|.+| .+.-.+|+.+|+.-+++.+.+++... ....|++|.|+ +++
T Consensus 124 ~ii~V~a~-~~~r~~Rl~~R~~~s~~~~~~~~~~Q~~~~~k~~~aD~vI~Nngsi~ 178 (179)
T pfam01121 124 RVLVVDAP-VELQVERLMQRDGLSREQVQAIIAAQASREERLALADDVLDNDSGLA 178 (179)
T ss_pred EEEEEECC-HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCEEEECCCCCC
T ss_conf 59999879-99999999980599999999999968998999986999998989889
No 244
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.15 E-value=0.00039 Score=45.90 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEE---EE-EEECCCCC
Q ss_conf 719999879999989999999851-89817---99-86027888
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLV---MP-VGVTTRRP 40 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~---~~-v~~TTR~~ 40 (186)
|.++.|.|||||||||+.+.+..- .|.-. +- ...|.-||
T Consensus 31 Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~lpp 74 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
T ss_conf 86899989988888999999967778888659999999888994
No 245
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00057 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|+...
T Consensus 28 Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (257)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGEL 52 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999999987999999985675
No 246
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.15 E-value=0.00073 Score=44.27 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=28.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEE----EEEECCCCCCC
Q ss_conf 719999879999989999999851-898179----98602788898
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLVM----PVGVTTRRPRV 42 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~~----~v~~TTR~~R~ 42 (186)
|.+..|+|||||||+||.+-...- .|...- -+.||..||-.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE 70 (231)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCCCC
T ss_conf 8579997788865788999987424778745898572147689544
No 247
>PRK13544 consensus
Probab=97.15 E-value=0.00057 Score=44.89 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||.+.|+.-.+
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~Gl~~ 52 (208)
T PRK13544 27 NSLTLVIGNNGSGKTSLLRLLAGLIP 52 (208)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 94999999999989999999958806
No 248
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.15 E-value=0.00052 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998799999899999998518
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+|+|-|+-||||||+++.|.+..
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98998888888999999999966
No 249
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00059 Score=44.80 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|..-.
T Consensus 37 Ge~~~liG~NGaGKSTLl~~l~gl~ 61 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999980999999995688
No 250
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.14 E-value=0.00038 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|.++.|+||||||||||++.|+.
T Consensus 35 Gei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 81999998999519999999857
No 251
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.14 E-value=0.00038 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||+|||||||.+.++..
T Consensus 26 Gei~~iiGpnGaGKSTLl~~i~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 989999968999999999997077
No 252
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.00034 Score=46.26 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
++++.++||+||||||.+.+|..++
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~ 234 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARY 234 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7369998888875676999999999
No 253
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.14 E-value=0.00037 Score=46.03 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9998799999899999998518981799
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMP 32 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~ 32 (186)
+||.||+||||.|.++.|++++.-.+.|
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~HIS 29 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPHIS 29 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 4675598987667999999860885020
No 254
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=97.14 E-value=0.00011 Score=49.24 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=57.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 999987999998999999985189817998602788898--833464201001455422102781876666128704544
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRV--DEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~--~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
=|.|+|-+.+||+||++.|+.+.--+.-.++-|||-+=. -+.+|..|.||+-.-+.+..+-..-+| +|.+.
T Consensus 213 rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~iE-------~~s~~ 285 (474)
T PRK03003 213 RVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHE-------FYASL 285 (474)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHH-------HHHHH
T ss_conf 79998089987889999985897567458998515440589999998999998987663553343145-------89999
Q ss_pred CCCHHHHHHHCCCCCCCCCCC
Q ss_conf 220023343102420025420
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQ 102 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~ 102 (186)
+ + .++++...+|+|.+|..
T Consensus 286 r-t-l~aI~~advvilviDa~ 304 (474)
T PRK03003 286 R-T-HAAIDAAEVAVVLIDAS 304 (474)
T ss_pred H-H-HHHHHHCCEEEEEEECC
T ss_conf 9-9-99987335579998546
No 255
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.14 E-value=0.00083 Score=43.91 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=36.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC
Q ss_conf 71999987999998999999985189-817998602788898833464201001455422102
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~ 63 (186)
|.-|.|.||||+||+|+.+.++.-.+ ...... -.|++|--.+.++|.+.+.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~-----------f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPTSGTLL-----------FEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE-----------ECCCCCCCCCHHHHHHHHH
T ss_conf 854887678876688999999813699885288-----------7473344348599999999
No 256
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.13 E-value=0.00079 Score=44.03 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.|+...+
T Consensus 28 GEi~gLIGPNGAGKSTLLk~I~Gll~ 53 (409)
T PRK09536 28 GHLVGVVGPNGAGKTTLLRAMNGLIT 53 (409)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999987279999999966888
No 257
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00059 Score=44.81 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 33 Ge~~aiiG~nGsGKSTLl~~l~GLl 57 (286)
T PRK13646 33 GKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999981999999997078
No 258
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.12 E-value=0.0004 Score=45.87 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.+++|+||||+|||||.+.+..-
T Consensus 30 Ge~~~llGpSG~GKtTlLr~iaGl 53 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999999999953599999999769
No 259
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.00042 Score=45.68 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.+..-
T Consensus 37 GE~v~iiG~nGsGKSTL~r~l~gl 60 (281)
T PRK13633 37 GEFLVILGHNGSGKSTIAKHMNAL 60 (281)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998499999999758
No 260
>PRK10908 cell division protein FtsE; Provisional
Probab=97.11 E-value=0.00065 Score=44.55 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.++.-
T Consensus 28 Ge~~~liG~nGsGKSTLl~~i~Gl 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999980799999999659
No 261
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.00037 Score=46.07 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 33 GE~v~iiG~nGsGKSTLl~~l~GLl 57 (287)
T PRK13637 33 GEFVALIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999939999999997399
No 262
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.11 E-value=0.00085 Score=43.85 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=31.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHH
Q ss_conf 71999987999998999999985189-8179986027888988334642010014554
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F 58 (186)
|.++.|+||+||||+||++.++.-.+ .-. .+ ..+|.+..+.+..+.
T Consensus 26 Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G-~i----------~i~G~~i~~~~~~~~ 72 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSG-EI----------LVDGKEVSFASPRDA 72 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EE----------EECCEECCCCCHHHH
T ss_conf 989999988998999999999577689857-89----------999999999999999
No 263
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00046 Score=45.47 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||+|||||||++.|+..
T Consensus 33 Ge~~~llGpnGaGKSTLl~~l~g~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 839999999999889999998379
No 264
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.10 E-value=0.00048 Score=45.34 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||+|+|||||++.++.-
T Consensus 27 Gei~~iiG~nGaGKSTLlk~i~Gl 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 979999889999899999999646
No 265
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.10 E-value=0.00074 Score=44.20 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHCC
Q ss_conf 971999-987999998999999985189
Q gi|254780132|r 1 MAHIFV-LIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 1 m~kiiv-i~GpsGsGK~tl~~~L~~~~~ 27 (186)
||.+|| |=|||||||+|+++.|.++..
T Consensus 32 ~~~iIIAIDGPAGSGKSTVAk~lA~~LG 59 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLG 59 (863)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7988999868986788999999999829
No 266
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.10 E-value=0.00077 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|+.-.
T Consensus 27 Ge~~~l~G~NGaGKSTLl~~l~Gl~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999999985999999997688
No 267
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00054 Score=45.05 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 719999879999989999999851898
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY 28 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~ 28 (186)
|.++.|+||||||||||++.++.....
T Consensus 21 Ge~~~iiG~nGsGKSTLl~~~~~~~~~ 47 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGK 47 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 989999999999899999988876103
No 268
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.00045 Score=45.54 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+|||||||||+++.++.-.+
T Consensus 29 Ge~~aiiG~SGsGKStl~k~llgll~ 54 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999998789999999957998
No 269
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.08 E-value=0.00051 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+.|.+|+||+|||||||++.+...
T Consensus 22 ~~itaivG~NGaGKSTLl~~i~~~ 45 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 888999989999999999998630
No 270
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00064 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 36 Ge~vaivG~nGsGKSTLlk~l~Gll 60 (273)
T PRK13632 36 GEYVAILGHNGSGKSTISKILTGLL 60 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999986999999997387
No 271
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00046 Score=45.46 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|..+.|+||||||||||++.|..-
T Consensus 34 Ge~vaiiG~nGsGKSTL~~~l~Gl 57 (283)
T PRK13640 34 GSWTALIGHNGSGKSTISKLINGL 57 (283)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999999999998799999999640
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.0011 Score=43.25 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||++.|+.-.|
T Consensus 31 GEi~~liG~nGaGKSTL~~~l~G~~~ 56 (510)
T PRK09700 31 GEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 96999989999729999999837998
No 273
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=97.06 E-value=0.00045 Score=45.52 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=33.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHHHC
Q ss_conf 7199998799999899999998518981799860278889883--3464201001455422102
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKH 63 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~i~ 63 (186)
|+=+.|+||||+|||||..-|.--. +|+.|+ .||++-.=+++++-.+.+.
T Consensus 387 G~r~Ai~G~SG~GKsTLL~~L~G~l------------~P~~G~vtl~G~~~~~~~~~evrr~v~ 438 (566)
T TIGR02868 387 GERVAILGPSGSGKSTLLATLAGLL------------DPLQGEVTLDGVPVSSLSEDEVRRRVS 438 (566)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC------------CCCCCCEEECCCCHHHCCCCHHEHHEE
T ss_conf 8608986688765789999998402------------899991787773243257311000003
No 274
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0011 Score=43.12 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHH
Q ss_conf 7199998799999899999998518981799860278889883--34642010014554221
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGW 61 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~ 61 (186)
|.++.|+|+||||||||++.|..-.+ |-.|+ .+|+|-.-.+..+....
T Consensus 41 GE~lgiVGeSGsGKSTL~~~l~gl~~------------p~~G~I~~~G~dl~~~~~~~~~~~ 90 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLTMIET------------PTGGELYYQGQDLLKADPEAQKLL 90 (327)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHH
T ss_conf 99999999983199999999956999------------886379989995577999999997
No 275
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00081 Score=43.98 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|+.-.
T Consensus 28 Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999999981999999997598
No 276
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00049 Score=45.33 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.++.-.
T Consensus 30 Ge~~aliG~NGaGKSTLl~~i~Gll 54 (277)
T PRK13652 30 KQRIAVIGPNGAGKSTLFKHFNGIL 54 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999947999999996699
No 277
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00047 Score=45.41 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|..-
T Consensus 45 GE~~~llGpsGsGKSTllr~i~Gl 68 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999984899999999769
No 278
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.0005 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 30 GE~vaivG~nGsGKSTL~~~l~Gll 54 (276)
T PRK13650 30 GEWLSIIGHNGSGKSTTVRLIDGLL 54 (276)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999987999999997388
No 279
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00056 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|..-
T Consensus 33 GE~v~IiG~nGsGKSTL~k~l~Gl 56 (304)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNAL 56 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999879998599999999669
No 280
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=97.05 E-value=0.00043 Score=45.64 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9719999879999989999999851
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.| +.|+|++++|||||.++|+.+
T Consensus 1 Mkk-VaivGrpNvGKSTLlN~L~g~ 24 (143)
T pfam10662 1 MKK-IMLIGRSGCGKTTLTQALNGE 24 (143)
T ss_pred CCE-EEEECCCCCCHHHHHHHHCCC
T ss_conf 975-999899999999999997599
No 281
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00045 Score=45.54 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 33 Ge~~~iiG~nGsGKSTLl~~l~Gll 57 (286)
T PRK13641 33 GSFVALIGHTGSGKSTLMQHFNALL 57 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999999839999999996598
No 282
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00089 Score=43.73 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|+.-.
T Consensus 31 Ge~~aiiG~NGsGKSTLl~~l~Gl~ 55 (273)
T PRK13647 31 GSKTAILGPNGAGKSTLLLHLNGIY 55 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999975999999996698
No 283
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00054 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|.+++|+|||||||+||.+.|..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 86899987888868999999866
No 284
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.03 E-value=0.00098 Score=43.47 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.++.-.+
T Consensus 26 Gei~~liG~nGaGKSTLl~~i~Gl~~ 51 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98999999999859999999977988
No 285
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00058 Score=44.85 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|..-.
T Consensus 28 Ge~vaiiG~nGsGKSTL~~~l~Gll 52 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999999980999999997068
No 286
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.03 E-value=0.00062 Score=44.69 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.+..-.|
T Consensus 23 Ge~v~iiGpNGaGKSTLlk~i~Gl~p 48 (245)
T PRK03695 23 GEILHLVGPNGAGKSTLLARMAGLLS 48 (245)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999997899419999999846688
No 287
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.03 E-value=0.00068 Score=44.43 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=56.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE
Q ss_conf 719999879999989999999851898-1799860278889883346420100145542210278187666612870454
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt 80 (186)
++.|+++||.||||||+++.|+...|. -..+++-= -|.+-..++.+ . +....-.+.. +
T Consensus 139 ~~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiE--D~~El~l~~~~----------------~-v~l~~~~~~~--t 197 (283)
T pfam00437 139 RGNILVSGGTGSGKTTLLYALLNEINTDDERIVTIE--DPVEIQLEGPN----------------Q-VQLNTRLAGV--T 197 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC--CCCEECCCCCC----------------E-EEEEECCCCC--C
T ss_conf 975999889999889999999984087776278733--78523179887----------------8-9998558876--9
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCE---EEEHCCCCCHHHHHHHHHHCCCCC
Q ss_conf 422002334310242002542000244---42054320---000002321899998762014544
Q gi|254780132|r 81 LKEDINNPMEHGYDILLILTHQGLAPL---KKLYEDQV---TSIFIAPPSEAELIQRRIKRREDI 139 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~id~~G~~~l---k~~~~~~~---~~IfI~pps~~~L~~RL~~R~~e~ 139 (186)
..+.+...+..+-+.|+.=++.|.... +...--.. -++ -+.|-.....||..=|.+.
T Consensus 198 ~~~ll~~~LR~~PD~IivGEiR~~Ea~~~l~a~~TGH~g~ltTi--HA~sa~~ai~RL~~lg~~~ 260 (283)
T pfam00437 198 FADLLRAALRQRPDRIMVGEIRDGETADILRAANTGHPGSLSTL--HANSAAGALTRLEQLGMEL 260 (283)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCCC
T ss_conf 99999996388999897578699899999999975998407857--1499899999999856436
No 288
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00054 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.+..-
T Consensus 37 Ge~~aIiG~nGsGKSTL~~~l~Gl 60 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995799999999659
No 289
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.02 E-value=0.0012 Score=42.89 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=35.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCHHHCCHHHHHHHHCC
Q ss_conf 719999879999989999999851898179986027888988--334642010014554221027
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQFKGWKHT 64 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~--E~~g~dY~Fvs~~~F~~~i~~ 64 (186)
|++..|+||||+||+||.+.+.... +|..| +++|.+.-=.|+++-.++.+.
T Consensus 34 Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 34 GEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCCCHHCCCHHHHHHHHHH
T ss_conf 8189998898868999999985657------------8988759984764110498899999843
No 290
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.02 E-value=0.00091 Score=43.68 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 9999879999989999999851898179986027
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
=|+++||+|||||-|++.|.. .-+..|++.--|
T Consensus 111 NILliGPTG~GKTlla~tLAk-~l~vPF~iaDAT 143 (411)
T PRK05342 111 NILLIGPTGSGKTLLAQTLAR-ILNVPFAIADAT 143 (411)
T ss_pred CEEEECCCCCCHHHHHHHHHH-HHCCCEEEEEEC
T ss_conf 389989999778899999999-869998998612
No 291
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.0011 Score=43.29 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.++...
T Consensus 31 Gei~~liG~NGaGKSTLl~~i~G~~ 55 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799998799975999999996799
No 292
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.01 E-value=0.00066 Score=44.53 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.++...+
T Consensus 30 Gei~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999998999889999999966888
No 293
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.00 E-value=0.0022 Score=41.40 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998799999899999998518
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+++.||+|+||+|++..++...
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l 60 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALAREL 60 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9888929848999999999996
No 294
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.00 E-value=0.00068 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||+|+||||+++-|...
T Consensus 25 GEiv~ilGpNGaGKSTllk~i~G~ 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999999999999688
No 295
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.99 E-value=0.0011 Score=43.29 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 719999879999989999999851898
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY 28 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~ 28 (186)
|.|+|++||+|+|||+|.+...+-..+
T Consensus 349 g~IlclvGpPGvGKTSl~~sIA~al~r 375 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGR 375 (784)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 877996469987724699999998589
No 296
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.0013 Score=42.76 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 719999879999989999999851898
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY 28 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~ 28 (186)
|.++.|+|||||||||+++.|+.-.+.
