Query gi|254780133|ref|YP_003064546.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Sun May 22 06:53:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780133.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2joza1 b.60.1.1 (A:2-127) Hyp 23.0 23 0.0017 15.4 2.3 39 19-57 62-101 (126) 2 d1knxa1 c.98.2.1 (A:1-132) HPr 13.3 24 0.0017 15.4 0.5 23 38-60 72-94 (132) 3 d1t0ha_ b.34.2.1 (A:) SH3-like 12.9 19 0.0014 15.9 -0.1 17 36-52 24-40 (96) 4 d2efva1 a.43.1.12 (A:6-87) Unc 8.6 26 0.0019 15.1 -0.6 21 1-21 2-22 (82) 5 d1lf6a2 b.30.5.5 (A:11-287) Ba 8.1 60 0.0044 13.2 1.0 25 7-31 52-76 (277) 6 d1co4a_ g.47.1.1 (A:) Zinc dom 5.6 96 0.007 12.1 1.0 29 33-61 2-30 (42) 7 d1oeyj_ d.15.2.2 (J:) Neutroph 4.4 1.2E+02 0.0086 11.6 1.6 12 14-25 15-26 (105) 8 d2b3ya2 c.83.1.1 (A:2-630) Iro 4.3 40 0.0029 14.1 -1.6 14 19-32 429-442 (629) 9 d1b34b_ b.38.1.1 (B:) D2 core 4.3 1.2E+02 0.0089 11.5 1.2 13 45-57 75-87 (93) 10 d1f0la2 d.166.1.1 (A:1-187) Di 4.2 1.1E+02 0.0081 11.8 0.5 7 55-61 67-73 (187) No 1 >d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]} Probab=22.97 E-value=23 Score=15.41 Aligned_cols=39 Identities=33% Similarity=0.542 Sum_probs=30.9 Q ss_pred EEEEEEECCCCEEEEEECCEEEEEEC-CCCCCCEEEEEEC Q ss_conf 46888606774799997430687501-1037972599727 Q gi|254780133|r 19 DIAVIASETNTRIEIELEGAIYRFEP-MIRGDNPCLIVDN 57 (63) Q Consensus 19 diaviasetntrieielegaiyrfep-mirgdnpclivdn 57 (63) -..||...|.-.|||+.-|.-|-... +-||.|-.||-.. T Consensus 62 ~ykvisq~tdgsiei~ylg~~~p~kstlkrg~n~tliw~~ 101 (126) T d2joza1 62 AYKVISQSTDGSIEIQYLGPYYPLKSTLKRGENGTLIWEQ 101 (126) T ss_dssp EEEEEECCSSSEEEEEEESTTCSCEEEEEECSTTCEEEEE T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEE T ss_conf 5664002688718889737985335687378888178985 No 2 >d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Probab=13.32 E-value=24 Score=15.36 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=18.3 Q ss_pred EEEEEECCCCCCCEEEEEECCCC Q ss_conf 06875011037972599727886 Q gi|254780133|r 38 AIYRFEPMIRGDNPCLIVDNDNP 60 (63) Q Consensus 38 aiyrfepmirgdnpclivdndnp 60 (63) ...+++-|...+-||+|+-.+.. T Consensus 72 r~~~l~~l~~~~~PciIvt~~~~ 94 (132) T d1knxa1 72 QQQILHNLLKLNPPAIILTKSFT 94 (132) T ss_dssp HTTTHHHHHTTCCSCEEEETTTC T ss_pred HHHHHHHHHCCCCCEEEEECCCC T ss_conf 99999998476998899979799 No 3 >d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=12.94 E-value=19 Score=15.91 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.0 Q ss_pred CCEEEEEECCCCCCCEE Q ss_conf 43068750110379725 Q gi|254780133|r 36 EGAIYRFEPMIRGDNPC 52 (63) Q Consensus 36 egaiyrfepmirgdnpc 52 (63) --|+|.|+|..-+++|| T Consensus 24 vrAlydY~~~~dd~~P~ 40 (96) T d1t0ha_ 24 VRTNVRYSAAQEDDVPV 40 (96) T ss_dssp EEESSCBCCCGGGCCSS T ss_pred EEEEECCCCCCCCCCCC T ss_conf 99910348977887766 No 4 >d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]} Probab=8.64 E-value=26 Score=15.14 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=16.2 Q ss_pred CCCCCCCEEEEEEEEECEEEE Q ss_conf 973234315557765111468 Q gi|254780133|r 1 MTEKANKRYSLIRRVDIRDIA 21 (63) Q Consensus 1 mtekankryslirrvdirdia 21 (63) |.||-+.-++|+..