HHsearch alignment for GI: 254780134 and conserved domain: COG0582
>COG0582 XerC Integrase [DNA replication, recombination, and repair].
Probab=99.78 E-value=2.1e-16 Score=125.19 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCC
Q ss_conf 9789999999999999644552001056651034-643244442116523445666640378-08999989898618873
Q gi|254780134|r 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRC 206 (348)
Q Consensus 129 ~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~-~~~~~~~~~~~~t~~ei~~~~~~~~~~-~~~~~~~~l~~~TG~R~ 206 (348)
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~tG~R~ 158 (309)
T COG0582 84 STLTRVFRLAALRGFFAYLDNPG----APLKALREKPKRRKKLPKALTAEEVEALLEALDRYRDALRLALLIL-LTGLRV 158 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCH
T ss_conf 47779999999988888621631----0466653113445445454899999999999875057899999998-718779
Q ss_pred CCCCCCCCCEEEEE--CCCCCCC--CCHHHHHHCCHHHHHHHHHHHCCCCC---CCCCCCCCCCC-----CHHHHHHHHH
Q ss_conf 10025664014430--2332113--31024331121689999964201332---21122245775-----8778999999
Q gi|254780134|r 207 SDSCRAGVQHLQNN--IFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKE---TFFINNDKQKM-----NATQFSIWFK 274 (348)
Q Consensus 207 ~Ei~~L~~~did~~--~i~~~~~--Kt~~~~~vpl~~~l~~~l~~~~~~~~---~~~~~~~g~~~-----~~~~~~~~~~ 274 (348)
T Consensus 159 ~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (309)
T COG0582 159 SELLGLRWSDIDLENGTIWIRGTKTKGRKERRVPLSEQALEALKKYLLIRRPREYLFLSLRGPRLSRSALTINRLLRARA 238 (309)
T ss_pred HHHHHCCHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99982766650545672799613555665158960599999999999854443300653235653310367999999999
Q ss_pred HHHHHCCCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999983889-981402699999999848998899999649998999999999
Q gi|254780134|r 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 275 ~~~~~agi~-~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
T Consensus 239 ~~~~~~~~~~~~~h~lRht~~~~~~~~~-~~~~~~~~~gH~~~~~~~~~~~~ 289 (309)
T COG0582 239 KAAKEAGIRKITPHGLRHTFATLLLAGG-DERVIQKLLGHASLNTTQTVYYH 289 (309)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9732227888787740789999998568-76589998378708789999998