T Consensus 42 GE~vaLvGeSGSGKSTl~~~l~gll~~ 68 (623)
T PRK10261 42 GETLAIVGESGSGKSVTALALMRLLEQ 68 (623)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 989999989997899999999779878
No 297
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.98 E-value=0.00023 Score=47.32 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=34.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC--CCCCHHHCC
Q ss_conf 987999998999999985189817998602788898833--464201001
Q gi|254780132|r 7 LIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEK--QYIDYRFIS 54 (186)
Q Consensus 7 i~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~--~g~dY~Fvs 54 (186)
|+|++.+||+||.++|+.......-..+.|||.+-.+.. +|..+.|++
T Consensus 2 ivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvD 51 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILID 51 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEE
T ss_conf 04899988999999995887535407999356678999999998899985
No 298
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.98 E-value=0.0013 Score=42.66 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=41.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEE
Q ss_conf 719999879999989999999851898179986027888988334642010014554221027818766
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIET 70 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~ 70 (186)
|-|-+|+||=|||||||++.|+-++ ....+--..+ -+|+| +.+=+=++.-..|-||-.
T Consensus 26 GE~HAiMGPNGsGKSTL~~~iaGhp-~y~vt~G~I~-------f~G~D---ll~l~~~ERAR~GlFLaF 83 (248)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGHP-KYEVTSGTIL-------FKGQD---LLELEPDERARAGLFLAF 83 (248)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-CEEEEEEEEE-------ECCEE---CCCCCHHHHHCCCCEECC
T ss_conf 5179986889984788877761799-3378420898-------77652---001896556405651015
No 299
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=96.97 E-value=0.00073 Score=44.26 Aligned_cols=26 Identities=38% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.++.-.+
T Consensus 29 Gei~~liGpNGaGKSTLl~~i~Gl~~ 54 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999988999869999999967888
No 300
>PRK13768 GTPase; Provisional
Probab=96.97 E-value=0.00084 Score=43.89 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 971999987999998999999985189
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.-.++++||+||||||+++.+.+...
T Consensus 1 M~~~~~ViGpaGSGKsT~~~~l~~~l~ 27 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLVGALSDWLE 27 (253)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 971899989999988999999999999
No 301
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0012 Score=43.00 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=34.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCHHHCCHHHHHHHH
Q ss_conf 719999879999989999999851898179986027888988--3346420100145542210
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQFKGWK 62 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~--E~~g~dY~Fvs~~~F~~~i 62 (186)
|.++-|+|+|||||||+++.++.-.+.-..+ -.| ..+|.|..-++..+..+..
T Consensus 33 GEilgivGeSGsGKSTl~~~ilgll~~~~~~--------~~g~i~~~g~dl~~~~~~~~~~~~ 87 (327)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGRV--------MAEKLEFNGQDLQRISEKERRNLV 87 (327)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCE--------EEEEEEECCEECCCCCHHHHHHHH
T ss_conf 9999999999878999999997488989976--------542799999997749999999863
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.97 E-value=0.0017 Score=42.00 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
|.++.|+|||||||+||++-|..
T Consensus 34 Ge~v~i~G~nGsGKSTll~~l~g 56 (648)
T PRK10535 34 GEMVAIVGASGSGKSTLMNILGC 56 (648)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999629999999956
No 303
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0011 Score=43.07 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||++.|..-.+
T Consensus 26 Gei~~iiGpnGaGKSTl~~~i~Gl~~ 51 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999739999999975999
No 304
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.96 E-value=0.00081 Score=43.97 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.+|.++|.||||||||+++|....
T Consensus 2 G~viW~TGLsGsGKTTlA~~l~~~L 26 (157)
T pfam01583 2 GCTVWFTGLSGSGKSTIANALERKL 26 (157)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8899988989999999999999999
No 305
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.96 E-value=0.0013 Score=42.83 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97199998799999899999998518
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
.|.++.|+||+|+|||||++.|+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLlk~i~Gl~ 52 (206)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLLAGLL 52 (206)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99499998999998999999995887
No 306
>KOG0057 consensus
Probab=96.96 E-value=0.00078 Score=44.10 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHC-----CCEEEEEEEECCC
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102-----7818766661287
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH-----TGLFIETTKVRDE 76 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~-----~~~FiE~~~~~g~ 76 (186)
|+=+.|+|+|||||+|+.+.|+.-+++-. .|. +||+|-.=++.+.+.+.|. .-.|=+. -.+.-
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~d~sG-~I~----------IdG~dik~~~~~SlR~~Ig~VPQd~~LFndT-Il~NI 445 (591)
T KOG0057 378 GEKVAIVGSNGSGKSTILRLLLRFFDYSG-SIL----------IDGQDIKEVSLESLRQSIGVVPQDSVLFNDT-ILYNI 445 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCC-CEE----------ECCEEHHHHCHHHHHHHEEEECCCCCCCCHH-HHHHH
T ss_conf 97898978999878899999999744688-599----------9873376507577652216767766430065-99886
Q ss_pred EEEEECCCHHHHHHH
Q ss_conf 045442200233431
Q gi|254780132|r 77 YYGYLKEDINNPMEH 91 (186)
Q Consensus 77 ~YGts~~~i~~~~~~ 91 (186)
.||-+..+-+++.+.
T Consensus 446 ~YGn~sas~eeV~e~ 460 (591)
T KOG0057 446 KYGNPSASDEEVVEA 460 (591)
T ss_pred HCCCCCCCHHHHHHH
T ss_conf 328987688999999
No 307
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=96.95 E-value=0.00036 Score=46.15 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=51.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-E--------EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEEC
Q ss_conf 9999879999989999999851898-1--------799860278889883346420100145542210278187666612
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY-L--------VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVR 74 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~-~--------~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~ 74 (186)
+|||+||.|||||.|+=.|.++.+- + +--..=-|=+|-.+|..++-+|-|+- +++.+-+
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Di------------ldp~e~y 68 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDI------------LDPSESY 68 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEEC------------CCCCCCC
T ss_conf 9677408855477899998876895787435023223787535788968753498158513------------4712003
Q ss_pred --CCEEEEECCCHHHHHHHCCCCCCC
Q ss_conf --870454422002334310242002
Q gi|254780132|r 75 --DEYYGYLKEDINNPMEHGYDILLI 98 (186)
Q Consensus 75 --g~~YGts~~~i~~~~~~g~~~il~ 98 (186)
..|+--....|.++.+.|+++|++
T Consensus 69 ~~~~F~~~~~~~~~~i~~~Gkipl~V 94 (307)
T TIGR00174 69 SAADFQTQALNAIADITARGKIPLLV 94 (307)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 70889999999999998569834886
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.95 E-value=0.00073 Score=44.24 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.|....+
T Consensus 29 Ge~~~LvG~NGaGKSTL~k~l~G~l~ 54 (490)
T PRK10938 29 GDSWAFVGSNGSGKSALARALAGELP 54 (490)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999997999779999999956998
No 309
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00073 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|..-.
T Consensus 28 Ge~vaiiG~nGsGKSTLl~~l~Gll 52 (275)
T PRK13639 28 GEMIAILGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999964999999997398
No 310
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0012 Score=42.96 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|+|||||++.|+...
T Consensus 25 Ge~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799998788999899999995884
No 311
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.00099 Score=43.45 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE-CCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEEC-CCEEE
Q ss_conf 7199998799999899999998518981799860-278889883346420100145542210278187666612-87045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGV-TTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVR-DEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~-TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~-g~~YG 79 (186)
++-|+++||.||||||+++.|++..|.-...++. .++.......+.. + +++.... +....
T Consensus 25 ~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v--~----------------l~~~~~~~~~~~~ 86 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWV--R----------------LVTRPGNVEGSGE 86 (186)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEE--E----------------EEEECCCCCCCCE
T ss_conf 998999899999899999999961334564598415354047777568--8----------------8860464578650
Q ss_pred -EECCCHHHHHHHCCCCCCCCCCCHHHH---HHHCC-CC-CE-EEEHCCCCCHHHHHHHHHH---CCCCCHHHHHHHHHH
Q ss_conf -442200233431024200254200024---44205-43-20-0000023218999987620---145448999999998
Q gi|254780132|r 80 -YLKEDINNPMEHGYDILLILTHQGLAP---LKKLY-ED-QV-TSIFIAPPSEAELIQRRIK---RREDIPFNLDPDLFG 149 (186)
Q Consensus 80 -ts~~~i~~~~~~g~~~il~id~~G~~~---lk~~~-~~-~~-~~IfI~pps~~~L~~RL~~---R~~e~~~~i~~r~~~ 149 (186)
+..+.+...+..+-+.++.=++.|... ++... +- .. -++ -++|-.....||.. ........+.+.+
T Consensus 87 ~~~~~li~~aLR~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltTi--Ha~s~~~ai~Rl~~l~~~~~~~~~~~~~~i-- 162 (186)
T cd01130 87 VTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTI--HANSAEEALTRLELLPSNVPLGRPLLREQI-- 162 (186)
T ss_pred ECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCHHHHHHHH--
T ss_conf 3499998873668997373175683999999999974898603031--589999999999988754799999999999--
Q ss_pred HHHCCCEEEE
Q ss_conf 6535988999
Q gi|254780132|r 150 KNHSYSFTIV 159 (186)
Q Consensus 150 ~~~~fD~iIi 159 (186)
..-+|++|.
T Consensus 163 -a~~id~vV~ 171 (186)
T cd01130 163 -KEAIDVIVH 171 (186)
T ss_pred -HHHCCEEEE
T ss_conf -975779999
No 312
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00083 Score=43.93 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||++.|..-.|
T Consensus 31 Ge~~~lvG~nGsGKSTL~~~l~Gl~p 56 (513)
T PRK13549 31 GEIVSLCGENGAGKSTLMKVLSGVYP 56 (513)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 97999989999729999999956788
No 313
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0013 Score=42.72 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||.+.|+.-.
T Consensus 27 Gei~~liGpNGaGKSTLlk~l~Gl~ 51 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999980999999996688
No 314
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0013 Score=42.68 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.+..-.+
T Consensus 31 Gei~~liGpnGaGKSTL~~~i~Gl~~ 56 (255)
T PRK11300 31 QEVVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999998999649999999967988
No 315
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.93 E-value=0.00067 Score=44.50 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCC
Q ss_conf 99998799999899999998518981799860278889883--3464201001
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFIS 54 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs 54 (186)
-++|+|++-+||+||.++|....+.. ...+.|||-+..+. .++..+.|++
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~v-~~~p~TTr~~~~~~~~~~~~~~~liD 53 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVID 53 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEE-CCCCCCCCCCEEEEEEECCCEEEEEC
T ss_conf 79998899988999999995898602-37587235743689998372768724
No 316
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=96.93 E-value=0.00054 Score=45.05 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=26.8
Q ss_pred EECCCCCCHHHHHHHHHHH-CCC---EEEE-EEECCCCCCCCCCC
Q ss_conf 9879999989999999851-898---1799-86027888988334
Q gi|254780132|r 7 LIGASGVGKTTIAKQVVLN-SEY---LVMP-VGVTTRRPRVDEKQ 46 (186)
Q Consensus 7 i~GpsGsGK~tl~~~L~~~-~~~---~~~~-v~~TTR~~R~~E~~ 46 (186)
|.||||||||||..-|..- .|+ +.+. ..-|.+||..=.++
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~vPp~~R~in 45 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTEVPPHLRSIN 45 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 978888747999999834587775507756710121572206146
No 317
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.93 E-value=0.0014 Score=42.64 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.+++|+||+|||||||.+-++.-.
T Consensus 26 G~i~~i~G~NGsGKSTLlk~i~Gl~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999981999999996798
No 318
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.0008 Score=44.01 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|.||||||||||++.+..-
T Consensus 24 g~i~~l~GpsGaGKTTLl~~iaGl 47 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINLISGL 47 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999996299999999768
No 319
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.93 E-value=0.00085 Score=43.85 Aligned_cols=23 Identities=35% Similarity=0.715 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
+-||.|+||.|||||||.+.++=
T Consensus 30 ~gLFlI~G~TGAGKSTIlDAItf 52 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAICL 52 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88788889999988999999999
No 320
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0011 Score=43.11 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.++.-.
T Consensus 33 Ge~~~iiGpNGaGKSTLlk~i~Gll 57 (265)
T PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999998839999999997498
No 321
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00076 Score=44.16 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.+..-.
T Consensus 32 Ge~vaiiG~nGsGKSTLl~~l~Gll 56 (288)
T PRK13643 32 GSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999947999999997488
No 322
>KOG2004 consensus
Probab=96.92 E-value=0.0011 Score=43.27 Aligned_cols=44 Identities=34% Similarity=0.515 Sum_probs=31.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCC
Q ss_conf 71999987999998999999985189--817998602788898833464
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE--YLVMPVGVTTRRPRVDEKQYI 48 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~v~~TTR~~R~~E~~g~ 48 (186)
|+|+|++||+|+|||+|.+....-.. .|.|++--.| ..-|+-|.
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~t---DvAeIkGH 483 (906)
T KOG2004 438 GKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMT---DVAEIKGH 483 (906)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCC---CHHHHCCC
T ss_conf 83799868998773218999999848746998536634---27764254
No 323
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.91 E-value=0.0013 Score=42.66 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=9.9
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 719999879999989999999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQV 22 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L 22 (186)
|+...|||||||||+||+..|
T Consensus 411 G~t~AlVG~SGsGKSTii~LL 431 (1467)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLI 431 (1467)
T ss_pred CCEEEEECCCCCCHHHHHHHH
T ss_conf 977998668887566799999
No 324
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00085 Score=43.85 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.+..-.
T Consensus 32 Ge~~aiiG~NGaGKSTLl~~i~Gll 56 (285)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNGIL 56 (285)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999980999999996598
No 325
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00079 Score=44.04 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 33 Ge~~aiiG~nGsGKSTLl~~l~Gl~ 57 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999599986999999996699
No 326
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.91 E-value=0.00044 Score=45.59 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=34.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC--CCCCHHHCC
Q ss_conf 99987999998999999985189817998602788898833--464201001
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEK--QYIDYRFIS 54 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~--~g~dY~Fvs 54 (186)
|+|+|.|.+|||||+++|+.......-..+.|||.+-.+.. +|..|.|++
T Consensus 5 V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vD 56 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLID 56 (174)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEE
T ss_conf 9999899998999999983898444349999157332899999998899985
No 327
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0013 Score=42.69 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=44.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEECCCCCC-CCCCCCCCHHHC---CHHHHHHHHCCC----EEE--E
Q ss_conf 719999879999989999999851898--1799860278889-883346420100---145542210278----187--6
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY--LVMPVGVTTRRPR-VDEKQYIDYRFI---SQSQFKGWKHTG----LFI--E 69 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~--~~~~v~~TTR~~R-~~E~~g~dY~Fv---s~~~F~~~i~~~----~Fi--E 69 (186)
|.|+||+||+|+|||+|.+...+-..+ +.++.- -.| +.|+-|.---+| .-.-.+.|.+.| -|+ |
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG----GvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDE 425 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG----GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDE 425 (782)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECC----CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf 85799978998870118999999958977999547----65427775355312335687289999998677687478640
Q ss_pred EEEECCCEEEEECCCHHHHH
Q ss_conf 66612870454422002334
Q gi|254780132|r 70 TTKVRDEYYGYLKEDINNPM 89 (186)
Q Consensus 70 ~~~~~g~~YGts~~~i~~~~ 89 (186)
--+....|.|-|-+++-+++
T Consensus 426 IDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 426 IDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred HHHCCCCCCCCHHHHHHHHC
T ss_conf 33316777788688888626
No 328
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.90 E-value=0.0015 Score=42.44 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||||||||||++.|..-.
T Consensus 30 Gei~~liG~nGaGKSTL~~~l~G~~ 54 (501)
T PRK10762 30 GRVMALVGENGAGKSTLMKVLTGIY 54 (501)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9699998999982999999995799
No 329
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0008 Score=44.01 Aligned_cols=21 Identities=52% Similarity=0.767 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 719999879999989999999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQV 22 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L 22 (186)
|-++|++|||||||||+++-.
