HHsearch alignment for GI: 254780134 and conserved domain: PRK09692

>PRK09692 integrase; Provisional.
Probab=100.00  E-value=1e-34  Score=244.27  Aligned_cols=322  Identities=15%  Similarity=0.186  Sum_probs=226.9

Q ss_pred             CCCEEEECCCCCEEEEEE---ECCCCEE--ECCCCCCHHHHHHHHH------HHHCCCCCHH----H-HHCCCCCCCCHH
Q ss_conf             981896228993899997---0895657--5588999889999999------9853431012----3-102323448789
Q gi|254780134|r    9 PFVTKERTRHGKIIYYFR---KGHGRRI--RLPYPHESTFIPAYMS------ALTGSTPKRE----Y-INSPRKKPTTLK   72 (348)
Q Consensus         9 ~~v~~~~~r~G~~~~~~r---~~~~~~~--~~~~~~~~~~~~~~~~------a~~~~~~~~~----~-~~~~~~~~~Tl~   72 (348)
T Consensus        29 ~GL~l~V~psG~K~w~~rY~~~~~~kr~~~~LG~yP~~SL~~AR~~a~e~r~~l~~GiDP~~~~~~~~~~~~~~~~~tf~  108 (413)
T PRK09692         29 DGLELLIKSSGSKIWQFRYIRPVTKTRAKKSIGPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQ  108 (413)
T ss_pred             CCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98389998899889999998568986888746189987899999999999999875788678889999999997771999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983554356978899999999-99999956999589699999998875159--978999999999999964455
Q gi|254780134|r   73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVR  149 (348)
Q Consensus        73 ~l~~~y~~~~~~~~l~~~T~~~~~~~~-~~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~~~~~a~~  149 (348)
T Consensus       109 ~va~~w~~~~~-~~~~~~~~~~~~r~le~~v~p~iG~~~i~~I~~~di~~~l~~i~~rg~~~~a~r~~~~l~~i~~~A~~  187 (413)
T PRK09692        109 LVAERWWNVKK-ASVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINEVMIYAQN  187 (413)
T ss_pred             HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999875-43257799999999998887985888410078999999987999739899999999999999999996


Q ss_pred             HHHHHHHHHHCCCCCCC--CCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECC
Q ss_conf             20010566510346432--4444211652344566664037---808999989898618873100256640144--3023
Q gi|254780134|r  150 QEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF  222 (348)
Q Consensus       150 ~~~i~~NP~~~v~~~~~--~~~~~~~~t~~ei~~~~~~~~~---~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i  222 (348)
T Consensus       188 ~gli~~nP~~~~~~~~~~p~~~~~~~l~~~el~~l~~~l~~~~~~~~~~~~l~l~lLt~~R~~Ev~~arW~eiD~~~~~W  267 (413)
T PRK09692        188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFMWQLLTITRPAEAAEARWEEVDIEAQEW  267 (413)
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHEECCCCEE
T ss_conf             58644585434345256875457776898999999999985799735789999999972326877367799955788879


Q ss_pred             CCC--CCCCHHHHHHCCHHHHHHHHHHHC---CCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHH
Q ss_conf             321--133102433112168999996420---1332211222--457758778999999999983889--9814026999
Q gi|254780134|r  223 SIK--TQKTGTIITVELPDGFMKLLAMTP---IGKETFFINN--DKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS  293 (348)
Q Consensus       223 ~~~--~~Kt~~~~~vpl~~~l~~~l~~~~---~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~  293 (348)
T Consensus       268 ~IPaer~K~~~~h~VPLs~qA~~iL~~l~~~~~~~~~vFps~~~~~~~~s~~t~~~al~----~~~~~~~~t~Hd~RrT~  343 (413)
T PRK09692        268 KIPAARMKMNRDHTVPLSDEAIAILEMMKPLSGNREFIFPSRIKPNQPMNSQTVNASLK----RAGFGGVLVSHGLRSIA  343 (413)
T ss_pred             EECHHHCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHH----HCCCCCCEECCCCHHHH
T ss_conf             97568848988715278699999999999861997698036999999788899999999----66999976584845779


Q ss_pred             HHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHHH--HHHHHHHHHH
Q ss_conf             999998489988999996499989-99999999--9899999999
Q gi|254780134|r  294 ATISADAGATAHELMATYGWKTVD-QAETYTKG--ADRIRLGIKN  335 (348)
Q Consensus       294 at~l~~~G~~~~~i~~~lGHss~~-~t~~Y~~~--~~~~r~a~~a  335 (348)
T Consensus       344 ~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~  388 (413)
T PRK09692        344 STALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQW  388 (413)
T ss_pred             HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHH
T ss_conf             998997699999999986899998289995677599999999999