BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780133|ref|YP_003064546.1| hypothetical protein
CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780133|ref|YP_003064546.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 63

 Score =  127 bits (318), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MTEKANKRYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNP 60
          MTEKANKRYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNP
Sbjct: 1  MTEKANKRYSLIRRVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNP 60

Query: 61 LDL 63
          LDL
Sbjct: 61 LDL 63


>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 22.7 bits (47), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 46  IRGDNPCLIVDNDN 59
           I GDNP L+V+ D+
Sbjct: 109 ISGDNPLLLVNEDS 122


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 22.3 bits (46), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 42 FEPMIRGDNPCLIVDN 57
          F   IR + P L+VDN
Sbjct: 82 FSATIRSNTPILVVDN 97


>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 744

 Score = 21.6 bits (44), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 34  ELEGAIYRFEPMIRGDNPCLIVDNDNP 60
           E+EGAI R   M R     LI+    P
Sbjct: 548 EIEGAIQRLAQMARAAGIHLIMATQRP 574


>gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport
           system [Candidatus Liberibacter asiaticus str. psy62]
          Length = 309

 Score = 20.0 bits (40), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 34  ELEGAIYRFEPMIRGDNPCLIVDNDNPLDL 63
           EL   IY  EP   G+   L + N+N   L
Sbjct: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSL 166


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.140    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,582
Number of Sequences: 1233
Number of extensions: 1120
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 328,796
effective HSP length: 34
effective length of query: 29
effective length of database: 286,874
effective search space:  8319346
effective search space used:  8319346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)