T Consensus 27 gef~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 728999878997578799999
No 330
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.89 E-value=0.0012 Score=42.92 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 719999879999989999999851898179986
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG 34 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~ 34 (186)
+|=|||+|-.||||||++|.|+...|.=.+.|+
T Consensus 158 ~knIii~GGTgSGKTTf~kal~~~IP~~ER~iT 190 (328)
T TIGR02788 158 RKNIIISGGTGSGKTTFLKALVKEIPKDERLIT 190 (328)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 891999906897189999999732762252788
No 331
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.89 E-value=0.0023 Score=41.20 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998799999899999998518
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+++.||+|+||+|++..|+.+.
T Consensus 40 lLf~GppG~GKTt~a~~la~~l 61 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALAREL 61 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9888959988999999999997
No 332
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.88 E-value=0.00095 Score=43.55 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.++.-.
T Consensus 28 Gei~~llG~NGaGKSTLl~~i~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9599999899973999999996698
No 333
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=96.87 E-value=0.00056 Score=44.95 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=16.5
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 719999879999989999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIA 19 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~ 19 (186)
.+++||+|.|||||+||+
T Consensus 22 ~~lVViTG~SGSGKSSLA 39 (956)
T TIGR00630 22 DKLVVITGLSGSGKSSLA 39 (956)
T ss_pred CCEEEEECCCCCCCHHHH
T ss_conf 866999745688615456
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.87 E-value=0.0014 Score=42.50 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|+-+-|||||||||+||+..|..-++
T Consensus 1195 GqkVaiVGrSGsGKSTii~lL~Rfyd 1220 (1467)
T PTZ00265 1195 KKTTAIVGETGSGKSTFMNLLLRFYD 1220 (1467)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98899989999839999999997763
No 335
>PRK09087 hypothetical protein; Validated
Probab=96.86 E-value=0.012 Score=36.86 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 199998799999899999998518981
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYL 29 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~ 29 (186)
+.++|.||+|||||.|++..++.....
T Consensus 45 ~~~~L~Gp~gsGKTHL~~~~~~~~~a~ 71 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKADAL 71 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 758998999998869999999980996
No 336
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.86 E-value=0.0017 Score=42.08 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|+++.|+||+|||||||++.|+...
T Consensus 26 ge~~~l~G~NGsGKTTl~~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999899984999999984898
No 337
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.85 E-value=0.0011 Score=43.21 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|+|||||++.+..-.
T Consensus 26 Gei~~liGpNGaGKSTL~~~i~Gl~ 50 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999999940999999997799
No 338
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=96.85 E-value=0.028 Score=34.68 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=66.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEE-ECCCCCCCC-CCCCCCHHHCCHHHHHHHH-CCCEEEEEEEECCCE
Q ss_conf 1999987999998999999985189--8179986-027888988-3346420100145542210-278187666612870
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE--YLVMPVG-VTTRRPRVD-EKQYIDYRFISQSQFKGWK-HTGLFIETTKVRDEY 77 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~v~-~TTR~~R~~-E~~g~dY~Fvs~~~F~~~i-~~~~FiE~~~~~g~~ 77 (186)
..|=|+||+|+||+||...|....- +...+|- .---.|+.| -+=| ++-.|+.+- ..+-|+-.---.|+.
T Consensus 30 ~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLG------Dr~RM~~~~~~~~vfiRs~~srg~l 103 (267)
T pfam03308 30 HRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILG------DRTRMQRLAVDPGAFIRSSPSRGAL 103 (267)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC------CHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 5998768998879999999999999689868999978999888863001------0777765058998588645778888
Q ss_pred EEEECCCHHHH---HHHCCCCCCCCCCCHHHHH----HHCCCCCEEEEHCCCCCHHHHHHHHHHCC
Q ss_conf 45442200233---4310242002542000244----42054320000002321899998762014
Q gi|254780132|r 78 YGYLKEDINNP---MEHGYDILLILTHQGLAPL----KKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 78 YGts~~~i~~~---~~~g~~~il~id~~G~~~l----k~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (186)
=|.+..+-+-+ -..|.++|+. +.-|+-|- .+.. +.+.+-+.|-+-+++- ..|+|
T Consensus 104 GGls~~t~~~i~lleaaGfD~Iiv-ETVGVGQsE~~v~~~a--D~~llv~~Pg~GDeiQ--~iKaG 164 (267)
T pfam03308 104 GGLSRATREAILLLDAAGFDVIII-ETVGVGQSEVDIANMA--DTFVLVTIPGGGDDLQ--GIKAG 164 (267)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCHHHHHHC--CEEEEEECCCCCHHHH--HHHHH
T ss_conf 871476999999999779999999-2477775303555415--7689995588760888--98753
No 339
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0093 Score=37.56 Aligned_cols=25 Identities=28% Similarity=0.686 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9719999879999989999999851
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+++-++++||+|+||++++..+.+.
T Consensus 25 l~HAyLF~Gp~G~GK~~~A~~~A~~ 49 (313)
T PRK05564 25 FSHASLIVGEDGIGKSILAKEIANK 49 (313)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8750432799985099999999999
No 340
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.84 E-value=0.00033 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|-+|.|=|||||||+|+++.|.++..
T Consensus 4 ~iiIAIDGPagsGKSTvak~lA~~Lg 29 (714)
T PRK09518 4 MIIVAIDGPAGVGKSSVSRALAQYFG 29 (714)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88999778986589999999999949
No 341
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.84 E-value=0.001 Score=43.37 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=32.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC---EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHH
Q ss_conf 719999879999989999999851898---179986027888988334642010014554221
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY---LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~---~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~ 61 (186)
|.++.|+|+|||||||+++.++.-.+. ....|. .+|+|..=.++.++.+.
T Consensus 42 GEilgivGeSGsGKSTl~~~i~gll~~~~~~sG~I~----------~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT----------FNGREILNLPEKELNKL 94 (330)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE----------ECCEECCCCCHHHHHHH
T ss_conf 989999868987799999999768888883358999----------99998665899999986
No 342
>KOG3220 consensus
Probab=96.83 E-value=0.0039 Score=39.84 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=80.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCCC-C-------------CCC---CCC-------CHHHCCHHHH
Q ss_conf 99998799999899999998518981799-860278889-8-------------833---464-------2010014554
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPR-V-------------DEK---QYI-------DYRFISQSQF 58 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~-v~~TTR~~R-~-------------~E~---~g~-------dY~Fvs~~~F 58 (186)
++-|+|-.|+||+|+.+.+- .. +...+ .-+.-|..- | +|+ ||. +-.| ++.++
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~-G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF-~~~~~ 79 (225)
T KOG3220 3 IVGLTGGIATGKSTVSQVFK-AL-GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVF-SDPKK 79 (225)
T ss_pred EEEEECCCCCCHHHHHHHHH-HC-CCCEECHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCHHHHHHHHH-CCHHH
T ss_conf 99940565667379999999-74-99576278999998559980789999984840005688416899867870-89889
Q ss_pred HHHHCCCEEEEEEEECCCEEEEECCCHHHHHHHCC-CCCCCCCCCHHH-HHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC
Q ss_conf 22102781876666128704544220023343102-420025420002-4442054320000002321899998762014
Q gi|254780132|r 59 KGWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGY-DILLILTHQGLA-PLKKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 59 ~~~i~~~~FiE~~~~~g~~YGts~~~i~~~~~~g~-~~il~id~~G~~-~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (186)
.+.... +-|-.+ .+..- .++...+-.|. .|++|+-.= .. .+.+.+ ..+++|+. + .+.-.+||.+|.
T Consensus 80 r~~Ln~---IthP~I---r~em~-ke~~~~~l~G~r~ivlDiPLL-FE~~~~~~~-~~tvvV~c--d-~~~Ql~Rl~~Rd 147 (225)
T KOG3220 80 RQALNK---ITHPAI---RKEMF-KEILKLLLRGYRVIVLDIPLL-FEAKLLKIC-HKTVVVTC--D-EELQLERLVERD 147 (225)
T ss_pred HHHHHH---CCCHHH---HHHHH-HHHHHHHHCCCEEEEEECHHH-HHHHHHHHE-EEEEEEEE--C-CHHHHHHHHHHC
T ss_conf 999873---133899---99999-999999966882899922688-887677453-25899998--9-089999998744
Q ss_pred CCCHHHHHHHHHH------HHHCCCEEEECC-CHHHHHHHHHHHHHHHHHC
Q ss_conf 5448999999998------653598899939-7899999999999999730
Q gi|254780132|r 137 EDIPFNLDPDLFG------KNHSYSFTIVNN-HLPTACRQVGLIREFVKRG 180 (186)
Q Consensus 137 ~e~~~~i~~r~~~------~~~~fD~iIiNd-dle~a~~~l~~Iie~l~~~ 180 (186)
.-+++..+.|+.+ ....-|++|.|+ ++++..+++..+...+.+.
T Consensus 148 ~lse~dAe~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~~s 198 (225)
T KOG3220 148 ELSEEDAENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALLQKS 198 (225)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCH
T ss_conf 646999998987329878999863164217998689999999999985331
No 343
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.00091 Score=43.68 Aligned_cols=25 Identities=36% Similarity=0.691 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|+++.++||+||||||-+.+|..++
T Consensus 176 ggV~alVGPTGVGKTTTiAKLAAr~ 200 (404)
T PRK06995 176 GGVFALVGPTGVGKTTTTAKLAARC 200 (404)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7558986688876375899999999
No 344
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.81 E-value=0.00089 Score=43.73 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 719999879999989999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIA 19 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~ 19 (186)
++|+|++|||||||+||+
T Consensus 26 ~klvViTGvSGSGKSSLA 43 (944)
T PRK00349 26 DKLVVITGLSGSGKSSLA 43 (944)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 988999889888689999
No 345
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.002 Score=41.65 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||||||||||++.|..-.+
T Consensus 24 Gei~~liG~nGsGKSTL~~~l~Gl~~ 49 (491)
T PRK10982 24 HSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 96999989999819999999956988
No 346
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.81 E-value=0.0011 Score=43.16 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCHHHCC
Q ss_conf 719999879999989999999851898179986027888988--33464201001
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFIS 54 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~--E~~g~dY~Fvs 54 (186)
|--++|+||+-+||+||.+.|+.+.--+.-.++-|||-.=.. +.+|.-..|++
T Consensus 216 G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~D 270 (445)
T PRK05291 216 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLID 270 (445)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf 9869988999876899999985787467318999740402236899998999998
No 347
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.80 E-value=0.00073 Score=44.24 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=32.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999879999989999999851898179986027888988334
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~ 46 (186)
++|+|++.+|||||.+.|....+... ..++|||.|-+|-..
T Consensus 3 V~LVG~PN~GKSTLln~LT~a~~~v~-~ypfTT~~pi~g~~~ 43 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKSEVA-AYEFTTLTCVPGVLE 43 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCEEEEEE
T ss_conf 99999999999999999978995436-989787574777999
No 348
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0012 Score=42.92 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.++.-.
T Consensus 50 GEivgllG~NGaGKSTLlk~I~Gl~ 74 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999899861999999996798
No 349
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=96.78 E-value=0.00079 Score=44.04 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=31.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 99998799999899999998518981799860278889883
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE 44 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E 44 (186)
.+.|+|++-|||+||.+.|+.+.--+.-..+.|||-+=.|-
T Consensus 10 ~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi 50 (296)
T PRK00089 10 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGI 50 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEE
T ss_conf 99999899988899999996896176149599872838999
No 350
>PRK06217 hypothetical protein; Validated
Probab=96.78 E-value=0.0013 Score=42.70 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97199998799999899999998518
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.+| .|+|.|||||+||.++|.+..
T Consensus 1 m~rI-~i~G~sGsGkSTla~~La~~l 25 (185)
T PRK06217 1 MMRI-HITGASGSGTTTLGAALAEAL 25 (185)
T ss_pred CCEE-EEECCCCCCHHHHHHHHHHHH
T ss_conf 9679-997899887899999999975
No 351
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.005 Score=39.20 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9719999879999989999999851
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+++-++++||+|+||.+++..+.+.
T Consensus 27 l~HA~Lf~Gp~G~GK~~~A~~~A~~ 51 (329)
T PRK08058 27 LAHAYLFEGAKGTGKKATALWLAKS 51 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6615655789998899999999999
No 352
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.76 E-value=0.0017 Score=42.01 Aligned_cols=49 Identities=27% Similarity=0.222 Sum_probs=32.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHH
Q ss_conf 71999987999998999999985189817998602788898833464201001455422
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~ 60 (186)
|-.+-|+|||||||+||++.|..--+-..-+|+ .||-|.+==++++|-+
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR----------LDga~l~qWd~e~lG~ 410 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR----------LDGADLRQWDREQLGR 410 (580)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE----------ECCHHHHCCCHHHHCC
T ss_conf 866788788876577899999811356787377----------5626451279888511
No 353
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.76 E-value=0.0011 Score=43.14 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|+.-.
T Consensus 26 GEi~~liG~nGaGKSTll~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCEEEEECCCCCCCCHHHHHHCCCC
T ss_conf 9699998889999263778766986
No 354
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.76 E-value=0.0013 Score=42.68 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|-+..|+||||+||+|+++-++..
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 608998678888789999999841
No 355
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.76 E-value=0.0011 Score=43.27 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=26.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE-E-EEEECCCCC
Q ss_conf 99987999998999999985189817-9-986027888
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLV-M-PVGVTTRRP 40 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~-~-~v~~TTR~~ 40 (186)
|.|+|++.+|||||.++|+... ... . .++-|||.+
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~-~~~~vs~~~gtTr~i 38 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK-KLARTSKTPGKTQLI 38 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CEEEEECCCCEEEEE
T ss_conf 8999899999999999996899-627860789778520
No 356
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.00033 Score=46.30 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||.||||||+++.++.-.+
T Consensus 26 Gei~gllG~NGaGKTTll~~i~Gl~~ 51 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 95999998999849999999960026
No 357
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.75 E-value=0.0018 Score=41.83 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-ECCCCC
Q ss_conf 719999879999989999999851898179986-027888
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG-VTTRRP 40 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~-~TTR~~ 40 (186)
++=|+|+|+.||||||+++.|+...|.-.+.++ =.|+.-
T Consensus 162 r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL 201 (343)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (343)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 9889998889861999999999628965527996115002
No 358
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0015 Score=42.41 Aligned_cols=108 Identities=13% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 719999879999989999999851898179986027888988334--642010014554221027818766661287045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~--g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
+.++.+.|.|||||+||++.|-+..-..... .|-- --.+=.+ ..|+=|-.++.-+....-
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~-~y~L--DGDnvR~gL~~dLgFs~edR~eniRRv--------------- 84 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYH-VYLL--DGDNVRHGLNRDLGFSREDRIENIRRV--------------- 84 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEE--CCHHHHHCCCCCCCCCHHHHHHHHHHH---------------
T ss_conf 8599964688887879999999999975975-8985--574676500578897867899999999---------------
Q ss_pred EECCCHHH-HHHHCCCCCC-CCCCCH-H-HHHHHCCCC-CEEEEHCCCCCHHHHHHH
Q ss_conf 44220023-3431024200-254200-0-244420543-200000023218999987
Q gi|254780132|r 80 YLKEDINN-PMEHGYDILL-ILTHQG-L-APLKKLYED-QVTSIFIAPPSEAELIQR 131 (186)
Q Consensus 80 ts~~~i~~-~~~~g~~~il-~id~~G-~-~~lk~~~~~-~~~~IfI~pps~~~L~~R 131 (186)
..|-+ ..++|.++|. -|.|-- . ...++..+. ..+-|||..| +++.++|
T Consensus 85 ---aevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce~R 137 (197)
T COG0529 85 ---AEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCERR 137 (197)
T ss_pred ---HHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHC
T ss_conf ---9999999878908999751730999999999727686289995798-9999861
No 359
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0025 Score=41.00 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=19.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++.|+||||||||||++.|...
