HHsearch alignment for GI: 254780134 and conserved domain: cd01183
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=99.93 E-value=8.6e-26 Score=186.21 Aligned_cols=152 Identities=17% Similarity=0.176 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHC--------CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE------CCCCCCCCCHHHHHHCCH
Q ss_conf 165234456666403--------780899998989861887310025664014430------233211331024331121
Q gi|254780134|r 173 PWTKEDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELP 238 (348)
Q Consensus 173 ~~t~~ei~~~~~~~~--------~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~------~i~~~~~Kt~~~~~vpl~ 238 (348)
T Consensus 1 ~lt~~~~~~~~~~~~~~p~~~~~~~~Rd~ail~ll~~tGlR~sEl~~L~~~Di~~~~~~~~~~l~i~~gKg~k~R~vpl~ 80 (196)
T cd01183 1 ALTEDQWAFVIDTVASLPAQDPEHAARLLFLLALLYSTGLRISELAAATGPDLEAFVQGGGWWLYVPVGKGGKERRVPVS 80 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCHHCCCCCEEEEEEECCCCCEEEECCC
T ss_conf 97999999999999857778970769999999999996662999983988870231167860599885889850030188
Q ss_pred HHHHHHHHHHCC-----------CCCCCCC----CCCCCCCCHHHHHHHHHHHHHHCC--------------C-CCCCCH
Q ss_conf 689999964201-----------3322112----224577587789999999999838--------------8-998140
Q gi|254780134|r 239 DGFMKLLAMTPI-----------GKETFFI----NNDKQKMNATQFSIWFKAKATKAG--------------V-NKSAHG 288 (348)
Q Consensus 239 ~~l~~~l~~~~~-----------~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~ag--------------i-~~~~H~ 288 (348)
T Consensus 81 ~~~~~~L~~yl~~r~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~spH~ 160 (196)
T cd01183 81 DELLAALARYRQARGLPPEPAAGEAVPLLGRHKSAGGGGGLSSAQLYRIVKRVFGAAADRLQADGFEEDAAQLRAASTHW 160 (196)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCC
T ss_conf 99999999999984776555546676401036777667875199999999999999999976412176751037678832
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 269999999984899889999964999899999999
Q gi|254780134|r 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 (348)
Q Consensus 289 lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~ 324 (348)
T Consensus 161 LRHt~At~ll~~G~~l~~Vq~~LGH~si~TT~~Y~H 196 (196)
T cd01183 161 LRHTHASHDLAAGVPLEHVQDNLGHASIDTTSRYLH 196 (196)
T ss_pred CHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCC
T ss_conf 589999999987999999998808998678734339