BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] (186 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 387 bits (995), Expect = e-110, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG Sbjct: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 Query: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI Sbjct: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120 Query: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG Sbjct: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180 Query: 181 KKANYD 186 KKANYD Sbjct: 181 KKANYD 186 >gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 366 bits (939), Expect = e-103, Method: Compositional matrix adjust. Identities = 175/181 (96%), Positives = 178/181 (98%) Query: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 MAHIFVLIGASGVG+TTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG Sbjct: 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 Query: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI Sbjct: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120 Query: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180 APPSEAELIQRRIKRRED PFNLDPDLFGKNHSYSFTIVNNHLPTACRQVG IREFVK+ Sbjct: 121 APPSEAELIQRRIKRREDTPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGFIREFVKQH 180 Query: 181 K 181 + Sbjct: 181 R 181 >gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 82.0 bits (201), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 66/128 (51%) Query: 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63 + ++ SGVGK+TIA+ ++ + M + VTTR R +E DY F+S S+F K Sbjct: 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76 Query: 64 TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123 FIE +V +YG L++ I + G D+L + QG L K V S FI PP Sbjct: 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136 Query: 124 SEAELIQR 131 + EL R Sbjct: 137 TMQELCSR 144 >gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62] Length = 129 Score = 26.9 bits (58), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 67 FIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEA 126 F+ET + Y+ + + + + + + L+LT QGL PL V+S+ Sbjct: 64 FLETVRYGVMYF------MLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYI 117 Query: 127 ELIQRRI 133 + RR+ Sbjct: 118 RFMTRRV 124 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 26.9 bits (58), Expect = 0.22, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Query: 3 HIFVLIGASGVGKTTI----AKQVVLNSEYLVMPVGVTTRRPRVDE 44 H+ +++G +GVGKTT+ +K++ +++ G T R +D+ Sbjct: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 26.6 bits (57), Expect = 0.33, Method: Compositional matrix adjust. Identities = 11/14 (78%), Positives = 13/14 (92%) Query: 7 LIGASGVGKTTIAK 20 LIG SGVGK+T+AK Sbjct: 388 LIGESGVGKSTVAK 401 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 26.2 bits (56), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----SQFK 59 +V G +GVGKT I+KQ L +GV + R D +Y++ +S+ + Sbjct: 510 YVFSGPTGVGKTEISKQ-------LAFALGV--QLLRFDMSEYMERHAVSRLIGAPPGYV 560 Query: 60 GWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL 104 G+ G+ ++ ++ Y L ++I +ILL + G+ Sbjct: 561 GFGQGGILADSVD-QNPYSVVLLDEIEKSHPDVLNILLQIMDYGI 604 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 25.8 bits (55), Expect = 0.52, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 18/107 (16%) Query: 5 FVLIGASGVGKTTIAK---QVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----S 56 F+ +G +GVGKT + K +++ + E ++ R+D +Y++ +S+ Sbjct: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMI---------RIDMSEYMEKHSVSRLIGSPP 651 Query: 57 QFKGWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQG 103 + G++ G E + R Y L ++I ++ILL + G Sbjct: 652 GYVGYEEGGALTEAVR-RHPYQVVLFDEIEKAHSDVHNILLQVLDDG 697 Score = 22.3 bits (46), Expect = 5.0, Method: Compositional matrix adjust. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 6 VLIGASGVGKTTI 18 VLIG GVGKT I Sbjct: 203 VLIGDPGVGKTAI 215 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 25.4 bits (54), Expect = 0.70, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%) Query: 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRV 42 I LIG +G GK+TIAK + ++ P +G R P++ Sbjct: 38 IVTLIGPNGSGKSTIAKLIT----GIIKPTIGSVKRHPQL 73 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 25.0 bits (53), Expect = 0.82, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%) Query: 2 AHIFVLIGASGVGKTTIAKQV-----VLNSEYLV 30 I VL+G SG GK+T+ + + V+ E LV Sbjct: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 25.0 bits (53), Expect = 0.91, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%) Query: 