HHsearch alignment for GI: 254780134 and conserved domain: PRK00236

>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed.
Probab=100.00  E-value=5.6e-45  Score=311.31  Aligned_cols=264  Identities=16%  Similarity=0.233  Sum_probs=218.8

Q ss_pred             CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH---CCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf             789999999983554-3569788999999999999995---69995896999999988751---5997899999999999
Q gi|254780134|r   70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV  142 (348)
Q Consensus        70 Tl~~l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~---g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~  142 (348)
T Consensus         5 ~~~~~i~~fl~~l~~~r~lS~~Ti~~Y~~~l~~f~~~~~~~~~~~l~~i~~~~i~~~~~~l~~~g~s~~Ti~~~l~~lr~   84 (295)
T PRK00236          5 DLPAALEAFLEYLRVERGLSPHTLRAYRRDLRAFLAFLEEVGLADLQQLDLADLRAFLARLRRQGLSARSLARRLSALRS   84 (295)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             78999999999999885907999999999999999999875999947699999999999998769999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCEEE-
Q ss_conf             99644552001056651034643244442116523445666640378---08999989898618873100256640144-
Q gi|254780134|r  143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-  218 (348)
Q Consensus       143 ~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~---~~~~~~~~l~~~TG~R~~Ei~~L~~~did-  218 (348)
T Consensus        85 ~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~lt~~e~~~ll~~~~~~~~~~Rd~~i~~ll~~tGlR~~E~~~L~~~did~  164 (295)
T PRK00236         85 FYRWLVRRGLLKANPAAGLRAPKAPKRLPKPLDVDQAKRLLDADADDPLALRDRAILELLYGSGLRLSELVGLDIDDLDL  164 (295)
T ss_pred             HHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCC
T ss_conf             99988762861457787512777665688500189999999713258065899999999998197833120563977277


Q ss_pred             -EECCCCCCCCCHHHHHHCCHHHHHHHHHH----HC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHH
Q ss_conf             -30233211331024331121689999964----20--1332211222457758778999999999983889--981402
Q gi|254780134|r  219 -NNIFSIKTQKTGTIITVELPDGFMKLLAM----TP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV  289 (348)
Q Consensus       219 -~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~----~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~l  289 (348)
T Consensus       165 ~~~~i~i~-~Kg~K~R~Vpl~~~~~~~L~~yl~~~~~~~~~~~lF~~~~g~~l~~~~i~~~~~~~~~~~gi~~~~~~H~l  243 (295)
T PRK00236        165 ASGTVRVL-GKGNKERTVPVGSAALEALEAYLARPLAEEDDDALFLGARGGRLSPRVVQRRVKKLRKKAGLPEHITPHKL  243 (295)
T ss_pred             CCCEEEEE-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             78989881-78981689865999999999999967767899837756899958788999999999998599999989978


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHH
Q ss_conf             6999999998489988999996499989999999999-89999999
Q gi|254780134|r  290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK  334 (348)
Q Consensus       290 Rht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~-~~~r~a~~  334 (348)
T Consensus       244 RHt~At~l~~~G~~l~~vq~~LGHssi~tT~~Y~h~~~~~l~~~~~  289 (295)
T PRK00236        244 RHSFATHLLESGGDLRAVQELLGHASLSTTQIYTHVDFQHLAEVYD  289 (295)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8999999998799999999881899889999988689999999999