T Consensus 30 Ge~~~lvG~nGaGKSTL~~~l~G~ 53 (501)
T PRK11288 30 GQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 819999899998199999998479
No 360
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.73 E-value=0.00052 Score=45.15 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=29.7
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 9879999989999999851898179986027888988334
Q gi|254780132|r 7 LIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (186)
Q Consensus 7 i~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~ 46 (186)
|+|+++||||||+++|........-..+.|||.+..+..+
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~ 40 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWE 40 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEE
T ss_conf 9197998999999999589961016989986564589999
No 361
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=96.73 E-value=0.0012 Score=42.90 Aligned_cols=21 Identities=33% Similarity=0.773 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 199998799999899999998
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~ 23 (186)
++|+|+||.|||||||.++.+
T Consensus 31 ~~f~i~G~tGAGKtsLldAI~ 51 (1063)
T TIGR00618 31 KLFVICGKTGAGKTSLLDAIT 51 (1063)
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 736777889983545999999
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0032 Score=40.37 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 7199998799999899999998518981799860278889883--34642010014554221027818766661287045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
|.+-+|+||-||||+||+..++.. |.+... .|+ -+|+| |+.-.-++....|-|+-| ++--..=|
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~-p~Y~Vt---------~G~I~~~Ged---I~~l~~~ERAr~GifLaf-Q~P~ei~G 95 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGH-PKYEVT---------EGEILFDGED---ILELSPDERARAGIFLAF-QYPVEIPG 95 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC-CCCEEE---------CCEEEECCCC---CCCCCHHHHHHCCCEEEE-CCCCCCCC
T ss_conf 828999889987889999997289-974675---------5569987854---255998688861877651-17754778
Q ss_pred EECC
Q ss_conf 4422
Q gi|254780132|r 80 YLKE 83 (186)
Q Consensus 80 ts~~ 83 (186)
++..
T Consensus 96 V~~~ 99 (251)
T COG0396 96 VTNS 99 (251)
T ss_pred EEHH
T ss_conf 0099
No 363
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.72 E-value=0.0015 Score=42.40 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999879999989999999851898
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY 28 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~ 28 (186)
+++++||+|+||+||++.|...+..
T Consensus 41 vVavvGPpgvGKtTLiksLvk~ytk 65 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTK 65 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898997788999999999854
No 364
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.72 E-value=0.0014 Score=42.49 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+||||||+++.|+.-.
T Consensus 47 Gei~gLlGpNGaGKSTllk~l~Gl~ 71 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9599999999830999999996494
No 365
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.71 E-value=0.0022 Score=41.38 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|..+.|+||+|||||||++.|....+
T Consensus 29 Ge~vgLVG~NGsGKSTLl~iL~G~~~ 54 (632)
T PRK11147 29 NERVCLVGRNGAGKSTLMKILSGEVL 54 (632)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999879999999838998
No 366
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0033 Score=40.31 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCC
Q ss_conf 971999987999998999999985189--8179986027888988
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSE--YLVMPVGVTTRRPRVD 43 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~v~~TTR~~R~~ 43 (186)
|..=|.++||+||||+|++.++.+... ++... -.-|-..|.|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-Gf~t~EVR~g 47 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-GFITPEVREG 47 (179)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE-EEEEEEEECC
T ss_conf 5459998679984589999999999985596651-3983114208
No 367
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.71 E-value=0.0026 Score=40.87 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+||||||+++.|+...
T Consensus 31 Gei~gllG~NGAGKTTllk~l~Gl~ 55 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9599998999998999999996797
No 368
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.71 E-value=0.00073 Score=44.25 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEEC---CCCCCCCCCCCCC
Q ss_conf 999987999998999999985189--81799-8602---7888988334642
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE--YLVMP-VGVT---TRRPRVDEKQYID 49 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~--~~~~~-v~~T---TR~~R~~E~~g~d 49 (186)
||.|+|||+||||||+.+|..... ++..+ |=|. +-.++-+. +|+|
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~-~GkD 51 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDK-EGKD 51 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECC-CCCC
T ss_conf 93789625886789999999999707995089860898887565279-9873
No 369
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.70 E-value=0.002 Score=41.58 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-ECCCC
Q ss_conf 19999879999989999999851898179986-02788
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG-VTTRR 39 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~-~TTR~ 39 (186)
+=|+|+|+.||||||+++.|+...|.-.+.++ =.|+.
T Consensus 161 ~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~E 198 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDARE 198 (332)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHH
T ss_conf 71999888898899999999835895353566314066
No 370
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0015 Score=42.38 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 199998799999899999998518
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+++.++||.||||||-+.+|..++
T Consensus 224 kvi~lVGPTGVGKTTTiAKLAA~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998999988899999999999
No 371
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.69 E-value=0.0014 Score=42.62 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=29.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCC-CCCCCCC
Q ss_conf 99987999998999999985189--817998602788898-8334642
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSE--YLVMPVGVTTRRPRV-DEKQYID 49 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~--~~~~~v~~TTR~~R~-~E~~g~d 49 (186)
|.|+||+|+|||||++++++... ++... -.-|.+.|. |..-|-+
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~-GF~T~evre~g~R~GF~ 48 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVG-GFYTPEVREGGRRIGFD 48 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEE-EEEECCEECCCCEEEEE
T ss_conf 899789998899999999999986797074-89930212589378999
No 372
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.69 E-value=0.0034 Score=40.24 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1999987999998999999985189
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
-+.+|+|++|+||||+++.|+++.+
T Consensus 44 g~~lltGe~GtGKTtllr~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6599972998988999999998459
No 373
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0022 Score=41.34 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|..+.|+||+|||||||++.|....+
T Consensus 27 Ge~vgLVG~NGsGKSTLlklL~G~~~ 52 (638)
T PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 98999988999889999999808998
No 374
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.67 E-value=0.00041 Score=45.80 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=26.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCHHHCCHHHH
Q ss_conf 999879999989999999851898179986027888988--334642010014554
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQF 58 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~--E~~g~dY~Fvs~~~F 58 (186)
|.|+|.+-+||+||.+.|+.+.--+.-.++-|||-+=.. +-+|..|.|++-.-+
T Consensus 175 iaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGi 230 (438)
T PRK00093 175 IAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGI 230 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCC
T ss_conf 99955888655678887654333204799985112326799989967999989898
No 375
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=96.67 E-value=0.0015 Score=42.33 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|-|+.|+||||.||+|.++.|.+..
T Consensus 118 Gs~LLi~GPsGCgKsT~~k~LsKel 142 (670)
T TIGR00602 118 GSILLITGPSGCGKSTTIKILSKEL 142 (670)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5378841755884478999998886
No 376
>KOG0744 consensus
Probab=96.67 E-value=0.0015 Score=42.29 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
.|+|.+-||+|.||++|++.|+++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1489985799988227999998751
No 377
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.67 E-value=0.0017 Score=42.01 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+||||||+.+.+..-.
T Consensus 26 Gei~~llGpNGAGKSTll~~i~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9599999999961999999997799
No 378
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.67 E-value=0.002 Score=41.64 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 9999879999989999999851898179986027888988
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD 43 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~ 43 (186)
.++|+|++-+|||||.++|....+ .....+.|||-|...
T Consensus 43 ~VaivG~PNvGKSTLlN~L~g~~~-~v~~~~~tT~d~~~~ 81 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTR 81 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCCEEE
T ss_conf 799988999989999999948996-341567764576366
No 379
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.0017 Score=42.11 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH-HCCCEE
Q ss_conf 71999987999998999999985-189817
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL-NSEYLV 30 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~-~~~~~~ 30 (186)
|+++.|.||||||||||.+-+.. ..|.-.
T Consensus 28 Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G 57 (345)
T COG1118 28 GELVALLGPSGAGKSTLLRIIAGLETPDAG 57 (345)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 868999778987678899998575778875
No 380
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.66 E-value=0.0015 Score=42.44 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998799999899999998518
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+|.++|.||||||||++.|....
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98987999999999999999999
No 381
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.66 E-value=0.0014 Score=42.47 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 719999879999989999999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQV 22 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L 22 (186)
|.++.|+||||||||||+-.+
T Consensus 21 Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 21 NKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHH
T ss_conf 989999878996098983616
No 382
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.66 E-value=0.0018 Score=41.88 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|++.+|+||-|||||||.+.|..-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~~~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 979999899888999999998656
No 383
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.66 E-value=0.0024 Score=41.11 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|-.+.|+||+|||||||++.|+...+
T Consensus 345 Ge~ialvG~NGsGKSTLlk~l~G~l~ 370 (632)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLMLGQLQ 370 (632)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 87799988988427799998606668
No 384
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.66 E-value=0.002 Score=41.60 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9719999879999989999999851898
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEY 28 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~ 28 (186)
.+..+.|.||+|+||||+++.|+.....
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~ 28 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 9978999999970299999999987266
No 385
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=96.66 E-value=0.0034 Score=40.24 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCC--CCCCCHHHCCHHHHHHHHC
Q ss_conf 971999987999998999999985189-81799860278889883--3464201001455422102
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKH 63 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E--~~g~dY~Fvs~~~F~~~i~ 63 (186)
+|+++-|+|.|||||+.-+..++.-.| +...+- || .+|+++.=..+++++..+.
T Consensus 11 ~G~~~aLvG~SGSGKS~tc~A~Lg~L~~~~~~~~---------G~i~l~G~~~~~~p~kemr~~Rg 67 (239)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS---------GEILLDGRPLLALPKKEMRSIRG 67 (239)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE---------EEEEECCCCCCCCCHHHHHHHHH
T ss_conf 2437888748787589999998503586522310---------26677172314587368998866
No 386
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0016 Score=42.25 Aligned_cols=25 Identities=40% Similarity=0.671 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+++|+++||+||||||-+.+|...+
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~ 198 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6289998998875787999999999
No 387
>pfam03976 PPK2 Polyphosphate kinase 2 (PPK2). Inorganic polyphosphate (polyP) plays a role in metabolism and regulation and has been proposed to serve as a energy source in a pre-ATP world. In prokaryotes, the synthesis and utilisation of polyP are catalysed by PPK1, PPK2 and polyphosphatases. Proteins with a single PPK2 domain catalyse polyP-dependent phosphorylation of ADP to ATP, whereas proteins containing 2 fused PPK2 domains phosphorylate AMP to ADP. The structure of PPK2 from Pseudomonas aeruginosa has revealed a a 3-layer alpha/beta/alpha sandwich fold with an alpha-helical lid similar to the structures of microbial thymidylate kinases.
Probab=96.65 E-value=0.015 Score=36.38 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 9999879999989999999851-898179986027888988334642010014554221027818766661287045442
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN-SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~-~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
|||+-|..||||+.+++.|.+. +|....+ |+.-+|-.-|. ..+ |.- --...+=..|.+ +-|++-+|+-..
T Consensus 33 iIv~eG~daaGKg~~I~~l~~~lDPrg~~v--~~~~~pt~eE~-~~p--~lw-Rfw~~lP~~G~I---~iFdrSWY~~~l 103 (229)
T pfam03976 33 VVIFEGRDAAGKGGAIKRITEALNPRGARI--VALPAPTEEER-SQW--YFQ-RYVQHLPAGGEI---VLFDRSWYNRAG 103 (229)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCEEEE--EECCCCCHHHH-CCC--HHH-HHHHHCCCCCEE---EEECCCHHHHHH
T ss_conf 999966577873699999986259885699--86899997884-786--199-998637777818---997462556689
Q ss_pred -CCHHHHHHHCC--CCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCC
Q ss_conf -20023343102--420025420002444205432000000232189999876201454
Q gi|254780132|r 83 -EDINNPMEHGY--DILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRED 138 (186)
Q Consensus 83 -~~i~~~~~~g~--~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e 138 (186)
+-+........ ..+- +++..-+.-..-+.-++-+|+.. |.++..+||.+|..+
T Consensus 104 ~~rv~g~~~~~~~~~~~~--~I~~FE~~L~~~G~~ivKf~lhI-sk~eQ~~Rl~~r~~~ 159 (229)
T pfam03976 104 VERVMGFCTPKQYERFLR--EIPEFERMLTDSGIRVVKFWLSI-SDEEQLERFKERRND 159 (229)
T ss_pred HHHHHCCCCHHHHHHHHH--HHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHHCC
T ss_conf 999834499999999999--99999999996794599998854-989999999987429
No 388
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=96.65 E-value=0.0011 Score=43.18 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=12.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|+|=.|+|.||+|||||++.|.++
T Consensus 853 G~lTALMG~SGAGKTTLLn~La~R 876 (1466)
T TIGR00956 853 GTLTALMGASGAGKTTLLNVLAER 876 (1466)
T ss_pred CEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 857651578876357888644330
No 389
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.64 E-value=0.0023 Score=41.22 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998799999899999998518
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+|.|.|||||||+|+++.|.+++
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97883688887258999999995
No 390
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.64 E-value=0.002 Score=41.55 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 719999879999989999999851898179
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVM 31 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~ 31 (186)
.+|.+|.||+|+||+|.++.|.... ++.+
T Consensus 45 ~~iLlLtGPaG~GKTTTI~lLAkeL-G~ei 73 (490)
T pfam03215 45 QLILLLTGPSGCGKSTTVKVLSKEL-GIEI 73 (490)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-CCEE
T ss_conf 3189987989988999999999975-9689
No 391
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.63 E-value=0.0029 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=24.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 999879999989999999851898179986027
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
+++.||+|+|||||++-+......-....+.|+
T Consensus 40 ~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~ 72 (417)
T PRK13342 40 MILWGPPGTGKTTLARIIAGATDAEFEALSAVT 72 (417)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 998896999899999999998689889961410
No 392
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.63 E-value=0.0014 Score=42.52 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=16.4
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 719999879999989999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIA 19 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~ 19 (186)
+||+||+|+|||||+||+
T Consensus 961 nkLvViTGvSGSGKSSLA 978 (1809)
T PRK00635 961 NALTAITGPSASGKHSLV 978 (1809)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 866999789888689999
No 393
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.63 E-value=0.0026 Score=40.90 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
+.||.|=|||||||+|+++.|.++..
T Consensus 284 ~~IIAIDGPAgSGKSTvAK~lA~~L~ 309 (512)
T PRK13477 284 RPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 87799867875787899999999819
No 394
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.62 E-value=0.0032 Score=40.40 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 999879999989999999851898179986027
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
+|+-||+|+|||||++-+.+....-....+.||
T Consensus 55 ~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~ 87 (726)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (726)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 788897999999999999887488679985620
No 395
>PTZ00243 ABC transporter; Provisional
Probab=96.61 E-value=0.0033 Score=40.32 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=25.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 71999987999998999999985189817998
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPV 33 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v 33 (186)
|++.+|+||.||||+||...|+.+.+.....+
T Consensus 686 G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v 717 (1560)
T PTZ00243 686 GKLTVVLGATGSGKSTLLQSLLSQFEISEGRV 717 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 97899989999879999999968884356389
No 396
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.60 E-value=0.0013 Score=42.76 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=54.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 99987999998999999985189817998602788898--8334642010014554221027818766661287045442
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRV--DEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~--~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
|+|+|-+-+||+||.++|+.+.--+.-.++-|||-+=. =|.+|..|.||+-.-+....+-.+=+|+ |.+.+
T Consensus 181 iaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~-------~Sv~r 253 (444)
T COG1160 181 IAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEK-------YSVAR 253 (444)
T ss_pred EEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEE-------EEEHH
T ss_conf 99992787870588877506825984599986220331258998818999987787746641242688-------75054
Q ss_pred CCHHHHHHHCCCCCCCCCC
Q ss_conf 2002334310242002542
Q gi|254780132|r 83 EDINNPMEHGYDILLILTH 101 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~ 101 (186)
+ ..+++.-.+|++.+|.
T Consensus 254 -t-~~aI~~a~vvllviDa 270 (444)
T COG1160 254 -T-LKAIERADVVLLVIDA 270 (444)
T ss_pred -H-HHHHHHCCEEEEEEEC
T ss_conf -6-7678656889999988
No 397
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.60 E-value=0.0021 Score=41.51 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|+|||||++.++.-.
T Consensus 28 Gei~~liGpNGaGKSTLl~~i~Gl~ 52 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999899975999999996795
No 398
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.002 Score=41.55 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|..+-|+|||||||+||++.|..-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 978999848989888999999565
No 399
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.58 E-value=0.0031 Score=40.48 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 199998799999899999998518
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
+-++|.||+|+|||++++.+.+..
T Consensus 20 ~~ill~GppGtGKT~la~~ia~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 808998999988659999999971
No 400
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.58 E-value=0.0016 Score=42.19 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=34.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCHHHCC
Q ss_conf 999879999989999999851898179986027888988334--64201001
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFIS 54 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~--g~dY~Fvs 54 (186)
+.|+|++.+||+||.++|+.... ..-..+-|||-+..+... |..+.||+
T Consensus 2 VaIvG~PNvGKSTLlN~L~g~~~-~Vs~~pGtTrd~~~~~~~~~~~~~~lvD 52 (188)
T pfam02421 2 IALVGNPNVGKTTLFNALTGARQ-HVGNWPGVTVEKKEGTFKYKGYEIEIVD 52 (188)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf 89988999899999999959996-5638999723335768752516799996
No 401
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.57 E-value=0.002 Score=41.64 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
+++|+|+||.|+||||-..+|...+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 85799989988758879999999997
No 402
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0034 Score=40.22 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+|||||||++.|+...
