RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780133|ref|YP_003064546.1| hypothetical protein
CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin
           torroid, super beta sandwich, carbohydrase family GH15;
           2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP:
           a.102.1.5 b.30.5.5 PDB: 1lf9_A*
          Length = 684

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 8   RYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPM 45
            Y  I   D+++I  I ++  + +  E + AI + E  
Sbjct: 63  YYPTIDTADVKEIKFIVTDGKSFVPDETKDAISKVEKF 100


>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
           activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
           c.83.1.1 PDB: 2b3x_A 2ipy_A
          Length = 888

 Score = 24.7 bits (53), Expect = 5.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 19  DIAVIASETNTRIEIELEGA 38
            IA I S TNT     + GA
Sbjct: 429 VIAAITSCTNTSNPSVMLGA 448


>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
           rectifier, potassium channel, selectivity filter, metal
           transport; HET: BNG; 2.20A {Burkholderia xenovorans}
          Length = 321

 Score = 24.5 bits (53), Expect = 6.4
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 40  YRFEPMIRGDNPCLIVDNDN 59
           +RF P+I  +     VD   
Sbjct: 272 HRFFPVISLEEGFFKVDYSQ 291


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 535,025
Number of extensions: 19323
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 10
Length of query: 63
Length of database: 5,693,230
Length adjustment: 34
Effective length of query: 29
Effective length of database: 4,868,934
Effective search space: 141199086
Effective search space used: 141199086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)