HHsearch alignment for GI: 254780134 and conserved domain: PRK00236
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed.
Probab=100.00 E-value=5.6e-45 Score=311.31 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=218.8
Q ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH---CCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf 789999999983554-3569788999999999999995---69995896999999988751---5997899999999999
Q gi|254780134|r 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 (348)
Q Consensus 70 Tl~~l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~---g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~ 142 (348)
T Consensus 5 ~~~~~i~~fl~~l~~~r~lS~~Ti~~Y~~~l~~f~~~~~~~~~~~l~~i~~~~i~~~~~~l~~~g~s~~Ti~~~l~~lr~ 84 (295)
T PRK00236 5 DLPAALEAFLEYLRVERGLSPHTLRAYRRDLRAFLAFLEEVGLADLQQLDLADLRAFLARLRRQGLSARSLARRLSALRS 84 (295)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 78999999999999885907999999999999999999875999947699999999999998769999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCEEE-
Q ss_conf 99644552001056651034643244442116523445666640378---08999989898618873100256640144-
Q gi|254780134|r 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 (348)
Q Consensus 143 ~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~---~~~~~~~~l~~~TG~R~~Ei~~L~~~did- 218 (348)
T Consensus 85 ~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~lt~~e~~~ll~~~~~~~~~~Rd~~i~~ll~~tGlR~~E~~~L~~~did~ 164 (295)
T PRK00236 85 FYRWLVRRGLLKANPAAGLRAPKAPKRLPKPLDVDQAKRLLDADADDPLALRDRAILELLYGSGLRLSELVGLDIDDLDL 164 (295)
T ss_pred HHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCC
T ss_conf 99988762861457787512777665688500189999999713258065899999999998197833120563977277
Q ss_pred -EECCCCCCCCCHHHHHHCCHHHHHHHHHH----HC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHH
Q ss_conf -30233211331024331121689999964----20--1332211222457758778999999999983889--981402
Q gi|254780134|r 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAM----TP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 (348)
Q Consensus 219 -~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~----~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~l 289 (348)
T Consensus 165 ~~~~i~i~-~Kg~K~R~Vpl~~~~~~~L~~yl~~~~~~~~~~~lF~~~~g~~l~~~~i~~~~~~~~~~~gi~~~~~~H~l 243 (295)
T PRK00236 165 ASGTVRVL-GKGNKERTVPVGSAALEALEAYLARPLAEEDDDALFLGARGGRLSPRVVQRRVKKLRKKAGLPEHITPHKL 243 (295)
T ss_pred CCCEEEEE-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 78989881-78981689865999999999999967767899837756899958788999999999998599999989978
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHH
Q ss_conf 6999999998489988999996499989999999999-89999999
Q gi|254780134|r 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 (348)
Q Consensus 290 Rht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~-~~~r~a~~ 334 (348)
T Consensus 244 RHt~At~l~~~G~~l~~vq~~LGHssi~tT~~Y~h~~~~~l~~~~~ 289 (295)
T PRK00236 244 RHSFATHLLESGGDLRAVQELLGHASLSTTQIYTHVDFQHLAEVYD 289 (295)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8999999998799999999881899889999988689999999999