HHsearch alignment for GI: 254780134 and conserved domain: COG0582

>COG0582 XerC Integrase [DNA replication, recombination, and repair].
Probab=99.78  E-value=2.1e-16  Score=125.19  Aligned_cols=191  Identities=18%  Similarity=0.235  Sum_probs=134.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCC
Q ss_conf             9789999999999999644552001056651034-643244442116523445666640378-08999989898618873
Q gi|254780134|r  129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRC  206 (348)
Q Consensus       129 ~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~-~~~~~~~~~~~~t~~ei~~~~~~~~~~-~~~~~~~~l~~~TG~R~  206 (348)
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~tG~R~  158 (309)
T COG0582          84 STLTRVFRLAALRGFFAYLDNPG----APLKALREKPKRRKKLPKALTAEEVEALLEALDRYRDALRLALLIL-LTGLRV  158 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCH
T ss_conf             47779999999988888621631----0466653113445445454899999999999875057899999998-718779


Q ss_pred             CCCCCCCCCEEEEE--CCCCCCC--CCHHHHHHCCHHHHHHHHHHHCCCCC---CCCCCCCCCCC-----CHHHHHHHHH
Q ss_conf             10025664014430--2332113--31024331121689999964201332---21122245775-----8778999999
Q gi|254780134|r  207 SDSCRAGVQHLQNN--IFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKE---TFFINNDKQKM-----NATQFSIWFK  274 (348)
Q Consensus       207 ~Ei~~L~~~did~~--~i~~~~~--Kt~~~~~vpl~~~l~~~l~~~~~~~~---~~~~~~~g~~~-----~~~~~~~~~~  274 (348)
T Consensus       159 ~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
T COG0582         159 SELLGLRWSDIDLENGTIWIRGTKTKGRKERRVPLSEQALEALKKYLLIRRPREYLFLSLRGPRLSRSALTINRLLRARA  238 (309)
T ss_pred             HHHHHCCHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99982766650545672799613555665158960599999999999854443300653235653310367999999999


Q ss_pred             HHHHHCCCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999983889-981402699999999848998899999649998999999999
Q gi|254780134|r  275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG  325 (348)
Q Consensus       275 ~~~~~agi~-~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~  325 (348)
T Consensus       239 ~~~~~~~~~~~~~h~lRht~~~~~~~~~-~~~~~~~~~gH~~~~~~~~~~~~  289 (309)
T COG0582         239 KAAKEAGIRKITPHGLRHTFATLLLAGG-DERVIQKLLGHASLNTTQTVYYH  289 (309)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9732227888787740789999998568-76589998378708789999998