T Consensus 26 Gei~gl~G~NGaGKSTLl~~i~Gl~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9399998789979999999997685
No 403
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.55 E-value=0.0023 Score=41.22 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||+||||+||++.|+.-.
T Consensus 26 Gei~gliG~nGaGKSTL~~~i~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999899973999999996798
No 404
>PRK13695 putative NTPase; Provisional
Probab=96.54 E-value=0.0025 Score=40.98 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCC-CCCCCCC
Q ss_conf 999987999998999999985189--817998602788898-8334642
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSE--YLVMPVGVTTRRPRV-DEKQYID 49 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~--~~~~~v~~TTR~~R~-~E~~g~d 49 (186)
-|.|+||+|+|||||++++++... ++.. .-+-|.+.|. |+.-|-+
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v-~GF~T~Evre~G~R~GF~ 52 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKV-GGFITEEVREGGKRIGFK 52 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE-EEEEEEEEECCCEEEEEE
T ss_conf 999878999889999999999986369617-469952560388285059
No 405
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.54 E-value=0.0022 Score=41.39 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE-E-EEECCCCC
Q ss_conf 9999879999989999999851898179-9-86027888
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVM-P-VGVTTRRP 40 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~-~-v~~TTR~~ 40 (186)
-|+|+|.+.|||+||.++|+.+. .+.. + .+-|||..
T Consensus 20 ~IaivGrpNvGKSTL~N~L~g~k-~~a~vs~~pGtTr~i 57 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALTNRK-KLARTSKTPGRTQLI 57 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CEEEECCCCCEEEEC
T ss_conf 89998699988899999986898-558970899736602
No 406
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=96.53 E-value=0.0019 Score=41.70 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=80.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCE-EEEEEEECCCEEE
Q ss_conf 71999987999998999999985-189817998602788898833464201001455422102781-8766661287045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL-NSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGL-FIETTKVRDEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~-~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~-FiE~~~~~g~~YG 79 (186)
|-++-|+|.|||||+||..-|-. +.|.-.-+. .+|++-.=.|..+.-++..... || | |||--.
T Consensus 31 GE~~~IvG~SGSGKSTLLHlLGGLD~PT~G~v~-----------f~G~~l~~lS~~~~~~LRN~~LGFi-Y-QFHHLL-- 95 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL-----------FNGQSLSKLSSNERAKLRNKKLGFI-Y-QFHHLL-- 95 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-----------ECCCCHHHCCHHHHHHHHHHHCCCE-E-EHHHCC--
T ss_conf 633798736787168999987306899631589-----------7063234404467887512225844-4-320203--
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHHCC-----CCCHH-HHHHHHHHHHHC
Q ss_conf 442200233431024200254200024442054320000002321899998762014-----54489-999999986535
Q gi|254780132|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-----EDIPF-NLDPDLFGKNHS 153 (186)
Q Consensus 80 ts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-----~e~~~-~i~~r~~~~~~~ 153 (186)
+-+.+++++. -++|+ |-++.+.. ...+.-+. ....|..|+..|- .|-+. .|+|.+.+.
T Consensus 96 ~dFtaLENVa----MP~LI----g~~s~~ea-~~~A~~mL----~~VgL~~R~~h~PSELSGGERQRvAIARALvN~--- 159 (221)
T TIGR02211 96 PDFTALENVA----MPLLI----GKKSKKEA-KERAYEML----EKVGLEHRINHRPSELSGGERQRVAIARALVNQ--- 159 (221)
T ss_pred CCCCHHHHHH----HHHHH----CCCCHHHH-HHHHHHHH----HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC---
T ss_conf 0000268877----77753----58998899-99999998----860733445557773456337999999986189---
Q ss_pred CCEEEECC---CHHH-HHHHHHHHHHHHHHCCCCC
Q ss_conf 98899939---7899-9999999999997301258
Q gi|254780132|r 154 YSFTIVNN---HLPT-ACRQVGLIREFVKRGKKAN 184 (186)
Q Consensus 154 fD~iIiNd---dle~-a~~~l~~Iie~l~~~~~~~ 184 (186)
-+.|+--. +||. +.+.|=+.+..|++.+++.
T Consensus 160 P~lvlADEPTGNLD~~~a~~iF~L~~eLN~~~~Ts 194 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKSIFELMLELNRELNTS 194 (221)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 76586129885323777999999999988653916
No 407
>PRK06851 hypothetical protein; Provisional
Probab=96.53 E-value=0.0023 Score=41.20 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
.|||||-|++|+||+|+++++.+.+
T Consensus 31 ~ri~ilKGGpGtGKStlmK~ig~~~ 55 (368)
T PRK06851 31 NRIFILKGGPGTGKSTLMKKIGEEF 55 (368)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2799996899977899999999999
No 408
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0021 Score=41.47 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCC--------EEEEEEEE
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210278--------18766661
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG--------LFIETTKV 73 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~--------~FiE~~~~ 73 (186)
|.||||+|-|||||+||++.+..-.+-....+ .++|.|-.=++.++..++.... ..+-|-++
T Consensus 54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~i----------lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI----------LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCCEE----------EECCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 70899993587878899999735678877438----------98884320189999999986432133443133652257
Q ss_pred CCCE-EEEECCCHHHHH
Q ss_conf 2870-454422002334
Q gi|254780132|r 74 RDEY-YGYLKEDINNPM 89 (186)
Q Consensus 74 ~g~~-YGts~~~i~~~~ 89 (186)
-.|- ||.....+.+.-
T Consensus 124 l~Nv~fGLev~Gv~~~e 140 (386)
T COG4175 124 LENVAFGLEVQGVPKAE 140 (386)
T ss_pred HHHHHCCEEECCCCHHH
T ss_conf 66400153335888899
No 409
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.52 E-value=0.0023 Score=41.27 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=30.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999879999989999999851898179986027888988334
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~ 46 (186)
+.|+|++.||||||.+.|....+... ..+.|||-|-.|.+.
T Consensus 3 VAiiG~pNvGKSTLlN~l~~~~~~V~-~~pgTT~~~~~g~i~ 43 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKIA-DYPFTTLVPNLGVVR 43 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEE-CCCCCCCCCEEEEEE
T ss_conf 89989999989999999967876032-566652374477999
No 410
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0034 Score=40.22 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=22.8
Q ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 971--9999879999989999999851898
Q gi|254780132|r 1 MAH--IFVLIGASGVGKTTIAKQVVLNSEY 28 (186)
Q Consensus 1 m~k--iivi~GpsGsGK~tl~~~L~~~~~~ 28 (186)
|+. +|.|=|||||||+|+++.|.++...
T Consensus 1 m~~~~~IAIDGPagsGKsTvak~lA~~Lg~ 30 (222)
T COG0283 1 MKAAIIIAIDGPAGSGKSTVAKILAEKLGF 30 (222)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 997649997688756847899999998098
No 411
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.52 E-value=0.014 Score=36.43 Aligned_cols=148 Identities=12% Similarity=0.204 Sum_probs=63.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCE--EEEEEEECCC-EEEEE
Q ss_conf 99987999998999999985189817998602788898833464201001455422102781--8766661287-04544
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGL--FIETTKVRDE-YYGYL 81 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~--FiE~~~~~g~-~YGts 81 (186)
||++|.||+|||+|+.+++.. .|.- .|.. .-|.||+--+ +. -.|. -+.-|...|. .|...
T Consensus 3 IvllGd~gVGKTsLi~rf~~~--~F~~--~y~~-------Tig~d~~~k~---i~---~~~~~v~l~IWDTaGqe~f~sl 65 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDD--TFCE--ACKS-------GVGVDFKIKT---VE---LRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCC--CCCC--CCCC-------CCCEEEEEEE---EE---ECCEEEEEEEEECCCCCCCCCC
T ss_conf 999997997299999999549--9999--8799-------7646889999---99---9999999999979886124523
Q ss_pred CCCHHHHHHHCCCCCCCCCCC-HHHHHH-------HCCCCCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 220023343102420025420-002444-------205432000000232189999876201454489999999986535
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQ-GLAPLK-------KLYEDQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKNHS 153 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~-G~~~lk-------~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~~~ 153 (186)
...- =.-..|-++++|++-. ....++ +..+.++ .|.|. -++-.|.. .| ....+-.+.+...-..
T Consensus 66 ~~~y-yr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~-~iiLV-GNK~DL~~---~R--~Vs~~e~~~~A~~~~~ 137 (202)
T cd04120 66 TSAY-YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA-ELLLV-GNKLDCET---DR--EISRQQGEKFAQQITG 137 (202)
T ss_pred HHHH-HHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEE-EECCCCHH---HC--CCCHHHHHHHHHHCCC
T ss_conf 5788-7641445899856888999999999999997466887-18987-65365053---17--8799999999982799
Q ss_pred CCEE----EECCCHHHHHHHH-HHHHHHH
Q ss_conf 9889----9939789999999-9999999
Q gi|254780132|r 154 YSFT----IVNNHLPTACRQV-GLIREFV 177 (186)
Q Consensus 154 fD~i----IiNddle~a~~~l-~~Iie~l 177 (186)
+.|. -.|.++++++..| +.|++..
T Consensus 138 ~~f~EtSAkt~~nV~e~F~~l~~~i~~~~ 166 (202)
T cd04120 138 MRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 88999258999698999999999999858
No 412
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.52 E-value=0.0031 Score=40.45 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=30.9
Q ss_pred EEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCCCEEEECCC
Q ss_conf 00000232189999876201454489999999986------535988999397
Q gi|254780132|r 116 TSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGK------NHSYSFTIVNNH 162 (186)
Q Consensus 116 ~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~------~~~fD~iIiNdd 162 (186)
.+|+|.+| .+.-.+|+.+|..-+.+.+..++... ...-|++|.|+.
T Consensus 124 ~ii~V~a~-~~~r~~R~~~R~~~s~~~~~~~~~~Q~~~~~k~~~aD~iI~N~~ 175 (179)
T cd02022 124 RVIVVDAP-PEIQIERLMKRDGLSEEEAEARIASQMPLEEKRARADFVIDNSG 175 (179)
T ss_pred EEEEEECC-HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCEEEECCC
T ss_conf 58999868-68899999980299899999999968998999985999998999
No 413
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.51 E-value=0.0026 Score=40.87 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=30.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEECCCCCCCCCCCCCC
Q ss_conf 1999987999998999999985189--81799-86027888988334642
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE--YLVMP-VGVTTRRPRVDEKQYID 49 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~-v~~TTR~~R~~E~~g~d 49 (186)
++|-++|.||||||||+.+|+...- ++..+ +-|+-..- +=+..|.|
T Consensus 2 kii~ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H~f-~~D~~GkD 50 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDF-DIDTPGKD 50 (159)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCCCCCCH
T ss_conf 29999967999999999999999997798598997347677-77789844
No 414
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.51 E-value=0.002 Score=41.62 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=53.1
Q ss_pred EEEEECCCCCCHHH-HHHHHHHH-CC--CEEEEEEECCCCCCCCCCCCCCHHH--CCHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 99998799999899-99999851-89--8179986027888988334642010--0145542210278187666612870
Q gi|254780132|r 4 IFVLIGASGVGKTT-IAKQVVLN-SE--YLVMPVGVTTRRPRVDEKQYIDYRF--ISQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 4 iivi~GpsGsGK~t-l~~~L~~~-~~--~~~~~v~~TTR~~R~~E~~g~dY~F--vs~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
||.+.||.|||||| |...|..- .+ ++-.+ -|=++|-- |++-+.+..|.- +|
T Consensus 247 IiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTv------------EDPVEY~i~GIgQ~Qvn~kIgl-------TF---- 303 (495)
T TIGR02533 247 IILVTGPTGSGKTTTLYAALSRLNTPERNILTV------------EDPVEYQIEGIGQIQVNPKIGL-------TF---- 303 (495)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEE------------ECCEEEEECCCCEEEECCCCCH-------HH----
T ss_conf 188417789852588999998635899715686------------5782476248763651465430-------38----
Q ss_pred EEEECCCHHHHHHHCCCCCCC-------------------------CCCCHH-HHHHHCCCCCEEEEHCCCCC-HHHHHH
Q ss_conf 454422002334310242002-------------------------542000-24442054320000002321-899998
Q gi|254780132|r 78 YGYLKEDINNPMEHGYDILLI-------------------------LTHQGL-APLKKLYEDQVTSIFIAPPS-EAELIQ 130 (186)
Q Consensus 78 YGts~~~i~~~~~~g~~~il~-------------------------id~~G~-~~lk~~~~~~~~~IfI~pps-~~~L~~ 130 (186)
-.++..++.|.-++||+ ++.|-| -++-+..+.-+-+..|+ .| .-+|.+
T Consensus 304 ----A~GLRaILRQDPDiiMvGEIRD~ETA~IAiQASLTGHLVLSTLHTNDAAgAvtRL~DMGvEPFL~a-Ssl~GVLAQ 378 (495)
T TIGR02533 304 ----AAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLA-SSLLGVLAQ 378 (495)
T ss_pred ----HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHH
T ss_conf ----888788642799889982316068999999876432576556554015446655532586404899-999999986
Q ss_pred HHHHC
Q ss_conf 76201
Q gi|254780132|r 131 RRIKR 135 (186)
Q Consensus 131 RL~~R 135 (186)
||.+|
T Consensus 379 RLVRr 383 (495)
T TIGR02533 379 RLVRR 383 (495)
T ss_pred HHHHH
T ss_conf 33433
No 415
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.51 E-value=0.0027 Score=40.82 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
.+|++|.||.|+||+||+..|+..+.
T Consensus 78 k~IllL~GPvGsGKStl~~~Lk~~lE 103 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 56999988998877999999999999
No 416
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.49 E-value=0.0028 Score=40.75 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.++.-.+
T Consensus 48 GeivgilG~NGaGKSTLl~~i~Gl~~ 73 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999997999819999999975877
No 417
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.48 E-value=0.0053 Score=39.06 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99987999998999999985189
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
++|.||+|+|||++++.+++...
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~ 24 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALS 24 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 89998997569999999999807
No 418
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.48 E-value=0.0036 Score=40.06 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|..+.|+||+|||||||++.|....
T Consensus 33 Ge~vgLvG~NGaGKSTLlriLaG~~ 57 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999971999999984799
No 419
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.0025 Score=41.03 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71999987999998999999985
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~ 24 (186)
+++-.++||||+||+|+.+.|..
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 80699888988678889999875
No 420
>KOG1970 consensus
Probab=96.47 E-value=0.0012 Score=42.95 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=40.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-C-EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEE
Q ss_conf 71999987999998999999985189-8-179986027888988334642010014554221027818766661287045
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-Y-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~-~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YG 79 (186)
++|..|+||||+||+|.++-|+.... . ...+-+.-++.|- + .+.+-.|.+.--+.+|-.-..|+|...-+|..|+
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~-~--~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~ 186 (634)
T KOG1970 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE-N--LHNETSFLMFPYQSQLAVFESFLLRATKYGSLQM 186 (634)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC-C--CCCCCHHCCCCHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 607998579888713199999986480212304776656655-5--4554400133036678999989999876231653
Q ss_pred EEC
Q ss_conf 442
Q gi|254780132|r 80 YLK 82 (186)
Q Consensus 80 ts~ 82 (186)
...
T Consensus 187 ~g~ 189 (634)
T KOG1970 187 SGD 189 (634)
T ss_pred CCC
T ss_conf 133
No 421
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.46 E-value=0.0022 Score=41.30 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879999989999999851
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~ 25 (186)
||-|+|+|||||||+++.|.+.
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 9897889987799999999998
No 422
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0026 Score=40.92 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
| ++.|+||.|||||||++.++.-.
