>TIGR02249 integrase_gron integron integrase; InterPro: IPR011946 Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family that also includes recombinases XerC (IPR011931 from INTERPRO) and XerD (IPR011932 from INTERPRO), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration.

Probab=100.00 E-value=2.1e-37 Score=261.70 Aligned_cols=250 Identities=18% Similarity=0.253 Sum_probs=203.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHH--HC-CCCHHHCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 983554356978899999999999999--56-999589699999998875159----97899999999999996445520 Q gi|254780134|r 79 RKSAHWGSLAVNSRISFESYFDQIIRK--SG-DFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQE 151 (348) Q Consensus 79 ~~~~~~~~l~~~T~~~~~~~~~~~~~~--~g-~~~l~~it~~~i~~~~~~~~~----~~~t~n~~~~~l~~~~~~a~~~~ 151 (348) T Consensus 6 ~e~~~~~hYs~~T~~aY~~Wi~rfI~frG~~C~~hp~~~g~~eVeaFLs~LAv~~~Vs~sTQ~QAL~ALlFLY~~iL~~~ 85 (320) T TIGR02249 6 REHMRLRHYSKRTEEAYLHWIKRFIRFRGHNCLRHPSTLGDTEVEAFLSDLAVDGKVSASTQNQALAALLFLYKEILKLE 85 (320) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99998888789999999999999998850510138533075678888567764257476579999999999999984688 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEE--ECCCCCCCCC Q ss_conf 01056651034643244442116523445666640378089999898986188731002566401443--0233211331 Q gi|254780134|r 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229 (348) Q Consensus 152 ~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~--~~i~~~~~Kt 229 (348) T Consensus 86 L~~~---~~~~Ra~~~~kLPvVLT~eEV~~~l~~l~eg-~y~L~a~LLYGsGMRlmE~LRLRikDiDF~~~~I~vr~GKG 161 (320) T TIGR02249 86 LSLM---ENFVRAKRPRKLPVVLTREEVARLLEHLEEG-KYRLIAKLLYGSGMRLMECLRLRIKDIDFDYGEIRVRDGKG 161 (320) T ss_pred CCCH---HHCCCCCCCCCCCEECCHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCEEEEEECCC T ss_conf 8742---2220678887377335988999998425786-13112223125515898887510110343376689973668 Q ss_pred HHHHHHCCHHHHHHHHHH------------------------------HCCCCC----CC-CCC-------CCC----CC Q ss_conf 024331121689999964------------------------------201332----21-122-------245----77 Q gi|254780134|r 230 GTIITVELPDGFMKLLAM------------------------------TPIGKE----TF-FIN-------NDK----QK 263 (348) Q Consensus 230 ~~~~~vpl~~~l~~~l~~------------------------------~~~~~~----~~-~~~-------~~g----~~ 263 (348) T Consensus 162 ~KdR~v~Lp~~L~~~L~~q~~~~~~~h~~Dl~~~G~g~V~LP~AL~rKYPnA~~~~~WqylFPs~~~S~DPrsG~~~RHH 241 (320) T TIGR02249 162 GKDRVVTLPKSLAPPLREQLERARALHEKDLLAEGYGGVYLPHALARKYPNASKEWGWQYLFPSARLSRDPRSGRIRRHH 241 (320) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEE T ss_conf 98861268175579999999999999998640588530100455421578735667876653775015577778520010 Q ss_pred CCHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 587789999999999838899--814026999999998489988999996499989999999999899999 Q gi|254780134|r 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 (348) Q Consensus 264 ~~~~~~~~~~~~~~~~agi~~--~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~~~r~a 332 (348) T Consensus 242 ~~e~~~QRav~~Av~~AGI~KpvTcHTLRHSFATHLLe~G~DIRTVQelLGHsDVkTTqIYTHVL~rG~~G 312 (320) T TIGR02249 242 IDEKTIQRAVRRAVERAGIEKPVTCHTLRHSFATHLLESGADIRTVQELLGHSDVKTTQIYTHVLNRGAAG 312 (320) T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCE T ss_conf 67004328999999957898867887421224430565177367898861788422463453051458762

HHsearch alignment for GI: 254780134 and conserved domain: TIGR02249