HHsearch alignment for GI: 254780134 and conserved domain: COG4974
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair].
Probab=100.00 E-value=6.3e-40 Score=278.11 Aligned_cols=256 Identities=18% Similarity=0.246 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCC---CCHHHCCHHHHHHHHHHHCC---CHHHHHHHHHHHHHH
Q ss_conf 8999999998355-4356978899999999999999569---99589699999998875159---978999999999999
Q gi|254780134|r 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVL 143 (348)
Q Consensus 71 l~~l~~~y~~~~~-~~~l~~~T~~~~~~~~~~~~~~~g~---~~l~~it~~~i~~~~~~~~~---~~~t~n~~~~~l~~~ 143 (348)
T Consensus 5 ~~~~i~~fL~~l~~Er~ls~nTl~sYrrDL~~f~~~L~~~~~~~l~~~~~~di~~yl~~l~~~g~s~~S~aR~lsalR~f 84 (300)
T COG4974 5 DEALIEQFLEYLWIERGLSANTLSSYRRDLEDFREWLEERGITDLADATEADIREYLTELAEQGLSATSIARALSALRSF 84 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 78999999999999754326449999999999999987627988454689999999999985786722488999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 964455200105665103464324444211652344566664037----8089999898986188731002566401443
Q gi|254780134|r 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 (348)
Q Consensus 144 ~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~----~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~ 219 (348)
T Consensus 85 y~fl~~E~~~~~dP~~~l~~PK~~~~LPk~Ls~~eve~Ll~~~~~~~p~~LRdrAmlELLYATGlRVSElv~L~l~dv~~ 164 (300)
T COG4974 85 YQFLIREGLREDDPTRLLDSPKLPKRLPKFLSEEEVEALLEAPDEDTPLGLRDRAMLELLYATGLRVSELVGLTLSDVDL 164 (300)
T ss_pred HHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCC
T ss_conf 99999779853382444247877776776259999999981888898075799999999998277599985675765132
Q ss_pred --ECCCCCCCCCHHHHHHCCHHHHHHHHHHH-----C-----CC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--C
Q ss_conf --02332113310243311216899999642-----0-----13-32211222457758778999999999983889--9
Q gi|254780134|r 220 --NIFSIKTQKTGTIITVELPDGFMKLLAMT-----P-----IG-KETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 (348)
Q Consensus 220 --~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~-----~-----~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~ 284 (348)
T Consensus 165 ~~~~v~V~-GKG~KeR~VP~g~~A~~~l~~Yl~~~R~~l~~~~~~~~~LF~n~~g~~ltrq~~w~~lk~~a~~Agi~~~i 243 (300)
T COG4974 165 RQGVVRVR-GKGNKERLVPFGEEAVEALEKYLEEARPKLLKGKSSTDALFPNQRGGGLTRQGFWKRLKDYAERAGIDKKI 243 (300)
T ss_pred CCCEEEEE-CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 46868997-15882555213399999999999986598842578898564548999877999999999999981888786
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8140269999999984899889999964999899999999998
Q gi|254780134|r 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 (348)
Q Consensus 285 ~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~ 327 (348)
T Consensus 244 sPH~LRHsFATHLL~~GADlRvVQeLLGHadisTTQIYTHV~~ 286 (300)
T COG4974 244 SPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHVTK 286 (300)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 8136578899999867853999999848665015578799889