HHsearch alignment for GI: 254780134 and conserved domain: PRK09692
>PRK09692 integrase; Provisional.
Probab=100.00 E-value=1e-34 Score=244.27 Aligned_cols=322 Identities=15% Similarity=0.186 Sum_probs=226.9
Q ss_pred CCCEEEECCCCCEEEEEE---ECCCCEE--ECCCCCCHHHHHHHHH------HHHCCCCCHH----H-HHCCCCCCCCHH
Q ss_conf 981896228993899997---0895657--5588999889999999------9853431012----3-102323448789
Q gi|254780134|r 9 PFVTKERTRHGKIIYYFR---KGHGRRI--RLPYPHESTFIPAYMS------ALTGSTPKRE----Y-INSPRKKPTTLK 72 (348)
Q Consensus 9 ~~v~~~~~r~G~~~~~~r---~~~~~~~--~~~~~~~~~~~~~~~~------a~~~~~~~~~----~-~~~~~~~~~Tl~ 72 (348)
T Consensus 29 ~GL~l~V~psG~K~w~~rY~~~~~~kr~~~~LG~yP~~SL~~AR~~a~e~r~~l~~GiDP~~~~~~~~~~~~~~~~~tf~ 108 (413)
T PRK09692 29 DGLELLIKSSGSKIWQFRYIRPVTKTRAKKSIGPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQ 108 (413)
T ss_pred CCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98389998899889999998568986888746189987899999999999999875788678889999999997771999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983554356978899999999-99999956999589699999998875159--978999999999999964455
Q gi|254780134|r 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVR 149 (348)
Q Consensus 73 ~l~~~y~~~~~~~~l~~~T~~~~~~~~-~~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~~~~~a~~ 149 (348)
T Consensus 109 ~va~~w~~~~~-~~~~~~~~~~~~r~le~~v~p~iG~~~i~~I~~~di~~~l~~i~~rg~~~~a~r~~~~l~~i~~~A~~ 187 (413)
T PRK09692 109 LVAERWWNVKK-ASVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINEVMIYAQN 187 (413)
T ss_pred HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999875-43257799999999998887985888410078999999987999739899999999999999999996
Q ss_pred HHHHHHHHHHCCCCCCC--CCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECC
Q ss_conf 20010566510346432--4444211652344566664037---808999989898618873100256640144--3023
Q gi|254780134|r 150 QEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF 222 (348)
Q Consensus 150 ~~~i~~NP~~~v~~~~~--~~~~~~~~t~~ei~~~~~~~~~---~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i 222 (348)
T Consensus 188 ~gli~~nP~~~~~~~~~~p~~~~~~~l~~~el~~l~~~l~~~~~~~~~~~~l~l~lLt~~R~~Ev~~arW~eiD~~~~~W 267 (413)
T PRK09692 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFMWQLLTITRPAEAAEARWEEVDIEAQEW 267 (413)
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHEECCCCEE
T ss_conf 58644585434345256875457776898999999999985799735789999999972326877367799955788879
Q ss_pred CCC--CCCCHHHHHHCCHHHHHHHHHHHC---CCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHH
Q ss_conf 321--133102433112168999996420---1332211222--457758778999999999983889--9814026999
Q gi|254780134|r 223 SIK--TQKTGTIITVELPDGFMKLLAMTP---IGKETFFINN--DKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 (348)
Q Consensus 223 ~~~--~~Kt~~~~~vpl~~~l~~~l~~~~---~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~ 293 (348)
T Consensus 268 ~IPaer~K~~~~h~VPLs~qA~~iL~~l~~~~~~~~~vFps~~~~~~~~s~~t~~~al~----~~~~~~~~t~Hd~RrT~ 343 (413)
T PRK09692 268 KIPAARMKMNRDHTVPLSDEAIAILEMMKPLSGNREFIFPSRIKPNQPMNSQTVNASLK----RAGFGGVLVSHGLRSIA 343 (413)
T ss_pred EECHHHCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHH----HCCCCCCEECCCCHHHH
T ss_conf 97568848988715278699999999999861997698036999999788899999999----66999976584845779
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHHH--HHHHHHHHHH
Q ss_conf 999998489988999996499989-99999999--9899999999
Q gi|254780134|r 294 ATISADAGATAHELMATYGWKTVD-QAETYTKG--ADRIRLGIKN 335 (348)
Q Consensus 294 at~l~~~G~~~~~i~~~lGHss~~-~t~~Y~~~--~~~~r~a~~a 335 (348)
T Consensus 344 ~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~ 388 (413)
T PRK09692 344 STALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQW 388 (413)
T ss_pred HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHH
T ss_conf 998997699999999986899998289995677599999999999