3 HIFVLIGASGVGKTTIAKQV----------VLNSEYLVMPVGVTTRRPR 41 H +L+G G GKT +A+ V + S+++ + VGV R R Sbjct: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVR 230 >537021.9.peg.472_1 Length = 369 Score = 24.6 bits (52), Expect = 1.0, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 +A ++L G G+GKTT A+ + + Y + V T Sbjct: 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 24.3 bits (51), Expect = 1.3, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Query: 4 IFVLIGASGVGKTTIAKQVVLNS--EYLVMPVG 34 I +G GVGKT++A+ + + +Y+ M +G Sbjct: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLG 400 >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 24.3 bits (51), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 19/45 (42%) Query: 133 IKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFV 177 +KRR+ PF DL + NN + A R +R FV Sbjct: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 24.3 bits (51), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 27/116 (23%) Query: 70 TTKVRDEYYGYLKEDINNPMEHGYDILLI----------LTHQGLAPLKKLYED--QVTS 117 + +RD LK+ + N D+LLI + H+ L L + QV + Sbjct: 242 ASAIRDNCALNLKDSLRN-----IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296 Query: 118 IFIAPPSEAELIQRRIKRR----EDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQ 169 PPSE E + RI+ R +P L ++ F+I+ N L + ++ Sbjct: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGL------HDYEMRFSILKNRLAISQKE 346 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 1 MAHIFVLIGASGVGKTTIAKQV 22 M +L+G +GVGKT I++++ Sbjct: 52 MPKNILLVGPTGVGKTAISRRL 73 >gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62] Length = 123 Score = 23.5 bits (49), Expect = 2.3, Method: Compositional matrix adjust. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 62 KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL-APLKKLYEDQVTSI 118 K G +E ++R ++ ++HG+D +LI L P K+L V + Sbjct: 49 KKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERV 106 >gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 947 Score = 23.5 bits (49), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 34 GVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 GVT P + E+ Y+D + +++S + K+ L YY +L+ Sbjct: 389 GVTIE-PCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 22.3 bits (46), Expect = 5.8, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 15/23 (65%) Query: 1 MAHIFVLIGASGVGKTTIAKQVV 23 M + ++GA VGK+T+ ++V Sbjct: 1 MIYTIAIVGAPNVGKSTLFNRLV 23 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 21.9 bits (45), Expect = 6.7, Method: Compositional matrix adjust. Identities = 7/24 (29%), Positives = 15/24 (62%) Query: 2 AHIFVLIGASGVGKTTIAKQVVLN 25 + + ++ G G+GKT++A + N Sbjct: 219 SDLIIIAGRPGMGKTSLATNIAYN 242 >gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 21.9 bits (45), Expect = 7.5, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 4 IFVLIGASGVGKTTIAKQV 22 + + G SG GKTT++ V Sbjct: 220 VALFFGLSGTGKTTLSASV 238 >gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 21.6 bits (44), Expect = 8.5, Method: Compositional matrix adjust. Identities = 11/19 (57%), Positives = 12/19 (63%) Query: 81 LKEDINNPMEHGYDILLIL 99 +KE INN E G D LLI Sbjct: 125 VKEIINNLREEGCDRLLIF 143 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 21.6 bits (44), Expect = 9.2, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 4 IFVLIGASGVGKTTIAK 20 I L G+ G GKTT+A+ Sbjct: 3 IIGLTGSIGTGKTTVAE 19 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 21.6 bits (44), Expect = 9.2, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 6 VLIGASGVGKTTIAKQVV 23 + +G G+GKTT+A+ V Sbjct: 58 LFVGPPGLGKTTLAQVVA 75 >gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter asiaticus str. psy62] Length = 200 Score = 21.6 bits (44), Expect = 10.0, Method: Compositional matrix adjust. Identities = 7/13 (53%), Positives = 11/13 (84%) Query: 119 FIAPPSEAELIQR 131 F+ PSEAEL+++ Sbjct: 186 FVVNPSEAELLEK 198 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.140 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 122,012 Number of Sequences: 1233 Number of extensions: 5074 Number of successful extensions: 43 Number of sequences better than 100.0: 29 Number of HSP's better than 100.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 31 length of query: 186 length of database: 328,796 effective HSP length: 69 effective length of query: 117 effective length of database: 243,719 effective search space: 28515123 effective search space used: 28515123 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 36 (18.5 bits)