BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (186 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 186

 Score =  387 bits (995), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60
           MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG
Sbjct: 1   MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60

Query: 61  WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120
           WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI
Sbjct: 61  WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120

Query: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180
           APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG
Sbjct: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180

Query: 181 KKANYD 186
           KKANYD
Sbjct: 181 KKANYD 186


>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 185

 Score =  366 bits (939), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/181 (96%), Positives = 178/181 (98%)

Query: 1   MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60
           MAHIFVLIGASGVG+TTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG
Sbjct: 1   MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60

Query: 61  WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120
           WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI
Sbjct: 61  WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120

Query: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180
           APPSEAELIQRRIKRRED PFNLDPDLFGKNHSYSFTIVNNHLPTACRQVG IREFVK+ 
Sbjct: 121 APPSEAELIQRRIKRREDTPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGFIREFVKQH 180

Query: 181 K 181
           +
Sbjct: 181 R 181


>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score = 82.0 bits (201), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%)

Query: 4   IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63
           + ++   SGVGK+TIA+ ++   +   M + VTTR  R +E    DY F+S S+F   K 
Sbjct: 17  MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76

Query: 64  TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123
              FIE  +V   +YG L++ I   +  G D+L  +  QG   L K     V S FI PP
Sbjct: 77  ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136

Query: 124 SEAELIQR 131
           +  EL  R
Sbjct: 137 TMQELCSR 144


>gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 129

 Score = 26.9 bits (58), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 67  FIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEA 126
           F+ET +    Y+      + + + + + + L+LT QGL PL       V+S+        
Sbjct: 64  FLETVRYGVMYF------MLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYI 117

Query: 127 ELIQRRI 133
             + RR+
Sbjct: 118 RFMTRRV 124


>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 321

 Score = 26.9 bits (58), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 3   HIFVLIGASGVGKTTI----AKQVVLNSEYLVMPVGVTTRRPRVDE 44
           H+ +++G +GVGKTT+    +K++      +++  G T R   +D+
Sbjct: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 26.6 bits (57), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 11/14 (78%), Positives = 13/14 (92%)

Query: 7   LIGASGVGKTTIAK 20
           LIG SGVGK+T+AK
Sbjct: 388 LIGESGVGKSTVAK 401


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 26.2 bits (56), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 5   FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----SQFK 59
           +V  G +GVGKT I+KQ       L   +GV  +  R D  +Y++   +S+       + 
Sbjct: 510 YVFSGPTGVGKTEISKQ-------LAFALGV--QLLRFDMSEYMERHAVSRLIGAPPGYV 560

Query: 60  GWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL 104
           G+   G+  ++   ++ Y   L ++I        +ILL +   G+
Sbjct: 561 GFGQGGILADSVD-QNPYSVVLLDEIEKSHPDVLNILLQIMDYGI 604


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 25.8 bits (55), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 5   FVLIGASGVGKTTIAK---QVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----S 56
           F+ +G +GVGKT + K   +++ + E  ++         R+D  +Y++   +S+      
Sbjct: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMI---------RIDMSEYMEKHSVSRLIGSPP 651

Query: 57  QFKGWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQG 103
            + G++  G   E  + R  Y   L ++I       ++ILL +   G
Sbjct: 652 GYVGYEEGGALTEAVR-RHPYQVVLFDEIEKAHSDVHNILLQVLDDG 697



 Score = 22.3 bits (46), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 6   VLIGASGVGKTTI 18
           VLIG  GVGKT I
Sbjct: 203 VLIGDPGVGKTAI 215


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component
          of ABC transporter protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 240

 Score = 25.4 bits (54), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 4  IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRV 42
          I  LIG +G GK+TIAK +      ++ P +G   R P++
Sbjct: 38 IVTLIGPNGSGKSTIAKLIT----GIIKPTIGSVKRHPQL 73


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 25.0 bits (53), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)

