HHsearch alignment for GI: 254780132 and conserved domain: pfam00485

>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=98.35  E-value=1.1e-06  Score=61.44  Aligned_cols=133  Identities=21%  Similarity=0.183  Sum_probs=65.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEEE--E-E----EECC-C---CC--CC-CCCCCCCHHHCCHHHH--------HHH
Q ss_conf             9999879999989999999851898179--9-8----6027-8---88--98-8334642010014554--------221
Q gi|254780132|r    4 IFVLIGASGVGKTTIAKQVVLNSEYLVM--P-V----GVTT-R---RP--RV-DEKQYIDYRFISQSQF--------KGW   61 (186)
Q Consensus         4 iivi~GpsGsGK~tl~~~L~~~~~~~~~--~-v----~~TT-R---~~--R~-~E~~g~dY~Fvs~~~F--------~~~   61 (186)
T Consensus         1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~   80 (196)
T pfam00485         1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE   80 (196)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             98998998571999999999996605877641243179860410244375767651457889789662359999999999


Q ss_pred             HCCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHH-----HHHCCCCCEEEEHCCCCCHHHHHHHHH---
Q ss_conf             027818766661287045442200233431024200254200024-----442054320000002321899998762---
Q gi|254780132|r   62 KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI---  133 (186)
Q Consensus        62 i~~~~FiE~~~~~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~---  133 (186)
T Consensus        81 Lk~g~~i~~P~Yd-f~~~~r~~~-~~~i~p~~viIv----EGi~~l~~~~ir~l~D---~kIfid~~~d~rl~RRi~RD~  151 (196)
T pfam00485        81 LKEGGSGDKPIYN-HVTGEADPW-PELIEGADILFI----EGLHGLYDERVAQLLD---LKIYVDPDIDLELIQKIQRDM  151 (196)
T ss_pred             HHCCCCEEEEEEE-CCCCCCCCC-CEECCCCCEEEE----ECHHHCCCHHHHHHHC---EEEEEECCCCHHHHHHHHHCH
T ss_conf             7089945765675-134533677-366178856999----4333303277887638---479972680199999987345


Q ss_pred             -HCCCCCHHHHHH
Q ss_conf             -014544899999
Q gi|254780132|r  134 -KRREDIPFNLDP  145 (186)
Q Consensus       134 -~R~~e~~~~i~~  145 (186)
T Consensus       152 ~eRgrs~~~v~~q  164 (196)
T pfam00485       152 AERGHSLEGVTDS  164 (196)
T ss_pred             HHHCCCHHHHHHH
T ss_conf             7519999999999