HHsearch alignment for GI: 254780132 and conserved domain: pfam00437
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.03 E-value=0.00068 Score=44.43 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=56.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEE
Q ss_conf 719999879999989999999851898-1799860278889883346420100145542210278187666612870454
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~-~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGt 80 (186)
T Consensus 139 ~~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiE--D~~El~l~~~~----------------~-v~l~~~~~~~--t 197 (283)
T pfam00437 139 RGNILVSGGTGSGKTTLLYALLNEINTDDERIVTIE--DPVEIQLEGPN----------------Q-VQLNTRLAGV--T 197 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC--CCCEECCCCCC----------------E-EEEEECCCCC--C
T ss_conf 975999889999889999999984087776278733--78523179887----------------8-9998558876--9
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCE---EEEHCCCCCHHHHHHHHHHCCCCC
Q ss_conf 422002334310242002542000244---42054320---000002321899998762014544
Q gi|254780132|r 81 LKEDINNPMEHGYDILLILTHQGLAPL---KKLYEDQV---TSIFIAPPSEAELIQRRIKRREDI 139 (186)
Q Consensus 81 s~~~i~~~~~~g~~~il~id~~G~~~l---k~~~~~~~---~~IfI~pps~~~L~~RL~~R~~e~ 139 (186)
T Consensus 198 ~~~ll~~~LR~~PD~IivGEiR~~Ea~~~l~a~~TGH~g~ltTi--HA~sa~~ai~RL~~lg~~~ 260 (283)
T pfam00437 198 FADLLRAALRQRPDRIMVGEIRDGETADILRAANTGHPGSLSTL--HANSAAGALTRLEQLGMEL 260 (283)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCCC
T ss_conf 99999996388999897578699899999999975998407857--1499899999999856436