T Consensus 26 G-i~gllGpNGAGKSTll~~i~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 7-59999999823999999997596
No 423
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.44 E-value=0.003 Score=40.54 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++-|+|+||||||||++.|+.-
T Consensus 317 GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 878999889999989999999487
No 424
>KOG1191 consensus
Probab=96.43 E-value=0.0023 Score=41.29 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCCCCCCHHHC
Q ss_conf 999987999998999999985189817998602788898--83346420100
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRV--DEKQYIDYRFI 53 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~--~E~~g~dY~Fv 53 (186)
=|+|+||+.+||++|.+.|....--+.-+++-|||-.=+ =+++|.--+-+
T Consensus 270 ~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~ 321 (531)
T KOG1191 270 QIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLS 321 (531)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEECCCEEEEEE
T ss_conf 2899769987788999887507744767899964100122763087589997
No 425
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.43 E-value=0.0025 Score=41.05 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCC
Q ss_conf 19999879999989999999851898179986027888988--334642
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYID 49 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~--E~~g~d 49 (186)
-=++|+|++-+||++|.+.|+.+.--+..-++-|||--=+. .++|.-
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p 266 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP 266 (454)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEE
T ss_conf 6499987998867999998866786674289997410378999989889
No 426
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.0026 Score=40.91 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|..+.|+||+|||||||++.|+...
T Consensus 338 GeriaIvG~NGsGKSTLlk~L~G~l 362 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 8479997478713889999972887
No 427
>PRK09183 transposase/IS protein; Provisional
Probab=96.43 E-value=0.0019 Score=41.70 Aligned_cols=35 Identities=37% Similarity=0.425 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 19999879999989999999851898179986027
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
.=++++||+|+|||.|+-.|..+--.-++.|.|+|
T Consensus 102 ~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~ 136 (258)
T PRK09183 102 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 136 (258)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 86799899998689999999999998799399978
No 428
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0067 Score=38.42 Aligned_cols=66 Identities=21% Similarity=0.170 Sum_probs=41.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 719999879999989999999851898179986027888988334642010014554221027818766661287
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDE 76 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~ 76 (186)
|.++-|+|-|||||+||.+.+....+--.-.+.|-+|.-.+ .|-|-.|+.+=..+.. -||+-+|-|
T Consensus 32 GeVLgiVGESGSGKtTlL~~is~rl~p~~G~v~Y~~r~~~~-----~dl~~msEaeRR~L~R----TeWG~VhQn 97 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQP-----RDLYTMSEAERRRLLR----TEWGFVHQN 97 (258)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCC-----HHHHHHCHHHHHHHHH----HCCCEEECC
T ss_conf 73799970588757769999864568877737898489970-----2276645488887765----003415017
No 429
>PRK03918 chromosome segregation protein; Provisional
Probab=96.41 E-value=0.0027 Score=40.77 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 199998799999899999998
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~ 23 (186)
-|++|+||.|||||||..+++
T Consensus 24 Gi~~I~G~nGsGKStIlDAI~ 44 (882)
T PRK03918 24 GINLIIGQNGSGKSSLLDAIL 44 (882)
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 927988999998899999999
No 430
>KOG0055 consensus
Probab=96.41 E-value=0.0038 Score=39.93 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=12.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7199998799999899999998
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~ 23 (186)
|+.+.|+|||||||+|+++-|.
T Consensus 379 G~~valVG~SGsGKST~i~LL~ 400 (1228)
T KOG0055 379 GQTVALVGPSGSGKSTLIQLLA 400 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9889998899987999999999
No 431
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.0034 Score=40.25 Aligned_cols=22 Identities=32% Similarity=0.786 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7199998799999899999998
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~ 23 (186)
+.|++|+||-|||||||..+++
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8837998999997889999999
No 432
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.41 E-value=0.0027 Score=40.78 Aligned_cols=43 Identities=16% Similarity=0.362 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH----CCCEEEEEEECCCCCCCCCCCCCCHHHCCHHH
Q ss_conf 9999879999989999999851----89817998602788898833464201001455
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN----SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQ 57 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~----~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~ 57 (186)
||.++||.||||||=+..|+.. .+.--..| -|=++|-|-++..
T Consensus 129 LiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI-----------EDPIEyvh~~~~s 175 (350)
T TIGR01420 129 LILVTGPTGSGKSTTLASMIDYINKNKAGHIITI-----------EDPIEYVHKNKRS 175 (350)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-----------ECCEEEEECCCEE
T ss_conf 3898768898678999999978740388882563-----------1773141047702
No 433
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.40 E-value=0.0052 Score=39.09 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+|||||||++.|+...|
T Consensus 286 GE~~~i~G~nGsGKSTLl~~l~G~~p 311 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98899986788879999999808897
No 434
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.38 E-value=0.00046 Score=45.44 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=37.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCHHHC
Q ss_conf 19999879999989999999851898179986027888988334--6420100
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFI 53 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~--g~dY~Fv 53 (186)
.+++|+|.+-+||+||.++|+.+.--+.-..+.|||-...+... |..+.+|
T Consensus 2 p~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lv 54 (438)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVI 54 (438)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 98999899998789999998688618715989998471589999999289999
No 435
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.38 E-value=0.0035 Score=40.14 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||.|||||||++.++.-.+
T Consensus 26 Gei~gllG~NGaGKSTLl~~i~Gl~~ 51 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 81999999999999999999957837
No 436
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.38 E-value=0.0037 Score=39.96 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=54.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-E-EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 9999879999989999999851898-1-7998602788898833464201001455422102781876666128704544
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY-L-VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~-~-~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
||+++||.||||+|.+..|+...+. . ..++ |-= |-++|.+-+. ..++.-.+. |..-.+-
T Consensus 3 liLitG~TGSGKTTtl~all~~i~~~~~~~Ii--TiE-------DPiE~~~~~~---------~~~i~q~e~-g~~~~sf 63 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL--TIE-------DPIEFVHESK---------RSLINQREV-GLDTLSF 63 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE--EEC-------CCHHHHCCCC---------CEEEEECCC-CCCCCCH
T ss_conf 89998999997999999999853637883699--964-------7377523676---------448873330-7886379
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHH----HHHCCCCCEEEEHCCCCCHHHHHHHHHHCC
Q ss_conf 2200233431024200254200024----442054320000002321899998762014
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (186)
.+.+..++.+.-++|+.=++.+... ++...--....--+-++|-..-..||..-.
T Consensus 64 ~~~lr~aLR~~PDvI~vGEiRd~et~~~al~aa~TGHlV~sTlHa~sa~~ai~Rl~~~~ 122 (198)
T cd01131 64 ENALKAALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 99999998548885752777899999999999971993999767598999999999968
No 437
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.37 E-value=0.0037 Score=39.98 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||.||||||+++-++.-.
T Consensus 31 Gei~gllG~NGaGKSTllk~i~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8299999999984999999997797
No 438
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=96.37 E-value=0.054 Score=32.94 Aligned_cols=117 Identities=17% Similarity=0.267 Sum_probs=62.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC--CEEEEE-EECCCCCCCC-CCCCCCHHHCCHHHHHHH-HCCCEEEEEEEECCCE
Q ss_conf 1999987999998999999985189--817998-6027888988-334642010014554221-0278187666612870
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE--YLVMPV-GVTTRRPRVD-EKQYIDYRFISQSQFKGW-KHTGLFIETTKVRDEY 77 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~--~~~~~v-~~TTR~~R~~-E~~g~dY~Fvs~~~F~~~-i~~~~FiE~~~~~g~~ 77 (186)
.+|=|+||+|+||+||+.+|...+- +....| ..---.|+.| -+=| ++-.|+.+ ...+-|+-.---.|+.
T Consensus 50 ~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLG------Dr~Rm~~~~~~~~~fiRs~~srg~l 123 (325)
T PRK09435 50 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG------DKTRMERLSRHPNAFIRPSPSSGTL 123 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH------HHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 5997427999868899999999999679858999978999988861010------3888876147998488406778886
Q ss_pred EEEECCCHHH---HHHHCCCCCCCCCCCHHHHH----HHCCCCCEEEEHCCCCCHHHH
Q ss_conf 4544220023---34310242002542000244----420543200000023218999
Q gi|254780132|r 78 YGYLKEDINN---PMEHGYDILLILTHQGLAPL----KKLYEDQVTSIFIAPPSEAEL 128 (186)
Q Consensus 78 YGts~~~i~~---~~~~g~~~il~id~~G~~~l----k~~~~~~~~~IfI~pps~~~L 128 (186)
=|.+...-+. .-..|.++|+. +.-|+-|- .... +.+.+.+.|-+-+++
T Consensus 124 gg~~~~~~~~~~~~~a~g~d~i~i-ETvGvGQ~e~~v~~~~--d~~~~~~~p~~GD~~ 178 (325)
T PRK09435 124 GGVARKTRETMLLCEAAGFDVILV-ETVGVGQSETAVAGMV--DFFLLLQLPGAGDEL 178 (325)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEE-EECCCCHHHHHHHHHC--CEEEEEECCCCCCHH
T ss_conf 773354999999999779998999-7067771488998742--668888358876088
No 439
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.36 E-value=0.033 Score=34.20 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=67.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEE--EE-EEEECCCEEE-E
Q ss_conf 999879999989999999851898179986027888988334642010014554221027818--76-6661287045-4
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF--IE-TTKVRDEYYG-Y 80 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~F--iE-~~~~~g~~YG-t 80 (186)
||++|.||+|||+|+.+++.. .|.-.... | -|.|++--+- .+..|.. +. |-+.....|. .
T Consensus 5 ivllGd~~VGKTsL~~rf~~~--~F~~~~~~-T--------ig~df~~k~i-----~i~dg~~v~l~IwDTaGqe~~~si 68 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEG--RFAEVSDP-T--------VGVDFFSRLI-----EIEPGVRIKLQLWDTAGQERFRSI 68 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHC--CCCCCCCC-C--------CCEEEEEEEE-----EECCCCEEEEEEEECCCCCCCCCC
T ss_conf 999999996199999999819--99998687-2--------0168899899-----977995999999979886345644
Q ss_pred ECCCHHHHHHHCCCCCCCCC-CCHHHHHH-------HCCC-CCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 42200233431024200254-20002444-------2054-320000002321899998762014544899999999865
Q gi|254780132|r 81 LKEDINNPMEHGYDILLILT-HQGLAPLK-------KLYE-DQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFGKN 151 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~id-~~G~~~lk-------~~~~-~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~~~ 151 (186)
....... ..|-++++|++ .+....++ ...+ ..+..|.| -++..|... | ....+-.+.+ +..
T Consensus 69 ~~~yyr~--a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLV--GNK~DL~~~---R--~Vs~ee~~~~-A~~ 138 (211)
T cd04111 69 TRSYYRN--SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILV--GHKCDLESQ---R--QVTREEAEKL-AKD 138 (211)
T ss_pred HHHHHHH--CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE--EECCCHHHH---C--CCCHHHHHHH-HHH
T ss_conf 2877421--2446897147777999999999999999749888538988--742312856---7--8899999999-998
Q ss_pred HCCCEEEE----CCCHHHHHHHH-HHHHHHHHHCCC
Q ss_conf 35988999----39789999999-999999973012
Q gi|254780132|r 152 HSYSFTIV----NNHLPTACRQV-GLIREFVKRGKK 182 (186)
Q Consensus 152 ~~fD~iIi----Nddle~a~~~l-~~Iie~l~~~~~ 182 (186)
+.+.|.=+ |.+++++++.| +.|.+.+++++-
T Consensus 139 ~~~~f~EtSAK~g~nV~e~F~~la~~i~~~~~~~~~ 174 (211)
T cd04111 139 LGMKYIETSARTGDNVEEAFELLTQEIYERIKRGEL 174 (211)
T ss_pred HCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 399799975999819899999999999999873896
No 440
>PRK00454 engB GTPase EngB; Reviewed
Probab=96.36 E-value=0.0024 Score=41.18 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=26.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE-EE-EEECCCC
Q ss_conf 999987999998999999985189817-99-8602788
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLV-MP-VGVTTRR 39 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~-~~-v~~TTR~ 39 (186)
-|+|+|.+-+||+||.++|+.+. .+. .+ .|.|||.
T Consensus 26 ~VaivGrpNvGKSTL~N~L~g~k-~~a~vs~~pgtTr~ 62 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNRK-NLARTSKTPGRTQL 62 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CEEEEECCCCCEEE
T ss_conf 89998489888999999986897-36997478886079
No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0036 Score=40.05 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+||.||||||+.+-++.-.
T Consensus 26 Gei~gllGpNGAGKSTll~~i~Gl~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8399999999871999999997697
No 442
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.33 E-value=0.0038 Score=39.95 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++-|+||.|+||||+++.|+.-.
T Consensus 28 Gei~gllGpNGAGKTTl~~~l~Gl~ 52 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8199999999981999999996795
No 443
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.32 E-value=0.0036 Score=40.03 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|..+.|+||.|||||||++.|+...+
T Consensus 350 Ge~iaivG~NGsGKSTLlk~l~G~~~ 375 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 82478988987758899999838656
No 444
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.31 E-value=0.0039 Score=39.87 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7199998799999899999998
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~ 23 (186)
+++++|+||.|+||+|+++.+.
T Consensus 21 g~~~iItGpN~sGKSt~Lr~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8689998998775799999999
No 445
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.31 E-value=0.0041 Score=39.75 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCC-EEEEEEEECCCEEEE
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210278-187666612870454
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG-LFIETTKVRDEYYGY 80 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~-~FiE~~~~~g~~YGt 80 (186)
+.+++++|+|||||+||+++|....-.. |..-+.++-+.+..-+..+ .|-..... .|. -
T Consensus 443 ~~~iw~tGlsgsGKstiA~~le~~L~~~-----------------g~~~~~LDGd~lR~gl~~dlgf~~~dR~-eni--r 502 (613)
T PRK05506 443 PATVWFTGLSGSGKSTIANLVERRLHAL-----------------GRHTYVLDGDNVRHGLNRDLGFTDADRV-ENI--R 502 (613)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-----------------CCCEEEECCHHHHHHHCCCCCCCHHHHH-HHH--H
T ss_conf 7699997789897479999999999977-----------------9987998808987410457797989999-999--9
Q ss_pred ECCCHHH-HHHHCCCCCCC-CCCCH-H-HHHHHCCC-CCEEEEHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH------
Q ss_conf 4220023-34310242002-54200-0-24442054-3200000023218999987620145448999999998------
Q gi|254780132|r 81 LKEDINN-PMEHGYDILLI-LTHQG-L-APLKKLYE-DQVTSIFIAPPSEAELIQRRIKRREDIPFNLDPDLFG------ 149 (186)
Q Consensus 81 s~~~i~~-~~~~g~~~il~-id~~G-~-~~lk~~~~-~~~~~IfI~pps~~~L~~RL~~R~~e~~~~i~~r~~~------ 149 (186)
-..+|-+ ..++|.+||.- |.|-- . ...|+.++ .+.+-||+.+| .++.++| | ++-+-++-.+
T Consensus 503 R~~eva~l~~~aG~i~i~a~iSp~~~~R~~~r~~~~~~~f~Ev~v~~~-le~c~~R------D-pKglY~kar~gei~~~ 574 (613)
T PRK05506 503 RVAEVARLMADAGLIVLVSFISPFREERELARALIGEGEFVEVFVDTP-LEVCEAR------D-PKGLYAKARAGEIKNF 574 (613)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECC-HHHHHHC------C-CHHHHHHHHCCCCCCC
T ss_conf 999999999868988999758899899999997578887899999089-9999762------9-5567899877997887
Q ss_pred --------HHHCCCEEEEC--CCHHHHHHHHHHHHHHHHH
Q ss_conf --------65359889993--9789999999999999973
Q gi|254780132|r 150 --------KNHSYSFTIVN--NHLPTACRQVGLIREFVKR 179 (186)
Q Consensus 150 --------~~~~fD~iIiN--ddle~a~~~l~~Iie~l~~ 179 (186)
.-..-|.+|.- .++++|+.+| +++|+.
T Consensus 575 tGi~~pYe~P~~p~l~i~t~~~~~~~~~~~i---~~~l~~ 611 (613)
T PRK05506 575 TGIDSPYEAPENPELRLDTDGRSPEELAEQV---LELLRE 611 (613)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHH---HHHHHH
T ss_conf 1368788999998479758999999999999---999986
No 446
>KOG0055 consensus
Probab=96.30 E-value=0.0047 Score=39.38 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|+=+.|+|||||||+|++..| ++
T Consensus 1016 GqTvALVG~SGsGKSTvI~LL-eR 1038 (1228)
T KOG0055 1016 GQTVALVGPSGSGKSTVISLL-ER 1038 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHH-HH
T ss_conf 988999889988799899999-98
No 447
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=96.30 E-value=0.0039 Score=39.86 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=42.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEE
Q ss_conf 7199998799999899999998518981799860278889883346420100145542210278187
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI 68 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~Fi 68 (186)
|.|+|+.|++|||++|+.+.+..+..+|...+ ++ -+.|-=+++++|++.-. |+.+
T Consensus 88 GEl~vVLGrPGaGCsTlLk~ia~~t~gf~~~~--~g---------~i~YdG~~~~ei~k~yr-Gdv~ 142 (1466)
T TIGR00956 88 GELTVVLGRPGAGCSTLLKTIASKTDGFHIGV--EG---------VITYDGITPEEIKKHYR-GDVV 142 (1466)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHEEEEECCC--CC---------EEEECCCCHHHHHCCCC-CCEE
T ss_conf 61799724899735665556532000143157--64---------48746888465411477-2267
No 448
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.26 E-value=0.0021 Score=41.42 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=31.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCHHHCCHHHHH
Q ss_conf 999879999989999999851898179986027888988--3346420100145542
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQFK 59 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~--E~~g~dY~Fvs~~~F~ 59 (186)
+.|+|.+-|||+||.+.|+.+.--+.-.++-|||-+-.. +.+|..|.|++-.-+.
