BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780133|ref|YP_003064546.1| hypothetical protein
CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780133|ref|YP_003064546.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039810|gb|ACT56606.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|317120847|gb|ADV02668.1| hypothetical protein UF506_045 [Candidatus Liberibacter
          asiaticus]
          Length = 63

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MTEKANKRYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNP 60
          MTEKANKRYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNP
Sbjct: 1  MTEKANKRYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNP 60

Query: 61 LDL 63
          LDL
Sbjct: 61 LDL 63


>gi|315122000|ref|YP_004062489.1| hypothetical protein CKC_01250 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495402|gb|ADR52001.1| hypothetical protein CKC_01250 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 67

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 33/50 (66%)

Query: 14 RVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNPLDL 63
          R+ IRD A IA E N RIEIE +G IYRFEP+ +  NP    DN NPL L
Sbjct: 13 RISIRDTARIAKENNIRIEIERDGTIYRFEPLSKRKNPPAEEDNSNPLGL 62


>gi|315122593|ref|YP_004063082.1| hypothetical protein CKC_04225 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495995|gb|ADR52594.1| hypothetical protein CKC_04225 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 61

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 29/45 (64%)

Query: 1  MTEKANKRYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPM 45
          MT    K +    R+ IRD A IA ETN RIEIE +G IYRFEP+
Sbjct: 1  MTNIEQKPHPHKGRISIRDTARIAQETNIRIEIERDGTIYRFEPL 45


>gi|315122594|ref|YP_004063083.1| hypothetical protein CKC_04230 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495996|gb|ADR52595.1| hypothetical protein CKC_04230 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 56

 Score = 37.3 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 15 VDIRDIAVIASETNTRIEIELEGAIYRFEP 44
          +DIR++A I+ +T  RIEIE  G +YRF+P
Sbjct: 7  IDIRNVANISKDTKIRIEIERNGTLYRFDP 36


>gi|2754746|gb|AAC39433.1| sucrose-phosphate synthase [Actinidia deliciosa]
          Length = 769

 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 4/48 (8%)

Query: 3   EKANKRYSLIRRVDIRDIAVIASE---TNTRIEIELEGAIYR-FEPMI 46
           ++ NK Y ++RR++  ++++ ASE   T+TR EIE +  +Y  F+P+I
Sbjct: 74  DEINKTYKIMRRIEAEELSLDASEIVITSTRQEIEQQWRLYDGFDPVI 121


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.321    0.140    0.395 

Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,883,389
Number of Sequences: 13984884
Number of extensions: 15048748
Number of successful extensions: 27463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27459
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 4,792,584,752
effective HSP length: 35
effective length of query: 28
effective length of database: 4,303,113,812
effective search space: 120487186736
effective search space used: 120487186736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.8 bits)