HHsearch alignment for GI: 254780134 and conserved domain: TIGR02224
>TIGR02224 recomb_XerC tyrosine recombinase XerC; InterPro: IPR011931 The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents XerC, which is closely related to the other chromosomal protein XerD (IPR011932 from INTERPRO). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. XerC and XerD interact with cell division protein FtsK .; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=100.00 E-value=2.8e-45 Score=312.49 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=214.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-------CC-C--CHHHCCHHHHHHHHHHH-----CCCHHHHHHHHHH
Q ss_conf 99999835543569788999999999999995-------69-9--95896999999988751-----5997899999999
Q gi|254780134|r 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------GD-F--DYRKITTKHIRSGVESR-----KHTPSSAIQFLTS 139 (348)
Q Consensus 75 ~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~-------g~-~--~l~~it~~~i~~~~~~~-----~~~~~t~n~~~~~ 139 (348)
T Consensus 3 fl~yL~~e--r~~S~hT~~aY~~DL~~f~~fl~~~~~~~~~~~~~~~~~~~~~d~R~~la~l~~~~~g~s~rS~~R~LSa 80 (313)
T TIGR02224 3 FLEYLRVE--RNYSPHTLRAYRRDLEAFLEFLEEHKQEEGGPLLASLAEVTAADLRSFLAELHAKERGLSRRSLARKLSA 80 (313)
T ss_pred HHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 78999988--5000899999999999999999998775201110157624889999999999846578767689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---------CHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999644552001056651034643244442116523445666640378---------089999898986188731002
Q gi|254780134|r 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------SQPRLAFEFLLYSGLRCSDSC 210 (348)
Q Consensus 140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~---------~~~~~~~~l~~~TG~R~~Ei~ 210 (348)
T Consensus 81 lRsFy~~L~~~~~~~~nPa~~~~~PK~~~~LP~~L~~~~~~~ll~~~~~~~~~~~~~~~~RDrA~lEllYssGlRvSEl~ 160 (313)
T TIGR02224 81 LRSFYRFLLRRGLIDANPAAGVRAPKKPKKLPKFLSEDEMEALLDAPEEDAEDREDWLALRDRAILELLYSSGLRVSELV 160 (313)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999872874022388722675446799888989999996012346666777899989999999987468999982
Q ss_pred CCCCC-EE--EE--ECCCCCCCCCHHHHHHCCHHHHHHHHHH----HC-----CCC-----CCCCCCCCCCCCCHHHHHH
Q ss_conf 56640-14--43--0233211331024331121689999964----20-----133-----2211222457758778999
Q gi|254780134|r 211 RAGVQ-HL--QN--NIFSIKTQKTGTIITVELPDGFMKLLAM----TP-----IGK-----ETFFINNDKQKMNATQFSI 271 (348)
Q Consensus 211 ~L~~~-di--d~--~~i~~~~~Kt~~~~~vpl~~~l~~~l~~----~~-----~~~-----~~~~~~~~g~~~~~~~~~~ 271 (348)
T Consensus 161 ~L~~~~D~d~~~~~~~vrV-~GKG~KeR~VP~G~~A~~al~~YL~~~r~~~~~~~~~~~~~~~LF~~~~G~rL~~R~v~~ 239 (313)
T TIGR02224 161 GLDLSEDLDLDFSLGLVRV-RGKGNKERIVPFGSYARDALQAYLEERREPLLAKEPPAQDHDALFLNRRGGRLTPRGVRY 239 (313)
T ss_pred CCCCCCCCCCHHCCCEEEE-EECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 4771336473221476777-414881353031489999999998644721145667777522300178887257778999
Q ss_pred HHHHHHHHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999838899--814026999999998489988999996499989999999999899999
Q gi|254780134|r 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 (348)
Q Consensus 272 ~~~~~~~~agi~~--~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~~~r~a 332 (348)
T Consensus 240 ~l~~~~~~~~l~~~~hPH~LRHSFATHLL~~gaDLRaVQELLGH~SLSTTQiYTHv-~~~~L~ 301 (313)
T TIGR02224 240 RLQQLVAKAGLPKHVHPHALRHSFATHLLENGADLRAVQELLGHASLSTTQIYTHV-DFQHLA 301 (313)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH-HHHHHH
T ss_conf 99999985688886787531131799997468835589897444643566798884-099999