T Consensus 175 iaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGir 231 (429)
T TIGR03594 175 IAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIR 231 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCC
T ss_conf 999748876546777776543332147999863102687999999089999898876
No 449
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=96.26 E-value=0.0036 Score=40.04 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-----EEEEEEECCCCCCCCCCCCCCHH
Q ss_conf 999879999989999999851898-----17998602788898833464201
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEY-----LVMPVGVTTRRPRVDEKQYIDYR 51 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~-----~~~~v~~TTR~~R~~E~~g~dY~ 51 (186)
|+++|=.|||||||+|+|+.+.-. =..++===||...+-=.|-+-||
T Consensus 142 Ilv~GGTGSGKTTLaNAlla~I~~l~~P~dR~vIiEDT~ElQC~A~N~V~lr 193 (315)
T TIGR02782 142 ILVVGGTGSGKTTLANALLAEIAKLNDPDDRVVIIEDTAELQCAAENLVALR 193 (315)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEE
T ss_conf 8998145885799999999988521699961899854713201378706874
No 450
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.25 E-value=0.0038 Score=39.91 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99987999998999999985189
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
||++|++|||||||+++|...+.
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999888899998875036
No 451
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.007 Score=38.31 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=48.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEE-EEEEEECCCEEEEECC
Q ss_conf 999879999989999999851898179986027888988334642010014554221027818-7666612870454422
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLKE 83 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~F-iE~~~~~g~~YGts~~ 83 (186)
|.++||+|||||-|++.|.... +..|++.--|----+|=+ |.| | +.-..++++.-.| +|-++ .|--| .+
T Consensus 100 ILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYV-GED---V-ENillkLlqaadydV~rAe-rGIIy---ID 169 (408)
T COG1219 100 ILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYV-GED---V-ENILLKLLQAADYDVERAE-RGIIY---ID 169 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEECCCCCHHHCCCC-CHH---H-HHHHHHHHHHCCCCHHHHH-CCEEE---EE
T ss_conf 7998889975779999999984-898475144412106635-500---8-9999999987645888882-88599---85
Q ss_pred CHHHHHHHCCCCC--CCCCCCHHHH
Q ss_conf 0023343102420--0254200024
Q gi|254780132|r 84 DINNPMEHGYDIL--LILTHQGLAP 106 (186)
Q Consensus 84 ~i~~~~~~g~~~i--l~id~~G~~~ 106 (186)
+|+++.+..-++- =|+.=+|++|
T Consensus 170 EIDKIarkSen~SITRDVSGEGVQQ 194 (408)
T COG1219 170 EIDKIARKSENPSITRDVSGEGVQQ 194 (408)
T ss_pred CHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 1025420578987234367358999
No 452
>pfam01202 SKI Shikimate kinase.
Probab=96.24 E-value=0.015 Score=36.30 Aligned_cols=56 Identities=7% Similarity=0.056 Sum_probs=31.0
Q ss_pred CEEEEHCCCCCHHHHHHHHHHCCC-------CCHHHHH----HHHHHHHHCCCEEEECC--CHHHHHHHH
Q ss_conf 200000023218999987620145-------4489999----99998653598899939--789999999
Q gi|254780132|r 114 QVTSIFIAPPSEAELIQRRIKRRE-------DIPFNLD----PDLFGKNHSYSFTIVNN--HLPTACRQV 170 (186)
Q Consensus 114 ~~~~IfI~pps~~~L~~RL~~R~~-------e~~~~i~----~r~~~~~~~fD~iIiNd--dle~a~~~l 170 (186)
...+||+.. +.+.+.+|+..+.. +....+. .|..-+...-|++|..+ +.++.++++
T Consensus 85 ~g~vi~L~~-~~~~i~~Rl~~~~~RPll~~~~~~~~~~~l~~~R~~~Y~~~a~~~i~~~~~~~~ei~~~I 153 (158)
T pfam01202 85 NGIVVYLDA-DPEVLLERLKADKTRPLLQDKDPEEELLELLFERCPLYEEAADIVVDTDESSPEEVAEEI 153 (158)
T ss_pred CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 792799849-999999997179999989899879999999999999999869999879999999999999
No 453
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0045 Score=39.46 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCC
Q ss_conf 719999879999989999999851-898
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEY 28 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~ 28 (186)
|.++.|.||.||||||+++.|+.- .|.
T Consensus 31 Gei~gllGpNGAGKTTli~~l~Gl~~p~ 58 (304)
T PRK13537 31 GECFGLLGPNGAGKTTTLKMLLGLTHPD 58 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 9599999998972999999997795689
No 454
>PRK04213 GTP-binding protein; Provisional
Probab=96.23 E-value=0.0027 Score=40.79 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=27.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 9999879999989999999851898179986027888
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRP 40 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~ 40 (186)
.++|+|-|-||||||.++|+.+... .-..|-|||-+
T Consensus 3 ~VaivGRpNVGKSTL~N~L~g~k~~-vs~~pg~Tr~~ 38 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALTGKKVR-VGKRPGVTLKP 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEE
T ss_conf 7999769998899999999689851-34899648734
No 455
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.22 E-value=0.00066 Score=44.51 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=37.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 9999879999989999999851898179986027888988334642010
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRF 52 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~F 52 (186)
+++|+|.+-+||+||.++|+.+..-+.-..+-|||-...+...-.++.|
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~ 49 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGGREF 49 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCEEE
T ss_conf 9899999998789999998788617615989988773379999999079
No 456
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.21 E-value=0.0047 Score=39.35 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++-|.||.||||||+++-|+.-.
T Consensus 33 Gei~gllGpNGAGKSTli~~l~Gl~ 57 (306)
T PRK13536 33 GECFGLLGPNGAGKSTIARMILGMT 57 (306)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9699999998980999999996795
No 457
>COG0645 Predicted kinase [General function prediction only]
Probab=96.20 E-value=0.075 Score=32.08 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CC----CCCCHHHCCHHHHHHHHCCCEEEEEEEECC
Q ss_conf 719999879999989999999851898179986027888988--33----464201001455422102781876666128
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVD--EK----QYIDYRFISQSQFKGWKHTGLFIETTKVRD 75 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~--E~----~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g 75 (186)
+.++++.|-||+||+|++..|-+..+-..+. |=.-|++=-| +. .|.-+-=++...| .
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lr-sD~irk~L~g~p~~~r~~~g~ys~~~~~~vy----------------~ 63 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLR-SDVIRKRLFGVPEETRGPAGLYSPAATAAVY----------------D 63 (170)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEE-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH----------------H
T ss_conf 9479972588865868878988534866874-1789987238861014887887678899999----------------9
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCCCH--HH----HHHHCCCCCEEEEHCCCCCHHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf 7045442200233431024200254200--02----4442054320000002321899998762014544---8999999
Q gi|254780132|r 76 EYYGYLKEDINNPMEHGYDILLILTHQG--LA----PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDI---PFNLDPD 146 (186)
Q Consensus 76 ~~YGts~~~i~~~~~~g~~~il~id~~G--~~----~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~e~---~~~i~~r 146 (186)
..|+ --...+..|..+++|-..-- -+ ++-+..+..+..|....| .+++..|+..|..+. ...+-+.
T Consensus 64 ~l~~----~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~rl~aR~~d~sDA~~~il~~ 138 (170)
T COG0645 64 ELLG----RAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRGRLAARKGDASDATFDILRV 138 (170)
T ss_pred HHHH----HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 9998----8999996799189844337888899999987503885488875882-9999989998179965132899999
Q ss_pred HHHHHH---CCCEEEEC
Q ss_conf 998653---59889993
Q gi|254780132|r 147 LFGKNH---SYSFTIVN 160 (186)
Q Consensus 147 ~~~~~~---~fD~iIiN 160 (186)
...... +++...++
T Consensus 139 q~~~~~~~~~~~~~~~~ 155 (170)
T COG0645 139 QLAEDEPWTEWETADTD 155 (170)
T ss_pred HHHHHCCCCCCCCHHHC
T ss_conf 98630785343102221
No 458
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.20 E-value=0.0053 Score=39.04 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99987999998999999985189
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
++|.||+|+|||++++.+++...
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~ 23 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG 23 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98789999999999999999978
No 459
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.19 E-value=0.0047 Score=39.36 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 19999879999989999999851
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
+.|+|.|++|+||||++++++..
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~ 23 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALL 23 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98999827989899999999999
No 460
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=96.19 E-value=0.0036 Score=40.03 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.0
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99879999989999999851898179
Q gi|254780132|r 6 VLIGASGVGKTTIAKQVVLNSEYLVM 31 (186)
Q Consensus 6 vi~GpsGsGK~tl~~~L~~~~~~~~~ 31 (186)
.|.||||||||||++-|+.+..++.-
T Consensus 520 ~IfG~~G~GKTtLl~fL~a~~~ky~~ 545 (931)
T TIGR00929 520 LIFGPTGSGKTTLLNFLLAQLQKYKP 545 (931)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 78888898469999999999742488
No 461
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.19 E-value=0.0044 Score=39.54 Aligned_cols=21 Identities=38% Similarity=0.735 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999879999989999999851
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~ 25 (186)
|.++||||+|||.+++.|.+.
T Consensus 601 FLFlGPTGVGKTElAK~LA~~ 621 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 998689878889999999999
No 462
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.005 Score=39.20 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.-.|+.||||+||+||++.|-.+|
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 5079966898876889999998514
No 463
>PRK08181 transposase; Validated
Probab=96.19 E-value=0.0031 Score=40.42 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 19999879999989999999851898179986027
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
.=++++||||+|||.|+..|..+--.-++.|.|+|
T Consensus 107 ~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 70899899998788999999999998799399978
No 464
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.018 Score=35.76 Aligned_cols=24 Identities=33% Similarity=0.691 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
.+-++++||.|+||.+++..+.+.
T Consensus 22 ~HA~Lf~G~~G~GK~~lA~~~A~~ 45 (328)
T PRK05707 22 AHAYLLHGPAGIGKRALAERLAAF 45 (328)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 204644799986799999999999
No 465
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.17 E-value=0.0017 Score=41.97 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=28.7
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 98799999899999998518981799860278889883
Q gi|254780132|r 7 LIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDE 44 (186)
Q Consensus 7 i~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E 44 (186)
|+|++-||||||.+.|+...+... ..+.|||-|-.|-
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v~-~~pgTTr~~~~g~ 37 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA-NYPFTTLEPNLGV 37 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEE-CCCCCEEEEEEEE
T ss_conf 969998889999999968996030-7899676124679
No 466
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.17 E-value=0.0046 Score=39.42 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879999989999999851
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~ 25 (186)
-|.++||||+|||.|++.|.+.
T Consensus 541 sFlf~GPTGvGKTElAK~LA~~ 562 (823)
T CHL00095 541 SFIFCGPTGVGKTELTKALASY 562 (823)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8998789988779999999999
No 467
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.17 E-value=0.003 Score=40.58 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 9998799999899999998518981799860278
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTR 38 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR 38 (186)
+.++|.+++||+||++.|..+.--.....|.|||
T Consensus 104 v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr 137 (156)
T cd01859 104 VGVVGYPNVGKSSIINALKGRHSASTSPSPGYTK 137 (156)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEC
T ss_conf 9998147845989999974881377759998070
No 468
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.16 E-value=0.0052 Score=39.09 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1999987999998999999985189
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
+.+.|.||+|+|||.|++.++....
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8699989999988999999999986
No 469
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.15 E-value=0.005 Score=39.20 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97199998799999899999998
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVV 23 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~ 23 (186)
+|.+.+|+|.|||||+||+...+
T Consensus 634 lg~lt~VtGvSGSGKStLi~~~l 656 (944)
T PRK00349 634 LGKFTCVTGVSGSGKSTLINETL 656 (944)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89668996147886379999999
No 470
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.14 E-value=0.0078 Score=38.03 Aligned_cols=26 Identities=42% Similarity=0.625 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++-|+||||||||||++.|+.-.+
T Consensus 310 GEi~gi~G~nGsGKsTL~k~l~Gl~~ 335 (520)
T TIGR03269 310 GEIFGIVGTSGAGKTTLSKIIAGVLE 335 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 96899987888878999999948878
No 471
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0046 Score=39.39 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879999989999999851
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~ 25 (186)
.|.++||||+|||.|++.|.+.
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~ 544 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEA 544 (786)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7886678865699999999999
No 472
>PRK06526 transposase; Provisional
Probab=96.13 E-value=0.0031 Score=40.46 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 19999879999989999999851898179986027
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
+=++++||||+|||.|+..|..+--.-.+.|.|+|
T Consensus 99 ~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~ 133 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87899899998689999999999998699679987
No 473
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0053 Score=39.05 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 719999879999989999999851
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|..++|.||+|||||||.+.|..-
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 989999889998899999995376
No 474
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.12 E-value=0.0049 Score=39.25 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879999989999999851
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~ 25 (186)
.|.++||||+|||.+++.|.+.
T Consensus 597 sFlf~GptGvGKTELAKaLAe~ 618 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8998678877689999999999
No 475
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.12 E-value=0.0082 Score=37.90 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=58.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 999987999998999999985189817998602788898--833464201001455422102781876666128704544
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRV--DEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~--~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
=|.|+|-+-+||+||++.|+.+.--+.-.++-|||-+=. -+.+|..|.||+-.-..+.-+...=+| +|.+.
T Consensus 454 rIAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDsId~~~~~~g~~~~lIDTAGiRkk~k~~~~iE-------~~S~~ 526 (714)
T PRK09518 454 RVALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDPVDEIVNIDGKDWLFVDTAGIRRKQKKLTGAE-------YYASL 526 (714)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEEECCEEEEEEECHHCCCCCCCCCCCC-------HHHHH
T ss_conf 58886699887899999996897588568898502305567999997899998600152443254322-------79999
Q ss_pred CCCHHHHHHHCCCCCCCCCCC
Q ss_conf 220023343102420025420
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQ 102 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~ 102 (186)
+ ++ ++++.-.+|+|.+|..
T Consensus 527 r-t~-~aI~~adVvllviDA~ 545 (714)
T PRK09518 527 R-TQ-AAIERCELALILFDAS 545 (714)
T ss_pred H-HH-HHHHHCCEEEEEEECC
T ss_conf 9-99-9886588999998677
No 476
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.10 E-value=0.024 Score=35.12 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=57.5
Q ss_pred EEEEECCCCCCHHHHHHH---HHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHH--------------------HHHH
Q ss_conf 999987999998999999---98518981799860278889883346420100145--------------------5422
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQ---VVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQS--------------------QFKG 60 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~---L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~--------------------~F~~ 60 (186)
||-++||.|+||+|++.. |+++-+....+.-.|| ||-+|.=.--+ +|-.