+|-|++- T Consensus 2 ~~~k~r~~f~L~~~id~r~lR 22 (82) T d2efva1 2 MKEKKRATFYLYKNIDGRKLR 22 (82) T ss_dssp CCCCCEEEEEESSCCCHHHHH T ss_pred CCCCCCCEEEEEECCCHHHHH T ss_conf 431333358876617788999 No 5 >d1lf6a2 b.30.5.5 (A:11-287) Bacterial glucoamylase, N-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Probab=8.11 E-value=60 Score=13.21 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=15.4 Q ss_pred CEEEEEEEEECEEEEEEEECCCCEE Q ss_conf 3155577651114688860677479 Q gi|254780133|r 7 KRYSLIRRVDIRDIAVIASETNTRI 31 (63) Q Consensus 7 kryslirrvdirdiaviasetntri 31 (63) -.|.+|-...|||.-.+.+..++.. T Consensus 52 vyyP~id~~qirdLqflVtdg~~f~ 76 (277) T d1lf6a2 52 VYYPTIDTADVKEIKFIVTDGKSFV 76 (277) T ss_dssp EECSSTTCEEEEEEEEEEECSSSCC T ss_pred EECCCCCCCCCCCEEEEEECCCCCE T ss_conf 6515778724000059997588523 No 6 >d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic} Probab=5.60 E-value=96 Score=12.10 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=17.6 Q ss_pred EEECCEEEEEECCCCCCCEEEEEECCCCC Q ss_conf 99743068750110379725997278865 Q gi|254780133|r 33 IELEGAIYRFEPMIRGDNPCLIVDNDNPL 61 (63) Q Consensus 33 ielegaiyrfepmirgdnpclivdndnpl 61 (63) +-..|.-|--|+-|||.------.+|.|| T Consensus 2 vli~g~KyAC~~CIRGHRsS~C~H~dRpL 30 (42) T d1co4a_ 2 VVINGVKYACDSCIKSHKAAQCEHNDRPL 30 (42) T ss_dssp EEETTEEEEETTTTTTSGGGGCCCCSSCE T ss_pred EEECCEEEEHHHHHCCCCCCCCCCCCCCC T ss_conf 67878067476664715326442588645 No 7 >d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Probab=4.40 E-value=1.2e+02 Score=11.61 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=8.6 Q ss_pred EEECEEEEEEEE Q ss_conf 651114688860 Q gi|254780133|r 14 RVDIRDIAVIAS 25 (63) Q Consensus 14 rvdirdiavias 25 (63) .+++|||+|-.. T Consensus 15 ~~~~rDI~veed 26 (105) T d1oeyj_ 15 ISTIKDIAVEED 26 (105) T ss_dssp EEEEEEEEECSC T ss_pred CCEEEEEEECCC T ss_conf 640312787200 No 8 >d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=4.35 E-value=40 Score=14.15 Aligned_cols=14 Identities=50% Similarity=0.304 Sum_probs=0.0 Q ss_pred EEEEEEECCCCEEE Q ss_conf 46888606774799 Q gi|254780133|r 19 DIAVIASETNTRIE 32 (63) Q Consensus 19 diaviasetntrie 32 (63) ++|.|.|-||+|++ T Consensus 429 ~ia~IgSCTN~s~~ 442 (629) T d2b3ya2 429 VIAAITSCTNTSNP 442 (629) T ss_dssp EEEEECCHHHHTCH T ss_pred EEEEEECCCCCCCH T ss_conf 79999667788817 No 9 >d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Probab=4.25 E-value=1.2e+02 Score=11.55 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=0.0 Q ss_pred CCCCCCEEEEEEC Q ss_conf 1037972599727 Q gi|254780133|r 45 MIRGDNPCLIVDN 57 (63) Q Consensus 45 mirgdnpclivdn 57 (63) ++||||--+|..+ T Consensus 75 liRGdnVv~I~~~ 87 (93) T d1b34b_ 75 FLRGDSVIVVLRN 87 (93) T ss_dssp EECGGGEEEEEEC T ss_pred EEECCEEEEEECC T ss_conf 9919999999748 No 10 >d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]} Probab=4.17 E-value=1.1e+02 Score=11.75 Aligned_cols=7 Identities=86% Similarity=1.426 Sum_probs=0.0 Q ss_pred EECCCCC Q ss_conf 7278865 Q gi|254780133|r 55 VDNDNPL 61 (63) Q Consensus 55 vdndnpl 61 (63) |||.||| T Consensus 67 vdnenpl 73 (187) T d1f0la2 67 VDNENPL 73 (187) T ss_dssp BCTTSTT T ss_pred CCCCCCC T ss_conf 3688977 Done!