Query: 2  AHIFVLIGASGVGKTTIAKQV-----VLNSEYLV 30
            I VL+G SG GK+T+ + +     V+  E LV
Sbjct: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 25.0 bits (53), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 3   HIFVLIGASGVGKTTIAKQV----------VLNSEYLVMPVGVTTRRPR 41
           H  +L+G  G GKT +A+ V          +  S+++ + VGV   R R
Sbjct: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVR 230


>537021.9.peg.472_1 
          Length = 369

 Score = 24.6 bits (52), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 1  MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37
          +A  ++L G  G+GKTT A+ +  +  Y    + V T
Sbjct: 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 24.3 bits (51), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 4   IFVLIGASGVGKTTIAKQVVLNS--EYLVMPVG 34
           I   +G  GVGKT++A+ +   +  +Y+ M +G
Sbjct: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLG 400


>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 24.3 bits (51), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 133 IKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFV 177
           +KRR+  PF    DL        +   NN +  A R    +R FV
Sbjct: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221


>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 502

 Score = 24.3 bits (51), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 27/116 (23%)

Query: 70  TTKVRDEYYGYLKEDINNPMEHGYDILLI----------LTHQGLAPLKKLYED--QVTS 117
            + +RD     LK+ + N      D+LLI          + H+    L  L +   QV +
Sbjct: 242 ASAIRDNCALNLKDSLRN-----IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296

Query: 118 IFIAPPSEAELIQRRIKRR----EDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQ 169
               PPSE E +  RI+ R      +P  L       ++   F+I+ N L  + ++
Sbjct: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGL------HDYEMRFSILKNRLAISQKE 346


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 437

 Score = 23.9 bits (50), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 1  MAHIFVLIGASGVGKTTIAKQV 22
          M    +L+G +GVGKT I++++
Sbjct: 52 MPKNILLVGPTGVGKTAISRRL 73


>gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
          Length = 123

 Score = 23.5 bits (49), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 62  KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL-APLKKLYEDQVTSI 118
           K  G  +E  ++R      ++      ++HG+D +LI     L  P K+L    V  +
Sbjct: 49  KKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERV 106


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 23.5 bits (49), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 34  GVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82
           GVT   P + E+ Y+D + +++S  +  K+  L          YY +L+
Sbjct: 389 GVTIE-PCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 470

 Score = 22.3 bits (46), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 1  MAHIFVLIGASGVGKTTIAKQVV 23
          M +   ++GA  VGK+T+  ++V
Sbjct: 1  MIYTIAIVGAPNVGKSTLFNRLV 23


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 21.9 bits (45), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 2   AHIFVLIGASGVGKTTIAKQVVLN 25
           + + ++ G  G+GKT++A  +  N
Sbjct: 219 SDLIIIAGRPGMGKTSLATNIAYN 242


>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 509

 Score = 21.9 bits (45), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 4   IFVLIGASGVGKTTIAKQV 22
           + +  G SG GKTT++  V
Sbjct: 220 VALFFGLSGTGKTTLSASV 238


>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 343

 Score = 21.6 bits (44), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 81  LKEDINNPMEHGYDILLIL 99
           +KE INN  E G D LLI 
Sbjct: 125 VKEIINNLREEGCDRLLIF 143


>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 199

 Score = 21.6 bits (44), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 4  IFVLIGASGVGKTTIAK 20
          I  L G+ G GKTT+A+
Sbjct: 3  IIGLTGSIGTGKTTVAE 19


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 334

 Score = 21.6 bits (44), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 6  VLIGASGVGKTTIAKQVV 23
          + +G  G+GKTT+A+ V 
Sbjct: 58 LFVGPPGLGKTTLAQVVA 75


>gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 200

 Score = 21.6 bits (44), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 119 FIAPPSEAELIQR 131
           F+  PSEAEL+++
Sbjct: 186 FVVNPSEAELLEK 198


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.140    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,012
Number of Sequences: 1233
Number of extensions: 5074
Number of successful extensions: 43
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 31
length of query: 186
length of database: 328,796
effective HSP length: 69
effective length of query: 117
effective length of database: 243,719
effective search space: 28515123
effective search space used: 28515123
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)