RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780133|ref|YP_003064546.1| hypothetical protein
CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
          Length = 330

 Score = 26.8 bits (60), Expect = 1.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 12 IRRVDIRDIAVIASETNTRIEIELEGA----IYRFEPMIRGDNPCLIVDNDNPLDL 63
          IRR  +R  A +    NT I+  LE A    + + E  + G    LI  N NP  L
Sbjct: 41 IRR-KLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQV-ALIFTNMNPFKL 94


>gnl|CDD|178028 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase.
          Length = 418

 Score = 24.6 bits (53), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 40  YRFEPMIRGDNPCLIVD 56
           Y  + +I GD+PCL+ D
Sbjct: 140 YNIDYIIHGDDPCLLPD 156


>gnl|CDD|180457 PRK06193, PRK06193, hypothetical protein; Provisional.
          Length = 206

 Score = 23.9 bits (52), Expect = 8.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 29  TRIEIELEGAIYRFEP 44
           T I  E EG    FEP
Sbjct: 171 TGIYPEPEGEAAVFEP 186


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0768    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,022,818
Number of extensions: 49403
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 12
Length of query: 63
Length of database: 5,994,473
Length adjustment: 35
Effective length of query: 28
Effective length of database: 5,238,193
Effective search space: 146669404
Effective search space used: 146669404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)