T Consensus 84 IIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpm--------DGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~ 155 (283)
T COG1072 84 IIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM--------DGFHYPNAVLDERGLMARKGFPESYDVAALLRFLS 155 (283)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC--------CCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9996057665577899999999963889873378714--------54546767752212200189985356899999999
Q ss_pred HHCCCEE-EEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHC----C--CCCEEEEHCCCCCHHHHHHHHH
Q ss_conf 1027818-7666612870454422002334310242002542000244420----5--4320000002321899998762
Q gi|254780132|r 61 WKHTGLF-IETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKL----Y--EDQVTSIFIAPPSEAELIQRRI 133 (186)
Q Consensus 61 ~i~~~~F-iE~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~----~--~~~~~~IfI~pps~~~L~~RL~ 133 (186)
.+++|.= +.+=.|.--.|-.--++ ..+..+-.++|+ +|..=|... + ++--++|||.++ .+.+++|++
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vp~~-~~v~~~pdIlI~----EG~nvLq~~~p~~~~sdffDfSIyvDa~-~~~le~wyi 229 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDA-FQVVPQPDILIV----EGNNVLQDGEPWLFLSDFFDFSIYVDAD-EELLEERYI 229 (283)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCC-EEECCCCCEEEE----ECHHHHCCCCCCCCCCCCCEEEEEECCC-HHHHHHHHH
T ss_conf 9965998512432331102567885-020589988999----1526625898511125622179993699-999999999
Q ss_pred HCC
Q ss_conf 014
Q gi|254780132|r 134 KRR 136 (186)
Q Consensus 134 ~R~ 136 (186)
+|-
T Consensus 230 ~Rf 232 (283)
T COG1072 230 ERF 232 (283)
T ss_pred HHH
T ss_conf 999
No 477
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=96.10 E-value=0.0058 Score=38.82 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 199998799999899999998518981799860278
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTR 38 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR 38 (186)
.-|+|+||+|||||+|...|... .. ..++||=
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~~~--~~--~~T~tS~ 35 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLTTG--SV--RKTVTSQ 35 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC--CC--CCEECCC
T ss_conf 86999868999899999999759--94--8758886
No 478
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.0098 Score=37.42 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=38.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC-CCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCE-EE
Q ss_conf 719999879999989999999851898179986027888-9883346420100145542210278187666612870-45
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRP-RVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEY-YG 79 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~-R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~-YG 79 (186)
|..+|+.||||+||+||.+-+..-.+--.-++.---|+. -||-..|+ | | ++...+-|-.+-+|- ||
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergv----V----F----Q~~~LlPWl~~~dNvafg 98 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV----V----F----QNEALLPWLNVIDNVAFG 98 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCEE----E----E----CCCCCCHHHHHHHHHHHH
T ss_conf 978999768886578899998627585666488899865688743234----7----3----267633046778888877
Q ss_pred EECCCHHH
Q ss_conf 44220023
Q gi|254780132|r 80 YLKEDINN 87 (186)
Q Consensus 80 ts~~~i~~ 87 (186)
.....|.+
T Consensus 99 L~l~Gi~k 106 (259)
T COG4525 99 LQLRGIEK 106 (259)
T ss_pred HHHCCCCH
T ss_conf 77648878
No 479
>PRK13764 ATPase; Provisional
Probab=96.06 E-value=0.0058 Score=38.80 Aligned_cols=67 Identities=24% Similarity=0.226 Sum_probs=40.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CC--------------CHHHCCHH---HHHHHHCCC
Q ss_conf 9999879999989999999851898179986027888988334-64--------------20100145---542210278
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ-YI--------------DYRFISQS---QFKGWKHTG 65 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~-g~--------------dY~Fvs~~---~F~~~i~~~ 65 (186)
=|.|+||+|+||+|+++.|.+.+.....+| -|--.||.=-+. .+ |--++++- -|.+|.+..
T Consensus 261 GilIaG~PGaGKsTfaqalA~~~~~~g~iV-KTmEsPRDl~v~~~iTQy~~l~g~~e~t~diLlLvRPDytifDE~R~~~ 339 (605)
T PRK13764 261 GILIAGAPGAGKSTFAQALAEFYADMGKIV-KTMESPRDLQVPPEITQYTPLEGSMEETADILLLVRPDYTIFDEMRKTE 339 (605)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE-EECCCCCCCCCCCCCCEECCCCCCHHHHEEEEEEECCCCEEEEEHHCCC
T ss_conf 499977999977899999999998479789-8324862366895420524356887773006788548826640020433
Q ss_pred EEEEEE
Q ss_conf 187666
Q gi|254780132|r 66 LFIETT 71 (186)
Q Consensus 66 ~FiE~~ 71 (186)
.|--++
T Consensus 340 Df~ifa 345 (605)
T PRK13764 340 DFEVFA 345 (605)
T ss_pred CCCCEE
T ss_conf 300001
No 480
>PRK05416 hypothetical protein; Provisional
Probab=96.05 E-value=0.0089 Score=37.66 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=62.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 71999987999998999999985189817998602788898833464201001455422102781876666128704544
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
-+++||+|.|||||+|-++.| +.. +|.. | |+.---.+ ..|-++.....-. . .-...
T Consensus 6 m~lviVTGlSGAGKStAl~~L-EDl-Gy~c-i------------DNlP~~Ll--~~l~~~~~~~~~~-----~--~lAv~ 61 (292)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL-EDL-GYYC-V------------DNLPPSLL--PKLVELLAQSGGI-----D--KVAVV 61 (292)
T ss_pred EEEEEEECCCCCCHHHHHHHH-HHC-CCEE-E------------CCCCHHHH--HHHHHHHHCCCCC-----C--CEEEE
T ss_conf 689999689978799999999-817-9447-8------------68888999--9999997247887-----7--06999
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH--CC-----C--CCHHHHH--HHHHH-
Q ss_conf 22002334310242002542000244420543200000023218999987620--14-----5--4489999--99998-
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK--RR-----E--DIPFNLD--PDLFG- 149 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~--R~-----~--e~~~~i~--~r~~~- 149 (186)
.+ + ..+. -.-++ ......|++. +..+..||+.+ +.++|.+|-.. |. . ...+.|+ +.+++
T Consensus 62 iD-~----R~~~-~~~~l-~~~~~~l~~~-~~~~~ilFLdA-~~~~LlrRy~eTRR~HPL~~~~~~L~eaI~~Er~~L~~ 132 (292)
T PRK05416 62 ID-V----RSRP-FFLDL-PEALDELRER-GIDVRVLFLDA-SDEVLIRRYSETRRRHPLSGDGGSLLEAIELERELLAP 132 (292)
T ss_pred EE-C----CCCC-CHHHH-HHHHHHHHHC-CCCEEEEEEEC-CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 82-4----6654-47789-9999999857-99559999978-86999998875068999888999989999999999999
Q ss_pred HHHCCCEEEECCCHHHHHHHHHH
Q ss_conf 65359889993978999999999
Q gi|254780132|r 150 KNHSYSFTIVNNHLPTACRQVGL 172 (186)
Q Consensus 150 ~~~~fD~iIiNddle~a~~~l~~ 172 (186)
-....|++|.--++ ...+|+.
T Consensus 133 ir~~Ad~vIDTS~l--~~~~Lr~ 153 (292)
T PRK05416 133 LRERADLVIDTSEL--SVHQLRE 153 (292)
T ss_pred HHHHCCEEEECCCC--CHHHHHH
T ss_conf 99740289747999--9999999
No 481
>PRK12377 putative replication protein; Provisional
Probab=96.04 E-value=0.0041 Score=39.71 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 9999879999989999999851898179986027
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
=+|++||+|+|||.|+-.+..+--.-..+|.++|
T Consensus 103 NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t 136 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 0899899998788999999999998799699988
No 482
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.04 E-value=0.0048 Score=39.29 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 199998799999899999998518
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
++|.++||+|+||||-+.+|..++
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~ 25 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYL 25 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999998899999999999
No 483
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0077 Score=38.05 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 7199998799999899999998518981799
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMP 32 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~ 32 (186)
.+=|+++||+|+|||.|+++|..-. +..|+
T Consensus 50 pkNILmIGPTGvGKTeIARrLAkl~-~aPFv 79 (442)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFI 79 (442)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEE
T ss_conf 4316887888866789999999984-89858
No 484
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.015 Score=36.39 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
|.++.|+|+|||||+|+++.|+.-.
T Consensus 350 GE~l~lvG~sGsGKSTl~r~l~gl~ 374 (623)
T PRK10261 350 GETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9589997678766899999985664
No 485
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.01 E-value=0.0068 Score=38.38 Aligned_cols=18 Identities=44% Similarity=0.770 Sum_probs=15.2
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 719999879999989999
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIA 19 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~ 19 (186)
++++|++|+|||||++|+
T Consensus 26 ~~lvViTGvSGSGKSSLA 43 (1809)
T PRK00635 26 REIVLLTGVSGSGKSSLA 43 (1809)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 988999799889789999
No 486
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.00 E-value=0.0062 Score=38.65 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879999989999999851
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~ 25 (186)
-|.++||||+|||.|++.|.+.
T Consensus 598 sFLFlGPTGVGKTElAK~LA~~ 619 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8998789987789999999999
No 487
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.00 E-value=0.0051 Score=39.13 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 99998799999899999998518981799860278889
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPR 41 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R 41 (186)
-|+|+||||||||+|...|... .. .-+||+=.|.
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~--~~--~~T~tS~~~n 35 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG--KY--RSTVTSIEPN 35 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--CC--CCCCCCCCCC
T ss_conf 5999907999899999999749--98--8877888786
No 488
>PRK13409 putative ATPase RIL; Provisional
Probab=96.00 E-value=0.0066 Score=38.47 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=17.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEE
Q ss_conf 719999879999989999999851-89817
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLN-SEYLV 30 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~-~~~~~ 30 (186)
|+++=|+||-|+||||+++-|... .|+..
T Consensus 99 G~v~GLiG~NGaGKST~lkILsG~l~Pn~G 128 (590)
T PRK13409 99 GKVTGILGPNGIGKSTAVKILSGELIPNLG 128 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 878998899999899999999587148889
No 489
>PRK01156 chromosome segregation protein; Provisional
Probab=95.99 E-value=0.006 Score=38.72 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1999987999998999999985
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVL 24 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~ 24 (186)
-+++|+||-|||||||..+++=
T Consensus 24 Gi~~I~G~NGaGKStIldAI~~ 45 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIRF 45 (895)
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 9278889999987899999999
No 490
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0078 Score=38.01 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.=+.|+|||||||+|+.+-|+..++
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 87688877999878999999972358
No 491
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.98 E-value=0.007 Score=38.30 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
|.++.|+||+||||+||++.|+.-.+
T Consensus 288 GEi~gi~G~nGsGKsTLl~~L~Gl~~ 313 (513)
T PRK13549 288 GEILGIAGLVGAGRTELVQCLFGAYP 313 (513)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 84899747988658999999838988
No 492
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.97 E-value=0.006 Score=38.71 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
++=|+++|+.||||||+++.|+...|
T Consensus 144 r~nilVsGgTGSGKTTllnaL~~~i~ 169 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89689991777756899999998640
No 493
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.97 E-value=0.0064 Score=38.55 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998799999899999998518
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~ 26 (186)
-|+++||+|||||||+.+|....
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999998899999996476
No 494
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=95.97 E-value=0.0097 Score=37.44 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=64.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEEC
Q ss_conf 19999879999989999999851898179986027888988334642010014554221027818766661287045442
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~ 82 (186)
+++||+|.|||||+|-++.| +.. +|. +| |+.--..+ .+|-++.....- ... .-.+..
T Consensus 2 ~lviVTGlSGAGKStAl~~L-ED~-Gy~-cv------------DNlP~~Ll--~~~~~~~~~~~~----~~~--~lAi~i 58 (284)
T pfam03668 2 DLVIITGRSGAGKSVALRAL-EDL-GYY-CV------------DNLPPQLL--PRLVDFLLAAGS----RIS--SVAVVM 58 (284)
T ss_pred EEEEEECCCCCCHHHHHHHH-HCC-CCE-EE------------CCCCHHHH--HHHHHHHHHCCC----CCC--EEEEEE
T ss_conf 69999579977799999999-818-924-77------------58899999--999999862478----765--268999
Q ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH--CC------CCCHHHHH--HHHH-HHH
Q ss_conf 2002334310242002542000244420543200000023218999987620--14------54489999--9999-865
Q gi|254780132|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK--RR------EDIPFNLD--PDLF-GKN 151 (186)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~--R~------~e~~~~i~--~r~~-~~~ 151 (186)
+ +.. + ...-++ ++-...+++. +..+..||+.+ +.++|.+|-.. |. ....+.|+ +.++ .-.
T Consensus 59 D-~R~----~-~~~~~~-~~~~~~l~~~-~~~~~ilFLdA-~~~~LirRy~eTRR~HPL~~~~~~leaI~~Er~~L~~lr 129 (284)
T pfam03668 59 D-VRN----R-PFSGDL-DEQRNELATR-AITPRILFLEA-DDDTLVRRYSDTRRSHPLSGKQLSLEGIAAERRLLEPLR 129 (284)
T ss_pred E-CCC----C-CCHHHH-HHHHHHHHHC-CCCCEEEEEEC-CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6-366----5-333769-9999999866-99826999978-808999988873688998888986999999999999999
Q ss_pred HCCCEEEECCCHHHHHHHHHHHH-HHHH
Q ss_conf 35988999397899999999999-9997
Q gi|254780132|r 152 HSYSFTIVNNHLPTACRQVGLIR-EFVK 178 (186)
Q Consensus 152 ~~fD~iIiNddle~a~~~l~~Ii-e~l~ 178 (186)
...|.+|.--++ ...+|+..+ +.+.
T Consensus 130 ~~Ad~vIDTS~l--~~~~Lr~~i~~~~~ 155 (284)
T pfam03668 130 ARADLIIDTSTL--SVHGLRESIRRAFG 155 (284)
T ss_pred HHCCEEEECCCC--CHHHHHHHHHHHHC
T ss_conf 626599856899--99999999999864
No 495
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=95.96 E-value=0.0048 Score=39.29 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 719999879999989999999851898179986027
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TT 37 (186)
++=+++.||+|+|||.|+..+..+--.-.+.+.|+|
T Consensus 47 ~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~ 82 (178)
T pfam01695 47 AENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTR 82 (178)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 876899899998789999999999998698599996
No 496
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=95.95 E-value=0.0034 Score=40.21 Aligned_cols=87 Identities=25% Similarity=0.375 Sum_probs=46.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE--EEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 999987999998999999985189817--998602788898833464201001455422102781876666128704544
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLV--MPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~--~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
=++++|++|+|||||.++|....-..+ -+|-|-. +.-+| |+ |+|+||-. ||--.
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~~~~YKKTQAvE~~~-------k~~ID----TP---------GEY~enr~----~Y~AL 57 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIKYKKTQAVEYKD-------KEAID----TP---------GEYVENRR----YYSAL 57 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCCEEEEEEEEECC-------CCCCC----CC---------CCCCCCCC----HHHHH
T ss_conf 178871588874435431168732102334454258-------88655----98---------50015752----37888
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCC
Q ss_conf 2200233431024200254200024442054320000002
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIA 121 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~ 121 (186)
. -.+.+.. ++++ ++++..=...++-....+|..
T Consensus 58 ~---vtaaDAd-~i~l---V~~a~~~~~~f~PgF~~~f~k 90 (144)
T TIGR02528 58 I---VTAADAD-VIAL---VQSATDEESRFSPGFASIFVK 90 (144)
T ss_pred H---HHHHCCE-EEEE---EECCCCCCCCCCCCCCCCCCC
T ss_conf 8---8872102-3667---735776422378500023678
No 497
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.94 E-value=0.0068 Score=38.38 Aligned_cols=22 Identities=45% Similarity=0.770 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879999989999999851
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~ 25 (186)
+|.++||.||||||-+.+|...
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999889999999999
No 498
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.93 E-value=0.0075 Score=38.12 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9719999879999989999999851
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
|++-+||.||||+|||-|+++|...
T Consensus 193 tKknvIL~G~pGtGKT~lAk~lA~~ 217 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 5882796589998878999999999
No 499
>pfam00931 NB-ARC NB-ARC domain.
Probab=95.92 E-value=0.0072 Score=38.23 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 19999879999989999999851
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLN 25 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~ 25 (186)
++|-|+|++|+|||||++.+...
T Consensus 20 ~vI~I~G~gGiGKTtLA~~v~~~ 42 (285)
T pfam00931 20 GVVGIVGMGGVGKTTLAKQIYND 42 (285)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 39998899956399999999716
No 500
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.90 E-value=0.0095 Score=37.50 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=29.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCCC-------CCCHHHCC
Q ss_conf 999879999989999999851898179986027888--988334-------64201001
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRP--RVDEKQ-------YIDYRFIS 54 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~--R~~E~~-------g~dY~Fvs 54 (186)
+.|.||+|.|||||+.-+.+... ..+.-|+=|. ||++.= -.|=.||+
T Consensus 33 ~LL~GPPGLGKTTLA~IiA~Emg---~~l~iTsGP~L~kPgDlaaiLt~L~~gDVLFID 88 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALEKPGDLAAILTNLEEGDVLFID 88 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHCCCCCEEECC
T ss_conf 66317568746789999999838---932674067554757899999705689631012
Done!